[mvapich-discuss] MVAPICH2 build problems with PGI compiler and Slurm

[Jonathan Perkins]

Our messages crossed.  I have sent a reply.

On Tue, Mar 31, 2015 at 12:37 PM Jonathan Perkins <
perkinjo at cse.ohio-state.edu> wrote:

> Hello Martin.  This problem is coming about because of an interaction with
> a libtool file present in your slurm installation.
>
> My suggestion is to temporarily (or permanently if you always used shared
> libraries) rename  the libpmi.la file in the lib or lib64 directory of
> your slurm installation to something like libpmi.la.bak.
>
> The issue comes because libtool will try to use the options present in any
> .la file it finds for libraries that its linking against.  In this case the
> slurm library was built with a compiler that used the -pthread option
> whereas PGI doesn't support this option.
>
> Let me know if this helps.
>
>
> On Tue, Mar 31, 2015 at 11:47 AM Martin Cuma <martin.cuma at utah.edu> wrote:
>
>> Hello,
>>
>> we are deploying Slurm at our center and as such I am building MVAPICH2
>> with Slurm support. All goes well with GNU and Intel compilers, but, with
>> PGI (15.1) during the make phase I get the following error:
>>
>> pgf90-Error-Unknown switch: -pthread
>>
>> This happens during the library collection phase using the libtool.
>>
>> Below is my configure setup:
>> setenv CC pgcc
>> setenv CXX pgCC
>> setenv FC pgf90
>> setenv F77 pgf90
>> setenv SLURMLIB "/uufs/chpc.utah.edu/sys/pkg/slurm/std/lib"
>> setenv SLURMINC "/uufs/chpc.utah.edu/sys/pkg/slurm/std/include"
>> setenv FFLAGS   " -fPIC -I$SLURMINC"
>> setenv FCFLAGS  " -fPIC -I$SLURMINC"
>> setenv CFLAGS   " -fPIC -I$SLURMINC"
>> setenv CXXFLAGS " -fPIC -I$SLURMINC"
>> setenv CPPFLAGS " -fPIC -I$SLURMINC"
>> setenv LDFLAGS  " -fPIC -L$SLURMLIB"
>>
>> ../../../srcdir/mvapich2/2.1rc2/configure
>> --prefix=/uufs/chpc.utah.edu/sys/installdir/mvapich2/2.1rc2p1
>> --enable-romio --with-file-system=nfs+ufs --enable-sharedlibs=gcc
>> --with-ib-include=/usr/include --with-ib-libpath=/usr/lib64
>> --enable-threads=runtime --enable-shared --with-rdma=gen2 --enable-cxx
>> --with-pmi=pmi1 --with-pm=slurm
>>
>> Note that if I remove --with-pmi=pmi1 --with-pm=slurm, the build runs
>> fine.
>>
>> Attached is the full make output of the problematic phase.
>>
>> This is on a RHEL 6.6 system.
>>
>> I appreciate if you could look at this.
>>
>> Thanks,
>> MC
>>
>> --
>> Martin Cuma
>> Center for High Performance Computing
>> Department of Geology and Geophysics
>> University of Utah_______________________________________________
>> mvapich-discuss mailing list
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>>
>
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