[Columbus] Problem to compile parallel version
Max Pinheiro Jr
maxjr82 at gmail.com
Fri Dec 4 09:15:44 EST 2015
Dear Columbus team,
I am trying to compile the parallel version of Columbus code. I have
successfully built the grad and standard package, but the compilation
proccess stoped in the initial phase for parallel step with the following
error message:
/u/maxjr/codes/columbus-7.0/Columbus/makefile:87: setting LIBS to
/u/maxjr/codes/columbus-7.0/Columbus/colib.a
/u/maxjr/codes/columbus-7.0/Columbus/blaswrapper.a -Wl,--start-group
KL_HOME/libmkl_intel_ilp64.a KL_HOME/libmkl_core.a
KL_HOME/libmkl_sequential.a -Wl,--end-group -lpthread -lm -Wl,--start-group
KL_HOME/libmkl_intel_ilp64.a KL_HOME/libmkl_core.a
KL_HOME/libmkl_sequential.a -Wl,--end-group -lpthread -lm
/u/maxjr/codes/columbus-7.0/Columbus/makefile:88: setting LIBS2 to
/u/maxjr/codes/columbus-7.0/Columbus/colib.a
/u/maxjr/codes/columbus-7.0/Columbus/libmolcas_col.a
/u/maxjr/codes/columbus-7.0/Columbus/blaswrapper.a -Wl,--start-group
KL_HOME/libmkl_intel_ilp64.a KL_HOME/libmkl_core.a
KL_HOME/libmkl_sequential.a -Wl,--end-group -lpthread -lm -Wl,--start-group
KL_HOME/libmkl_intel_ilp64.a KL_HOME/libmkl_core.a
KL_HOME/libmkl_sequential.a -Wl,--end-group -lpthread -lm
/u/maxjr/codes/columbus-7.0/Columbus/makefile:101: cpp WITH_REDIRECTON ::
make: *** No rule to make target `ciudg_data.o', needed by `pciudg.x'.
Stop.
+ for i in '$*'
+ test -f /u/maxjr/codes/columbus-7.0/Columbus/pciudg.x.2
+ test -f /u/maxjr/codes/columbus-7.0/Columbus/pciudg.x.3
+ test -f /u/maxjr/codes/columbus-7.0/Columbus/pciudg.x.4
+ test -f /u/maxjr/codes/columbus-7.0/Columbus/pciudg.x
+ mv pciudg.x /u/maxjr/codes/columbus-7.0/Columbus/pciudg.x
mv: cannot stat `pciudg.x': No such file or directory
I am compiling the code with the standard libraries of intel fortran and I
am using the following instructions in the install.config file:
GREP /bin/grep
GMAKE make
TAR /bin/tar
RANLIB /usr/bin/ranlib
CPPL cpp -C -E -traditional
PERL /usr/bin/perl
BLASLIBRARY -Wl,--start-group $MKL_HOME/libmkl_intel_ilp64.a
$MKL_HOME/libmkl_core.a $MKL_HOME/libmkl_sequential.a -Wl,--end-group
-lpthread -lm
LAPACKLIBRARY -Wl,--start-group $MKL_HOME/libmkl_intel_ilp64.a
$MKL_HOME/libmkl_core.a $MKL_HOME/libmkl_sequential.a -Wl,--end-group
-lpthread -lm
MACHINEID linux64.ifc.byterecl
GUNZIP /bin/gunzip
GACOMMUNICATION MPI
MPI_MAINDIR /afs/@cell/common/soft/intel/ics2016/impi/5.1.1/intel64/lib
MPI_CC mpiicc
MPI_LD mpiifort -Wl,-z,muldefs
MPI_FC mpiifort -Wl,-z,muldefs
PSCRIPT
GAVERSION GA50
MPI_LIBS
/afs/@cell/common/soft/intel/ics2016/impi/5.1.1/intel64/lib/libmpi_ilp64.so.4.1
-libverbs -libumad
MPI_STARTUP /afs/@cell/common/soft/intel/ics2016/impi/5.1.1/bin64/mpirun -v
-np _NPROC_ _EXE_ _EXEOPTS_
COLUMBUS /u/maxjr/codes/columbus-7.0/Columbus
DALTON /u/maxjr/codes/columbus-7.0/Columbus/source/dalton
COLUMBUSVERSION 7.0
INSTALLOPTION NOGA_INSTALL
Please, could anyone help me to find out what is going wrong? I will
greatly appreciate any help you can give me to solve this problem.
All the best
Dr. Max Pinheiro Jr
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