[OOD-users] OnDemand Galaxy

[Shawn Doughty]

Thanks for the suggestions, I'll definitely let everyone know once I get
this working.

On Fri, Sep 28, 2018, 12:02 PM Franz, Eric <efranz at osc.edu> wrote:

> Shawn,
>
>
>
> We haven’t tried yet, but looks like you are making good progress!
>
>
>
> Have you configured Galaxy to run at the suburi /node/m3n08/8080?
>
>
>
> Note that if you are using /node/ proxy, that means that Galaxy needs to
> be configured at a suburi that matches that url.
>
>
>
> According to
> https://docs.galaxyproject.org/en/latest/admin/special_topics/nginx.html#basic-configuration
> the default Galaxy configuration . These directions for “Serving Galaxy at
> a sub directory” might help:
> https://docs.galaxyproject.org/en/latest/admin/special_topics/nginx.html#serving-galaxy-at-a-sub-directory-such-as-galaxy.
>
>
>
>
> > The Galaxy application needs to be aware that it is running with a
> prefix (for generating URLs in dynamic pages). This is accomplished by
> configuring a Paste proxy-prefix filter in the [app:main] section of
> config/galaxy.ini and restarting Galaxy
>
> >
>
> >[filter:proxy-prefix]
>
> >use = egg:PasteDeploy#prefix
>
> >prefix = /galaxy
>
> >
>
> >[app:main]
>
> >filter-with = proxy-prefix
>
> >cookie_path = /galaxy
>
>
>
> Note in your case prefix would need to be /node/m3n08/8080.
>
>
>
> Also, OnDemand supports another proxy called /rnode/ which is for servers
> that use 100% relative URLs, such as noVNC. In that case, there is no need
> to tell the server what the sub uri/base uri/prefix is since it won’t be
> using that to build internal hyperlinks.
>
>
>
> Also, if you get this working could you share how you did it?
>
>
>
> Thanks,
>
> Eric
>
>
>
> ---
>
> Eric Franz, Senior Web & Interface App Engineer
>
> Ohio Supercomputer Center
>
> An Ohio Technology Consortium (OH-TECH) Member
>
> 1224 Kinnear Road
>
> Columbus, OH 43212
>
> email: efranz at osc.edu
>
>
>
> *From: *OOD-users <ood-users-bounces at lists.osc.edu> on behalf of Shawn
> Doughty <shawn.doughty at tufts.edu>
> *Reply-To: *User support mailing list for Open OnDemand <
> ood-users at lists.osc.edu>
> *Date: *Wednesday, September 26, 2018 at 1:59 PM
> *To: *User support mailing list for Open OnDemand <ood-users at lists.osc.edu
> >
> *Subject: *[OOD-users] OnDemand Galaxy
>
>
>
> Has anyone made individual instances of galaxy work in OnDemand? We are
> doing that in order to provide dev/test instances for team members without
> having to setup an entire virtual.
>
>
>
> I cloned the jupyter, removed all the extra "stuff", hardcoded the port to
> 8080 and it is almost working. Galaxy starts up, I get a link but clicking
> returns a "The resource could not be found. No route for /node/m3n08/8080"
>
>
>
> view.html.erb is using <form action="/node/<%= host %>/<%= port %>"
> method="post" target="_blank">
>
>
>
> I can get to the port manually from another node via lynx, etc.
>
>
> --
>
> Shawn G. Doughty
> Manager - Research Computing
> Tufts Technology Services (TTS)
>
> Research Technology (RT)
>
> 16 Dearborn Road
> Somerville, MA 02144
> 617-627-5462
> http://it.tufts.edu/
> <https://exchange.tufts.edu/owa/redir.aspx?C=I4ijzFrF9U-qoUscfQAAw3PH17xA188ItQ-l2VPx05symHhOFT2FNSr8FiNXjMnyEtzrTlLLj-Q.&URL=http%3a%2f%2fit.tufts.edu%2f>
>
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