[OOD-users] R Server

[Shawn Doughty]

Has anyone managed to get a safe copy of the binary or tarball for proot?
Every time I've ever gone to the site the download section is in the wrong
language and it just doesn't look like something one should be accessing.

Ideas?

On Tue, Feb 27, 2018 at 12:44 PM, Doughty, Shawn <Shawn.Doughty at tufts.edu>
wrote:

> Jerey, Excellent, thanks for the information. Tufts will be happy to test
> out the rpms. In the meantime I try the solutions you suggested.
> Kevin, I've found the upgrade process to 1.2 and 1.3 to be 99% glitch
> free. The only major issue was on my end after messing up file permissions
> on the OOD source tree and then rsyncing those to the destination This made
> a couple of the apps break until I noticed the permission error in nginx
> log files.
>
>
> On Tue, Feb 27, 2018 at 8:50 AM, Nicklas, Jeremy <jnicklas at osc.edu> wrote:
>
>> Hi Shawn,
>>
>> > So far I get "no implicit conversion of Hash into Array" when
>> submitting the job.
>>
>> If you copied the source from OSC's "bc_osc_rstudio_server" Interactive
>> App:
>>
>> https://github.com/OSC/bc_osc_rstudio_server/
>>
>> then it sounds like your "submit.yml.erb" might have PBS/Torque specific
>> references in it (this is what OSC uses). You should probably copy your
>> "submit.yml.erb" that you used in your Jupyter app.
>>
>> > Has anyone managed to get R Server working?
>>
>> A couple centers have got RStudio Server working, although caution should
>> be taken if you use OSC's "bc_osc_rstudio_server" Interactive App as it
>> takes advantage of some features in the latest Dashboard app that aren't
>> present in the OnDemand 1.2 release.
>>
>> That leaves you with three options:
>>
>> 1. Manually update the Dashboard code from the GitHub repo, or wait until
>> OnDemand 1.3 release in March
>> 2. Volunteer to install the beta RPM we are currently developing
>> 3. Modify the "bc_osc_rstudio_server" app so it works with the current
>> Dashboard
>>   - I believe this means replacing "$(find_port ${host})" with just
>> "$(find_port)" in the template files
>>   - Also, removing the "template/after.sh.erb" since it calls
>> "wait_until_port_used" which doesn't exist yet
>>
>> Also, you will need to install the dependencies on the compute nodes (see
>> README.md). I believe both HPC centers went the route of using a
>> Singularity image.
>>
>> --
>> Jeremy Nicklas
>> Web and Interface App Engineer
>> Ohio Supercomputer Center (OSC) <https://osc.edu/>
>> A member of the Ohio Technology Consortium <https://oh-tech.org/>
>> 1224 Kinnear Road, Columbus, Ohio 43212
>> Office: (614) 292-6739 <+16142926739> • Mobile: (614) 316-6428
>> <+16143166428> • Fax: (614) 292-7168 <+16142927168>
>> jnicklas at osc.edu
>>
>> Learn more about OSC at https://osc.edu
>> ------------------------------
>> *From:* OOD-users [ood-users-bounces at lists.osc.edu] on behalf of Shawn
>> Doughty [shawn.doughty at tufts.edu]
>> *Sent:* Monday, February 26, 2018 8:56 PM
>> *To:* User support mailing list for Open OnDemand
>> *Subject:* [OOD-users] R Server
>>
>> Hi,
>>
>> Has anyone managed to get R Server working? I know it is not officially
>> supported until the next release...  We have jupyter and jupyterlab working
>> with pilot users (way cool!) and they are now clamoring to test R Server...
>> and Matlab.
>>
>> So far I get "no implicit conversion of Hash into Array" when submitting
>> the job.
>>
>>
>> --
>> Shawn G. Doughty
>> Senior Research Technology Specialist, Research Technology
>> Tufts Technology Services (TTS)
>> 16 Dearborn Road
>> Somerville, MA 02144
>> 617-627-5462 <(617)%20627-5462>
>> http://it.tufts.edu/
>> <https://exchange.tufts.edu/owa/redir.aspx?C=I4ijzFrF9U-qoUscfQAAw3PH17xA188ItQ-l2VPx05symHhOFT2FNSr8FiNXjMnyEtzrTlLLj-Q.&URL=http%3a%2f%2fit.tufts.edu%2f>
>>
>
>
>
> --
> Shawn G. Doughty
> Senior Research Technology Specialist, Research Technology
> Tufts Technology Services (TTS)
> 16 Dearborn Road
> Somerville, MA 02144
> 617-627-5462 <(617)%20627-5462>
> http://it.tufts.edu/
> <https://exchange.tufts.edu/owa/redir.aspx?C=I4ijzFrF9U-qoUscfQAAw3PH17xA188ItQ-l2VPx05symHhOFT2FNSr8FiNXjMnyEtzrTlLLj-Q.&URL=http%3a%2f%2fit.tufts.edu%2f>
>



-- 
Shawn G. Doughty
Senior Research Technology Specialist, Research Technology
Tufts Technology Services (TTS)
16 Dearborn Road
Somerville, MA 02144
617-627-5462
http://it.tufts.edu/
<https://exchange.tufts.edu/owa/redir.aspx?C=I4ijzFrF9U-qoUscfQAAw3PH17xA188ItQ-l2VPx05symHhOFT2FNSr8FiNXjMnyEtzrTlLLj-Q.&URL=http%3a%2f%2fit.tufts.edu%2f>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.osu.edu/pipermail/ood-users/attachments/20180301/b12ee6cf/attachment.html>