<div dir="ltr"><div>Has anyone managed to get a safe copy of the binary or tarball for proot? Every time I've ever gone to the site the download section is in the wrong language and it just doesn't look like something one should be accessing.<br><br></div>Ideas?<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Feb 27, 2018 at 12:44 PM, Doughty, Shawn <span dir="ltr"><<a href="mailto:Shawn.Doughty@tufts.edu" target="_blank">Shawn.Doughty@tufts.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div>Jerey, Excellent, thanks for the information. Tufts will be happy to test out the rpms. In the meantime I try the solutions you suggested.<br>
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Kevin, I've found the upgrade process to 1.2 and 1.3 to be 99% glitch free. The only major issue was on my end after messing up file permissions on the OOD source tree and then rsyncing those to the destination This made a couple of the apps break until I noticed
the permission error in nginx log files.<br>
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<div class="gmail_quote"><span class="">On Tue, Feb 27, 2018 at 8:50 AM, Nicklas, Jeremy <span dir="ltr">
<<a href="mailto:jnicklas@osc.edu" target="_blank">jnicklas@osc.edu</a>></span> wrote:<br>
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<div style="direction:ltr;font-family:Verdana;color:#000000;font-size:10pt">Hi Shawn,
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<div>> So far I get "no implicit conversion of Hash into Array" when submitting the job.</div>
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<div>If you copied the source from OSC's "bc_osc_rstudio_server" Interactive App:</div>
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<div><span style="font-size:13.3333px"><a href="https://github.com/OSC/bc_osc_rstudio_server/" target="_blank">https://github.com/OSC/bc_osc_<wbr>rstudio_server/</a></span></div>
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<div>then it sounds like your "submit.yml.erb" might have PBS/Torque specific references in it (this is what OSC uses). You should probably copy your "submit.yml.erb" that you used in your Jupyter app.</div>
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<div>> Has anyone managed to get R Server working?</div>
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<div>A couple centers have got RStudio Server working, although caution should be taken if you use OSC's "bc_osc_rstudio_server" Interactive App as it takes advantage of some features in the latest Dashboard app that aren't present in the OnDemand 1.2 release.</div>
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<div>That leaves you with three options:</div>
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<div>1. Manually update the Dashboard code from the GitHub repo, or wait until OnDemand 1.3 release in March</div>
<div>2. Volunteer to install the beta RPM we are currently developing</div>
<div>3. Modify the "bc_osc_rstudio_server" app so it works with the current Dashboard</div>
<div> - I believe this means replacing "$(find_port ${host})" with just "$(find_port)" in the template files</div>
<div> - Also, removing the "template/after.sh.erb" since it calls "wait_until_port_used" which doesn't exist yet</div>
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<div>Also, you will need to install the dependencies on the compute nodes (see README.md). I believe both HPC centers went the route of using a Singularity image.</div>
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<div><span style="color:rgb(85,85,85);font-size:12px;font-weight:bold;line-height:18px;background-color:rgb(255,255,255)"><font face="Verdana">Jeremy Nicklas</font></span></div>
<font face="Verdana"><span style="color:rgb(85,85,85);font-size:12px;line-height:18px;background:rgb(255,255,255)">Web and Interface App Engineer</span><br style="color:rgb(85,85,85);font-size:12px;line-height:18px">
<a href="https://osc.edu/" style="color:rgb(207,16,45);text-decoration:none;font-size:12px;line-height:18px;background:rgb(255,255,255)" target="_blank">Ohio Supercomputer Center (OSC)</a><br style="color:rgb(85,85,85);font-size:12px;line-height:18px">
<span style="color:rgb(85,85,85);font-size:12px;line-height:18px;background-color:rgb(255,255,255)">A member of the </span><a href="https://oh-tech.org/" style="color:rgb(207,16,45);text-decoration:none;font-size:12px;line-height:18px" target="_blank">Ohio
Technology Consortium</a><br style="color:rgb(85,85,85);font-size:12px;line-height:18px">
<span style="color:rgb(85,85,85);font-size:12px;line-height:18px;background-color:rgb(255,255,255)">1224 Kinnear Road, Columbus, Ohio 43212</span><br style="color:rgb(85,85,85);font-size:12px;line-height:18px">
<span style="color:rgb(85,85,85);font-size:12px;line-height:18px;background-color:rgb(255,255,255)">Office: </span><a href="tel:+16142926739" style="color:rgb(207,16,45);text-decoration:none;font-size:12px;line-height:18px" target="_blank">(614) 292-6739</a><span style="color:rgb(85,85,85);font-size:12px;line-height:18px;background-color:rgb(255,255,255)"> •
Mobile: </span><a href="tel:+16143166428" style="color:rgb(207,16,45);text-decoration:none;font-size:12px;line-height:18px" target="_blank">(614) 316-6428</a><span style="color:rgb(85,85,85);font-size:12px;line-height:18px;background-color:rgb(255,255,255)"> •
Fax: </span><a href="tel:+16142927168" style="color:rgb(207,16,45);text-decoration:none;font-size:12px;line-height:18px" target="_blank">(614) 292-7168</a><br style="color:rgb(85,85,85);font-size:12px;line-height:18px">
<a href="mailto:jnicklas@osc.edu" style="color:rgb(207,16,45);text-decoration:none;font-size:12px;line-height:18px" target="_blank">jnicklas@osc.edu</a><br style="color:rgb(85,85,85);font-size:12px;line-height:18px">
<br style="color:rgb(85,85,85);font-size:12px;line-height:18px">
<span style="color:rgb(85,85,85);font-size:12px;line-height:18px;background-color:rgb(255,255,255)">Learn more about OSC at </span><a href="https://osc.edu/" style="color:rgb(207,16,45);text-decoration:none;font-size:12px;line-height:18px" target="_blank">https://osc.edu</a></font></div>
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<div id="m_-3669651211110162495m_-5093512219837695681divRpF139047" style="direction:ltr"><font size="2" color="#000000" face="Tahoma"><b>From:</b> OOD-users [<a href="mailto:ood-users-bounces@lists.osc.edu" target="_blank">ood-users-bounces@lists.osc.e<wbr>du</a>] on behalf of Shawn
Doughty [<a href="mailto:shawn.doughty@tufts.edu" target="_blank">shawn.doughty@tufts.edu</a>]<br>
<b>Sent:</b> Monday, February 26, 2018 8:56 PM<br>
<b>To:</b> User support mailing list for Open OnDemand<br>
<b>Subject:</b> [OOD-users] R Server<br>
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<div>Hi,<br>
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Has anyone managed to get R Server working? I know it is not officially supported until the next release... We have jupyter and jupyterlab working with pilot users (way cool!) and they are now clamoring to test R Server... and Matlab.<br>
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So far I get "no implicit conversion of Hash into Array" when submitting the job.<br>
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<div>-- <br>
<div class="m_-3669651211110162495m_-5093512219837695681gmail_signature">
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<div dir="ltr"><span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Shawn G. Doughty</span><br style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">
<span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Senior Research Technology Specialist</span>, Research Technology<br>
<span dir="ltr"><font face="Helvetica"><span style="font-weight:normal;font-variant:normal;text-transform:none"><span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Tufts Technology Services (TTS)</span></span></font></span><br>
16 Dearborn Road<br>
Somerville, MA 02144<br style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">
<span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px"><a href="tel:(617)%20627-5462" value="+16176275462" target="_blank">617-627-5462</a><br>
</span><a href="https://exchange.tufts.edu/owa/redir.aspx?C=I4ijzFrF9U-qoUscfQAAw3PH17xA188ItQ-l2VPx05symHhOFT2FNSr8FiNXjMnyEtzrTlLLj-Q.&URL=http%3a%2f%2fit.tufts.edu%2f" style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px" target="_blank">http://it.tufts.edu/</a></div>
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-- <br>
<div class="m_-3669651211110162495gmail_signature" data-smartmail="gmail_signature">
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<div dir="ltr"><span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Shawn G. Doughty</span><br style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">
<span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Senior Research Technology Specialist</span>, Research Technology<br>
<span dir="ltr"><font face="Helvetica"><span style="font-weight:normal;font-variant:normal;text-transform:none"><span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Tufts Technology Services (TTS)</span></span></font></span><br>
16 Dearborn Road<br>
Somerville, MA 02144<br style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">
<span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px"><a href="tel:(617)%20627-5462" value="+16176275462" target="_blank">617-627-5462</a><br>
</span><a href="https://exchange.tufts.edu/owa/redir.aspx?C=I4ijzFrF9U-qoUscfQAAw3PH17xA188ItQ-l2VPx05symHhOFT2FNSr8FiNXjMnyEtzrTlLLj-Q.&URL=http%3a%2f%2fit.tufts.edu%2f" style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px" target="_blank">http://it.tufts.edu/</a></div>
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</blockquote></div><br><br clear="all"><br>-- <br><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr">
<span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Shawn G. Doughty</span><br style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">
<span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Senior Research Technology Specialist</span>, Research Technology<br>
<span dir="ltr"><font face="Helvetica"><span style="font-weight:normal;font-variant:normal;text-transform:none"><span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">Tufts Technology Services (TTS)</span></span></font></span><br>
16 Dearborn Road<br>
Somerville, MA 02144<br style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">
<span style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px">617-627-5462<br>
</span><a href="https://exchange.tufts.edu/owa/redir.aspx?C=I4ijzFrF9U-qoUscfQAAw3PH17xA188ItQ-l2VPx05symHhOFT2FNSr8FiNXjMnyEtzrTlLLj-Q.&URL=http%3a%2f%2fit.tufts.edu%2f" style="font-family:'Segoe UI',Helvetica,Arial,sans-serif;font-size:13.600000381469727px" target="_blank">http://it.tufts.edu/</a></div></div></div></div>
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