[Mvapich-discuss] ibmpifort.so: undefined reference to `CFI_is_contiguous'

Fri Sep 22 16:15:21 EDT 2023

With this version, I get to
src/pm/mpirun/src/hostfile/parser.y: In function ‘commit’:
src/pm/mpirun/src/hostfile/parser.y:130:15: warning: incompatible implicit
declaration of built-in function ‘realloc’ [enabled by default]
         ptr = realloc(rank, sizeof(struct rank_s) * n_alloc);
               ^
src/pm/mpirun/src/hostfile/parser.y: In function ‘read_hostfile’:
src/pm/mpirun/src/hostfile/parser.y:197:13: warning: incompatible implicit
declaration of built-in function ‘exit’ [enabled by default]
             exit(EXIT_FAILURE);
             ^
src/pm/mpirun/src/hostfile/parser.y:197:18: error: ‘EXIT_FAILURE’
undeclared (first use in this function)
             exit(EXIT_FAILURE);
                  ^
src/pm/mpirun/src/hostfile/parser.y:197:18: note: each undeclared
identifier is reported only once for each function it appears in
src/pm/mpirun/src/hostfile/parser.y:212:2: warning: incompatible implicit
declaration of built-in function ‘exit’ [enabled by default]
  exit(EXIT_FAILURE);
  ^
src/pm/mpirun/src/hostfile/parser.y:222:9: warning: incompatible implicit
declaration of built-in function ‘exit’ [enabled by default]
         exit(EXIT_FAILURE);
         ^
src/pm/mpirun/src/hostfile/parser.y:230:9: warning: incompatible implicit
declaration of built-in function ‘exit’ [enabled by default]
         exit(EXIT_FAILURE);
         ^
make[2]: ***
[src/pm/mpirun/src/hostfile/src_pm_mpirun_src_hostfile_libhostfile_a-parser.o]
Error 1
make[2]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'
make: *** [all] Error 2

I'll poke around to see where EXIT_FAILURE is defined, etc... but the patch
isn't clean. BTW, I used
./configure  --disable-f08  -prefix=/...

    Cheers,
      Sylvain
--

On Fri, Sep 22, 2023 at 11:34 AM Lieber, Matt <lieber.31 at osu.edu> wrote:

> Hi Sylvain,
> Sorry to hear you still have issues.  I think this is because autogen was
> not run which is required when changes to the configure.ac are made.
> Here is a tar that I have made please try these and let me know if there
> are still any issues.
>
> mvapich2-2.3.7-1.tar.gz
> <https://urldefense.com/v3/__https://buckeyemailosu-my.sharepoint.com/:u:/g/personal/lieber_31_osu_edu/Edlz4H8TpXlAvUU9GUbgG70BTf20B55777B5EdBaht2iSA?e=wCqN3V__;!!KGKeukY!zul7ixD3gTqKwwiZfw1-GFfxqy8BIOfCbsjbHo7mI6F4sUaYqxis1k-h763Pblc-W3kgoH_GZh9tUkTF5PoH1dZpjTnV6sNCRWXY3w$ >
>
>
> Thanks,
> Matt
> ------------------------------
> *From:* Korzennik, Sylvain <skorzennik at cfa.harvard.edu>
> *Sent:* Thursday, September 21, 2023 5:33 PM
> *To:* Lieber, Matt <lieber.31 at osu.edu>
> *Cc:* Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path,
> iWARP and EFA) Libraries developed at NBCL/OSU <
> mvapich-discuss at lists.osu.edu>
> *Subject:* Re: [Mvapich-discuss] ibmpifort.so: undefined reference to
> `CFI_is_contiguous'
>
> Thx Matt, but 1- I had to execute /bin/sh /local/hpc/nvidia/23.
> 7/mvapich2-2. 3. 7-1/confdb/missing aclocal -I confdb /bin/sh
> /local/hpc/nvidia/23. 7/mvapich2-2. 3. 7-1/confdb/missing automake
> --foreign b/c the make was trying to execute /bin/sh
> Thx Matt, but
>
> 1- I had to execute
>  /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing aclocal -I
>  confdb
>  /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing automake
>  --foreign
> b/c the make was trying to execute
>  /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing
> aclocal-1.15 -I  confdb
>  /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing
> automake-1.15  --foreign
> b/c the configure.ac
> <https://urldefense.com/v3/__http://configure.ac__;!!KGKeukY!2msSyVSCwsxQmNkdBFxbFYZi7st28k_-41G55m9ua21Gx6frh-dQaJ8e80ElBTMtWC8IYCWbjqPCnl3y9x0HDygfO0Se$>
> was modified by the patching, and looking for aclocal-1.15 automake-1.15
> fail.
>
>  After that the make reran the config (--recheck) and then croaks on
>
> make  all-recursive
> make[1]: Entering directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'
> make[1]: execvp: /bin/sh: Argument list too long
> make[1]: *** [all-recursive] Error 127
> make[1]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'
> make: *** [all] Error 2
>
> What am I missing???
>
>     Cheers,
>       Sylvain
> --
>
>
>
>
> On Thu, Sep 21, 2023 at 1:32 PM Lieber, Matt <lieber.31 at osu.edu> wrote:
>
> Hi Sylvain,
> Thank you for the report, we think we have a patch that can fix this
> issue.  Please use the attached patch with --disable-f08 and let us
> know if you have any other questions.
>
>
> -Matt
> ------------------------------
> *From:* Mvapich-discuss <mvapich-discuss-bounces at lists.osu.edu> on behalf
> of Korzennik, Sylvain via Mvapich-discuss <mvapich-discuss at lists.osu.edu>
> *Sent:* Tuesday, September 19, 2023 6:54 PM
> *To:* Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path,
> iWARP and EFA) Libraries developed at NBCL/OSU <
> mvapich-discuss at lists.osu.edu>
> *Subject:* [Mvapich-discuss] ibmpifort.so: undefined reference to
> `CFI_is_contiguous'
>
> I was able to build mvapich2-2. 3. 7-1 w/ nvidia's compiler ver 23. 5 or
> 23. 7 under CO7 (w/ same tweaks as when using ver 23. 3), but I can't
> compile a trivial MPI test program w/ either version: % mpif90 -o ring0f
> ring0f. o /share/apps/nvidia/Linux_x86_64/23. 5/mvapich2-2. 3.
> 7-1/lib/libmpifort. so:
> I was able to build mvapich2-2.3.7-1 w/ nvidia's compiler ver 23.5 or 23.7
> under CO7 (w/ same tweaks as when using ver 23.3), but I can't compile a
> trivial MPI test program w/ either version:
>
> % mpif90 -o ring0f ring0f.o
> /share/apps/nvidia/Linux_x86_64/23.5/mvapich2-2.3.7-1/lib/libmpifort.so:
> undefined reference to `CFI_is_contiguous'
>
> or
>
> % mpif90 -o ring0f ring0f.o
> /share/apps/nvidia/Linux_x86_64/23.7/mvapich2-2.3.7-1/lib/libmpifort.so:
> undefined reference to `CFI_is_contiguous'
>
> Anyone ran into this and has a solution? Rebuilding w/ --disable-f08 in
> the config step does not help (based on
> https://urldefense.com/v3/__https://github.com/pmodels/mpich/issues/6505__;!!KGKeukY!zul7ixD3gTqKwwiZfw1-GFfxqy8BIOfCbsjbHo7mI6F4sUaYqxis1k-h763Pblc-W3kgoH_GZh9tUkTF5PoH1dZpjTnV6sN00xjDAQ$ 
> <https://urldefense.com/v3/__https://github.com/pmodels/mpich/issues/6505__;!!KGKeukY!2u0ZW6taxuRSfFe8Dk9FewQ4ND7Y-Ju0qBVz8Px7kDWV693LGxXFKlcoAd77SHwXNULF6xYZ9Lli75GOIA1Lc3yIM33ujPVzm2KqxA$>
> for MPICH)
>
>     Cheers,
>       Sylvain
> --
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.osu.edu/pipermail/mvapich-discuss/attachments/20230922/1c37c07a/attachment-0002.html>