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With this version, I get to src/pm/mpirun/src/hostfile/parser. y: In function ‘commit’: src/pm/mpirun/src/hostfile/parser. y: 130: 15: warning: incompatible implicit declaration of built-in function ‘realloc’ [enabled by default] ptr = realloc(rank,
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<div dir="ltr"><div class="gmail_default" style="font-size:small;color:#351c75">With this version, I get to</div><div class="gmail_default" style="font-size:small"><font face="monospace"><font color="#0000ff">src/pm/mpirun/src/hostfile/parser.y: In function ‘commit’:</font><br><font color="#0000ff">src/pm/mpirun/src/hostfile/parser.y:130:15: warning: incompatible implicit declaration of built-in function ‘realloc’ [enabled by default]</font><br><font color="#0000ff"> ptr = realloc(rank, sizeof(struct rank_s) * n_alloc);</font><br><font color="#0000ff"> ^</font><br><font color="#0000ff">src/pm/mpirun/src/hostfile/parser.y: In function ‘read_hostfile’:</font><br><font color="#0000ff">src/pm/mpirun/src/hostfile/parser.y:197:13: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]</font><br><font color="#0000ff"> exit(EXIT_FAILURE);</font><br><font color="#0000ff"> ^</font><br><font color="#ff0000">src/pm/mpirun/src/hostfile/parser.y:197:18: error: ‘EXIT_FAILURE’ undeclared (first use in this function)<br> exit(EXIT_FAILURE);<br> ^<br>src/pm/mpirun/src/hostfile/parser.y:197:18: note: each undeclared identifier is reported only once for each function it appears in<br>src/pm/mpirun/src/hostfile/parser.y:212:2: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]<br> exit(EXIT_FAILURE);</font><br><font color="#0000ff"> ^</font><br><font color="#0000ff">src/pm/mpirun/src/hostfile/parser.y:222:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]</font><br><font color="#0000ff"> exit(EXIT_FAILURE);</font><br><font color="#0000ff"> ^</font><br><font color="#0000ff">src/pm/mpirun/src/hostfile/parser.y:230:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]</font><br><font color="#0000ff"> exit(EXIT_FAILURE);</font><br><font color="#0000ff"> ^</font><br><font color="#0000ff">make[2]: *** [src/pm/mpirun/src/hostfile/src_pm_mpirun_src_hostfile_libhostfile_a-parser.o] Error 1</font><br><font color="#0000ff">make[2]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'</font><br><font color="#0000ff">make[1]: *** [all-recursive] Error 1</font><br><font color="#0000ff">make[1]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'</font><br><font color="#0000ff">make: *** [all] Error 2</font></font><br></div><div class="gmail_default" style="font-size:small;color:#351c75"><br></div><div class="gmail_default" style="font-size:small"><font color="#351c75">I'll poke around to see where </font><span style="color:rgb(255,0,0);font-family:monospace">E</span><span style="color:rgb(255,0,0);font-family:monospace">XIT_FAILUR</span><span style="color:rgb(255,0,0);font-family:monospace">E </span><font color="#351c75"><span style="font-family:monospace">is </span>defined, etc... but the patch isn't clean. BTW, I used</font></div><div class="gmail_default" style="font-size:small"><font face="monospace" color="#0000ff">./configure --disable-f08 -prefix=/...<br></font></div><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><font size="2"><span style="color:rgb(53,28,117)"><br></span></font></div><div dir="ltr"><font size="2"><span style="color:rgb(53,28,117)"> </span></font><span style="color:rgb(53,28,117)"> Cheers,</span><font size="2"><span style="color:rgb(53,28,117)"><br> Sylvain<br>--<br></span><font size="2"><br></font></font></div></div></div></div></div></div></div></div></div></div></div><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Sep 22, 2023 at 11:34 AM Lieber, Matt <<a href="mailto:lieber.31@osu.edu">lieber.31@osu.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="msg-8196015484634552687">
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<span style="font-size:12pt;margin:0px;color:black;background-color:rgb(255,255,255)"><span style="margin:0px;background-color:white">Hi Sylvain,</span></span>
<div style="font-size:12pt;margin:0px;color:black;background-color:rgb(255,255,255)">
<span style="margin:0px;background-color:white">Sorry to hear you still have issues. I think this is because autogen was not run which is required when changes to the <a href="https://urldefense.com/v3/__http://configure.ac__;!!KGKeukY!zul7ixD3gTqKwwiZfw1-GFfxqy8BIOfCbsjbHo7mI6F4sUaYqxis1k-h763Pblc-W3kgoH_GZh9tUkTF5PoH1dZpjTnV6sPO5iubTg$" target="_blank">configure.ac</a> are made. Here is a tar that I have made please
try these and let me know if there are still any issues.<br>
<br>
</span></div>
<div style="font-size:12pt;margin:0px;color:black;background-color:rgb(255,255,255)">
<span style="margin:0px;background-color:white"><span><a href="https://urldefense.com/v3/__https://buckeyemailosu-my.sharepoint.com/:u:/g/personal/lieber_31_osu_edu/Edlz4H8TpXlAvUU9GUbgG70BTf20B55777B5EdBaht2iSA?e=wCqN3V__;!!KGKeukY!zul7ixD3gTqKwwiZfw1-GFfxqy8BIOfCbsjbHo7mI6F4sUaYqxis1k-h763Pblc-W3kgoH_GZh9tUkTF5PoH1dZpjTnV6sNCRWXY3w$" rel="noopener noreferrer" id="m_-8196015484634552687OLK_Beautified_OWA92b3e5f2-217f-14a4-f821-8e68e9465234" style="padding:0px 1px;border-radius:2px;background-color:rgb(243,242,241)" target="_blank"><img alt="" role="presentation" style="width: 16px; height: 16px; vertical-align: middle; padding: 1px 2px 2px 0px;" src="https://res-h3.public.cdn.office.net/assets/mail/file-icon/png/generic_16x16.png">mvapich2-2.3.7-1.tar.gz</a></span> <br>
</span></div>
<div style="font-size:12pt;margin:0px;color:black;background-color:rgb(255,255,255)">
<span style="margin:0px;background-color:white"><br>
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<span style="margin:0px;background-color:white">Thanks,</span></div>
<span style="font-size:12pt;margin:0px;color:black;background-color:rgb(255,255,255)"><span style="margin:0px;background-color:white">Matt</span></span><br>
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<div id="m_-8196015484634552687divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Korzennik, Sylvain <<a href="mailto:skorzennik@cfa.harvard.edu" target="_blank">skorzennik@cfa.harvard.edu</a>><br>
<b>Sent:</b> Thursday, September 21, 2023 5:33 PM<br>
<b>To:</b> Lieber, Matt <<a href="mailto:lieber.31@osu.edu" target="_blank">lieber.31@osu.edu</a>><br>
<b>Cc:</b> Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA) Libraries developed at NBCL/OSU <<a href="mailto:mvapich-discuss@lists.osu.edu" target="_blank">mvapich-discuss@lists.osu.edu</a>><br>
<b>Subject:</b> Re: [Mvapich-discuss] ibmpifort.so: undefined reference to `CFI_is_contiguous'</font>
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Thx Matt, but 1- I had to execute /bin/sh /local/hpc/nvidia/23. 7/mvapich2-2. 3. 7-1/confdb/missing aclocal -I confdb /bin/sh /local/hpc/nvidia/23. 7/mvapich2-2. 3. 7-1/confdb/missing automake --foreign b/c the make was trying to execute /bin/sh
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<div style="font-size:small;color:rgb(53,28,117)">Thx Matt, but</div>
<div style="font-size:small;color:rgb(53,28,117)"><br>
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<div style="font-size:small;color:rgb(53,28,117)">1- I had to execute </div>
<div style="font-size:small"><font face="monospace" color="#0000ff"> /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing aclocal -I confdb<br>
/bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing automake --foreign</font><br>
</div>
<div style="font-size:small;color:rgb(53,28,117)"><font face="arial, sans-serif">b/c the make was trying to execute</font></div>
<div style="font-size:small"><font face="monospace" color="#0000ff"> /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing aclocal-1.15 -I confdb</font></div>
<div style="font-size:small"><font face="monospace"><font color="#0000ff"> /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing automake-1.15 --foreign</font><br>
</font></div>
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<div><font size="2"><span style="color:rgb(53,28,117)"><span style="font-size:small;color:rgb(53,28,117)">b/c the
<a href="https://urldefense.com/v3/__http://configure.ac__;!!KGKeukY!2msSyVSCwsxQmNkdBFxbFYZi7st28k_-41G55m9ua21Gx6frh-dQaJ8e80ElBTMtWC8IYCWbjqPCnl3y9x0HDygfO0Se$" target="_blank">
configure.ac</a> was modified by the patching, and looking for aclocal-1.15 automake-1.15 fail.</span></span></font></div>
<div><font size="2"><span style="color:rgb(53,28,117)"><span style="font-size:small;color:rgb(53,28,117)"><br>
</span></span></font></div>
<div><span style="color:rgb(53,28,117)"><span style="font-size:small;color:rgb(53,28,117)"> After that the make reran the config (--recheck) and then croaks on</span></span></div>
<div><span style="color:rgb(53,28,117)"><span style="font-size:small;color:rgb(53,28,117)"><br>
</span></span></div>
<div><font face="monospace" color="#ff0000">make all-recursive<br>
make[1]: Entering directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'<br>
make[1]: execvp: /bin/sh: Argument list too long<br>
make[1]: *** [all-recursive] Error 127<br>
make[1]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'<br>
make: *** [all] Error 2</font><br>
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<div style="font-size:small;color:rgb(53,28,117)">What am I missing???</div>
<br>
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<div dir="ltr"><font size="2"><span style="color:rgb(53,28,117)"> </span></font><span style="color:rgb(53,28,117)"> Cheers,</span><font size="2"><span style="color:rgb(53,28,117)"><br>
Sylvain<br>
--<br>
</span><font size="2"><br>
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<div dir="ltr">On Thu, Sep 21, 2023 at 1:32 PM Lieber, Matt <<a href="mailto:lieber.31@osu.edu" target="_blank">lieber.31@osu.edu</a>> wrote:<br>
</div>
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<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Hi Sylvain,</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
Thank you for the report, we think we have a patch that can fix this issue. Please use the attached patch with --disable-f08 and let us know if you have any other questions.</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
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<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
<br>
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<div style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:12pt;color:rgb(0,0,0)">
-Matt</div>
<div id="m_-8196015484634552687x_m_-6350495816155039278m_1909443971633322999appendonsend"></div>
<hr style="display:inline-block;width:98%">
<div id="m_-8196015484634552687x_m_-6350495816155039278m_1909443971633322999divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Mvapich-discuss <<a href="mailto:mvapich-discuss-bounces@lists.osu.edu" target="_blank">mvapich-discuss-bounces@lists.osu.edu</a>>
on behalf of Korzennik, Sylvain via Mvapich-discuss <<a href="mailto:mvapich-discuss@lists.osu.edu" target="_blank">mvapich-discuss@lists.osu.edu</a>><br>
<b>Sent:</b> Tuesday, September 19, 2023 6:54 PM<br>
<b>To:</b> Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA) Libraries developed at NBCL/OSU <<a href="mailto:mvapich-discuss@lists.osu.edu" target="_blank">mvapich-discuss@lists.osu.edu</a>><br>
<b>Subject:</b> [Mvapich-discuss] ibmpifort.so: undefined reference to `CFI_is_contiguous'</font>
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I was able to build mvapich2-2. 3. 7-1 w/ nvidia's compiler ver 23. 5 or 23. 7 under CO7 (w/ same tweaks as when using ver 23. 3), but I can't compile a trivial MPI test program w/ either version: % mpif90 -o ring0f ring0f. o /share/apps/nvidia/Linux_x86_64/23. 5/mvapich2-2. 3. 7-1/lib/libmpifort. so:
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<div style="font-size:small;color:rgb(53,28,117)">I was able to build mvapich2-2.3.7-1 w/ nvidia's compiler ver 23.5 or 23.7 under CO7 (w/ same tweaks as when using ver 23.3), but I can't compile a trivial MPI test program w/ either version:</div>
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<div style="font-size:small"><font face="monospace" color="#0000ff">% mpif90 -o ring0f ring0f.o<br>
/share/apps/nvidia/Linux_x86_64/23.5/mvapich2-2.3.7-1/lib/libmpifort.so: undefined reference to `CFI_is_contiguous'</font><br>
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<div style="font-size:small;color:rgb(53,28,117)"><br>
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<div style="font-size:small;color:rgb(53,28,117)">or</div>
<div style="font-size:small;color:rgb(53,28,117)"><br>
</div>
<div style="font-size:small"><font face="monospace" color="#0000ff">% mpif90 -o ring0f ring0f.o<br>
/share/apps/nvidia/Linux_x86_64/23.7/mvapich2-2.3.7-1/lib/libmpifort.so: undefined reference to `CFI_is_contiguous'</font><br>
</div>
<div style="font-size:small;color:rgb(53,28,117)"><br>
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<div style="font-size:small;color:rgb(53,28,117)">Anyone ran into this and has a solution? Rebuilding w/ --disable-f08 in the config step does not help (based on
<a href="https://urldefense.com/v3/__https://github.com/pmodels/mpich/issues/6505__;!!KGKeukY!2u0ZW6taxuRSfFe8Dk9FewQ4ND7Y-Ju0qBVz8Px7kDWV693LGxXFKlcoAd77SHwXNULF6xYZ9Lli75GOIA1Lc3yIM33ujPVzm2KqxA$" target="_blank">
https://github.com/pmodels/mpich/issues/6505</a> for MPICH)</div>
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<div dir="ltr"><font size="2"><span style="color:rgb(53,28,117)"> </span></font><span style="color:rgb(53,28,117)"> Cheers,</span><font size="2"><span style="color:rgb(53,28,117)"><br>
Sylvain<br>
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