[mvapich-discuss] Mvapich building errors

[Subramoni, Hari]

Hi, Lorenzo.

Can you please try the following series of commands?

./autogen.sh
./configure …
make
make install

These are warnings seen during the autogen step. We had fixed this with the 2.3GA release. Can you please let us know if you still see the errors after you do these steps?

On a different note, if you are using the release tarball from our website, you need not do the autogen.sh (or the autoreconf -if) step. You can directly start from configure.

Best Regards,
Hari.

From: mvapich-discuss-bounces at cse.ohio-state.edu On Behalf Of Lorenzo Varriale
Sent: Wednesday, October 17, 2018 3:54 AM
To: mvapich-discuss at cse.ohio-state.edu <mvapich-discuss at mailman.cse.ohio-state.edu>
Subject: [mvapich-discuss] Mvapich building errors

Greetings Team,

We’re currently having issues in building several versions of mvapich on our cluster, the more we try, the less we achieve. Actually, we are at a loss, any suggestion is very appreciated.

Following, some details about errors and environment we have on our cluster:

MVAPICH2 V2.2rc1, 2.2, 2.3

##modules loaded

gcc 4.8.5
cuda 8.0

###command issues

autoreconf -f -i

./configure --prefix=/home/share/opt/mvapich2-2.2-gcc-485-cuda8 F77=gfortran FC=gfortran CPP=cpp CC=gcc CXX=c++ LDFLAGS="-L/lib -L/home/share/nvidia/cuda-8.0/lib64" --enable-cuda=basic --with-cuda=/home/share/nvidia/cuda-8.0

Make output error:

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# make
( cd . && rm -f .err unusederr.txt ; rm -rf .tmp )
( cd . && \
  ./maint/extracterrmsgs -careful=unusederr.txt \
                         -skip=src/util/multichannel/mpi.c \
                         `cat maint/errmsgdirs` > .tmp 2>.err )
( cd . && if test -s .err ; then rm -f .tmp ; cat .err ; exit 1 ; fi )
Warning: attempt to redefine **rdmacmmaxport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmmaxport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange %d %d.  Duplicate ignored.
Warning: attempt to redefine **activeports.  Duplicate ignored.
Warning: attempt to redefine **activeports %d.  Duplicate ignored.
Warning: attempt to redefine **ibv_get_device_name.  Duplicate ignored.
Warning: attempt to redefine **onesidedcomps.  Duplicate ignored.
Warning: attempt to redefine **portquery.  Duplicate ignored.
Warning: attempt to redefine **portquery %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmmaxport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmmaxport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange %d %d.  Duplicate ignored.
Warning: attempt to redefine **umadgetca.  Duplicate ignored.
Warning: attempt to redefine **umadgetrate.  Duplicate ignored.
Warning: attempt to redefine **umadinit.  Duplicate ignored.
make: *** [src/mpi/errhan/defmsg.h] Error 1

Other system infos:

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# uname -a
Linux cn01 3.10.0-514.el7.x86_64 #1 SMP Tue Nov 22 16:42:41 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# automake --version
automake (GNU automake) 1.13.4

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# rpm -qa | grep -i ofed
mlnx-ofa_kernel-3.4-OFED.3.4.2.0.0.1.g30039f7.rhel7u3.x86_64
knem-mlnx-1.1.2.90mlnx1-OFED.3.3.1.5.5.1.ga659703.rhel7u3.x86_64
kmod-isert-1.7-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
ofed-scripts-3.4-OFED.3.4.2.0.0.x86_64
libibverbs-utils-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libmlx5-devel-1.2.1mlnx1-OFED.3.4.1.0.0.34200.x86_64
librdmacm-utils-1.1.0mlnx-OFED.3.4.0.0.4.34200.x86_64
dapl-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64
kmod-mlnx-ofa_kernel-3.4-OFED.3.4.2.0.0.1.g30039f7.rhel7u3.x86_64
kmod-knem-mlnx-1.1.2.90mlnx1-OFED.3.3.1.5.5.1.ga659703.rhel7u3.x86_64
kmod-srp-1.6.1-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
kmod-mlnx-sdp-3.4-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
libibverbs-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libibverbs-devel-static-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libmlx4-1.2.1mlnx1-OFED.3.4.0.0.4.34200.x86_64
libmlx5-1.2.1mlnx1-OFED.3.4.1.0.0.34200.x86_64
libibcm-1.0.5mlnx2-OFED.3.4.0.0.4.34100.x86_64
librdmacm-1.1.0mlnx-OFED.3.4.0.0.4.34200.x86_64
librdmacm-devel-1.1.0mlnx-OFED.3.4.0.0.4.34200.x86_64
libsdp-devel-1.1.108-OFED.3.0.8.gfbd01df.34100.x86_64
dapl-devel-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64
dapl-utils-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64
mlnxofed-docs-3.4-2.0.0.0.noarch
mlnx-ofa_kernel-devel-3.4-OFED.3.4.2.0.0.1.g30039f7.rhel7u3.x86_64
kmod-iser-1.8.1-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
kmod-mlnx-rds-3.4-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
libibverbs-devel-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libmlx4-devel-1.2.1mlnx1-OFED.3.4.0.0.4.34200.x86_64
libibcm-devel-1.0.5mlnx2-OFED.3.4.0.0.4.34100.x86_64
ibacm-1.2.1mlnx1-OFED.3.4.0.1.5.34100.x86_64
libsdp-1.1.108-OFED.3.0.8.gfbd01df.34100.x86_64
dapl-devel-static-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64


Thanks in advance,

Lorenzo Varriale.



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