[mvapich-discuss] Mvapich building errors

[Lorenzo Varriale]

Greetings Team,

We’re currently having issues in building several versions of mvapich on our cluster, the more we try, the less we achieve. Actually, we are at a loss, any suggestion is very appreciated. 

Following, some details about errors and environment we have on our cluster:

MVAPICH2 V2.2rc1, 2.2, 2.3

##modules loaded

gcc 4.8.5
cuda 8.0

###command issues 

autoreconf -f -i

./configure --prefix=/home/share/opt/mvapich2-2.2-gcc-485-cuda8 F77=gfortran FC=gfortran CPP=cpp CC=gcc CXX=c++ LDFLAGS="-L/lib -L/home/share/nvidia/cuda-8.0/lib64" --enable-cuda=basic --with-cuda=/home/share/nvidia/cuda-8.0

Make output error:

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# make
( cd . && rm -f .err unusederr.txt ; rm -rf .tmp )
( cd . && \
  ./maint/extracterrmsgs -careful=unusederr.txt \
                         -skip=src/util/multichannel/mpi.c \
                         `cat maint/errmsgdirs` > .tmp 2>.err )
( cd . && if test -s .err ; then rm -f .tmp ; cat .err ; exit 1 ; fi )
Warning: attempt to redefine **rdmacmmaxport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmmaxport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange %d %d.  Duplicate ignored.
Warning: attempt to redefine **activeports.  Duplicate ignored.
Warning: attempt to redefine **activeports %d.  Duplicate ignored.
Warning: attempt to redefine **ibv_get_device_name.  Duplicate ignored.
Warning: attempt to redefine **onesidedcomps.  Duplicate ignored.
Warning: attempt to redefine **portquery.  Duplicate ignored.
Warning: attempt to redefine **portquery %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmmaxport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmmaxport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport.  Duplicate ignored.
Warning: attempt to redefine **rdmacmminport %d %d %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport.  Duplicate ignored.
Warning: attempt to redefine **rdmacminvalidport %d.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange.  Duplicate ignored.
Warning: attempt to redefine **rdmacmportrange %d %d.  Duplicate ignored.
Warning: attempt to redefine **umadgetca.  Duplicate ignored.
Warning: attempt to redefine **umadgetrate.  Duplicate ignored.
Warning: attempt to redefine **umadinit.  Duplicate ignored.
make: *** [src/mpi/errhan/defmsg.h] Error 1

Other system infos:

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# uname -a
Linux cn01 3.10.0-514.el7.x86_64 #1 SMP Tue Nov 22 16:42:41 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# automake --version
automake (GNU automake) 1.13.4

[root at cn01 mvapich2-2.2rc1-gcc-485-cuda8]# rpm -qa | grep -i ofed
mlnx-ofa_kernel-3.4-OFED.3.4.2.0.0.1.g30039f7.rhel7u3.x86_64
knem-mlnx-1.1.2.90mlnx1-OFED.3.3.1.5.5.1.ga659703.rhel7u3.x86_64
kmod-isert-1.7-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
ofed-scripts-3.4-OFED.3.4.2.0.0.x86_64
libibverbs-utils-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libmlx5-devel-1.2.1mlnx1-OFED.3.4.1.0.0.34200.x86_64
librdmacm-utils-1.1.0mlnx-OFED.3.4.0.0.4.34200.x86_64
dapl-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64
kmod-mlnx-ofa_kernel-3.4-OFED.3.4.2.0.0.1.g30039f7.rhel7u3.x86_64
kmod-knem-mlnx-1.1.2.90mlnx1-OFED.3.3.1.5.5.1.ga659703.rhel7u3.x86_64
kmod-srp-1.6.1-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
kmod-mlnx-sdp-3.4-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
libibverbs-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libibverbs-devel-static-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libmlx4-1.2.1mlnx1-OFED.3.4.0.0.4.34200.x86_64
libmlx5-1.2.1mlnx1-OFED.3.4.1.0.0.34200.x86_64
libibcm-1.0.5mlnx2-OFED.3.4.0.0.4.34100.x86_64
librdmacm-1.1.0mlnx-OFED.3.4.0.0.4.34200.x86_64
librdmacm-devel-1.1.0mlnx-OFED.3.4.0.0.4.34200.x86_64
libsdp-devel-1.1.108-OFED.3.0.8.gfbd01df.34100.x86_64
dapl-devel-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64
dapl-utils-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64
mlnxofed-docs-3.4-2.0.0.0.noarch
mlnx-ofa_kernel-devel-3.4-OFED.3.4.2.0.0.1.g30039f7.rhel7u3.x86_64
kmod-iser-1.8.1-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
kmod-mlnx-rds-3.4-OFED.3.4.1.0.6.1.g30039f7.rhel7u3.x86_64
libibverbs-devel-1.2.1mlnx1-OFED.3.4.0.1.4.34200.x86_64
libmlx4-devel-1.2.1mlnx1-OFED.3.4.0.0.4.34200.x86_64
libibcm-devel-1.0.5mlnx2-OFED.3.4.0.0.4.34100.x86_64
ibacm-1.2.1mlnx1-OFED.3.4.0.1.5.34100.x86_64
libsdp-1.1.108-OFED.3.0.8.gfbd01df.34100.x86_64
dapl-devel-static-2.1.9mlnx-OFED.3.3.0.0.6.34100.x86_64


Thanks in advance,

Lorenzo Varriale.

 


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