[mvapich-discuss] Compiling Mvapich2 with PGI Compilers

Fri Sep 5 08:29:04 EDT 2014

Thanks, Matt. Good info! I'll give it a shot.

Mark

On 09/05/14 08:16, Thompson, Matt (GSFC-610.1)[SCIENCE SYSTEMS AND 
APPLICATIONS INC] wrote:
> Mark, et al,
>
> I just tried a plain boring ./configure using PGI 14.6 on an RHEL 6.5
> box here (so roughly equivalent to CentOS 6.4) and it worked here.
>
> Well, I had to pass --with-device=ch3:nemesis (just a desktop machine,
> no Infiniband) and undefine F90 in my environment, but it worked.
>
> Looking at the config file, one thing you might want to see is if CPP is
> defined in your environment. In my PGI modules, I always specifically do
> not set CPP because it seems to often cause issues. For example, from
> your config.log:
>
>> configure:6160: checking how to run the C preprocessor
>> configure:6230: result: /app/navapps/pgi/14/linux86-64/14.6/bin/pgprepro
>> configure:6250: /app/navapps/pgi/14/linux86-64/14.6/bin/pgprepro
>> conftest.c
>> configure:6250: $? = 0
>
> It's using pgprepro. On my configure, it detected pgcc -E. You might
> also try CPP=cpp as well.
>
> If not that...maybe LD_LIBRARY_PATH isn't pointing to both PGI's lib and
> libso directory?
>
> Matt
>
>
> On 09/04/2014 03:25 PM, Mr. Mark L. Dotson (Contractor) wrote:
>> I tried using 2.0 and received the same error. Config.log is attached.
>>
>>
>>
>> Mark
>>
>>
>> On 09/04/14 15:12, Jonathan Perkins wrote:
>>> Thanks for providing the config.log.  I inspected it but its not clear
>>> to me why its failing.  It seems that my initial guess is not in play
>>> here.  Can you try mvapich2-2.0 and see if it fails configure as well?
>>>
>>> http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.0.tar.gz
>>>
>>>
>>>
>>> If it does fail, please also send that config.log.
>>>
>>> On Thu, Sep 04, 2014 at 02:44:02PM -0400, Mr. Mark L. Dotson
>>> (Contractor) wrote:
>>>> The config.log is attached.
>>>>
>>>> Thanks,
>>>>
>>>> Mark
>>>>
>>>>
>>>> On 09/04/14 14:36, Jonathan Perkins wrote:
>>>>> Hi Mark.  Can you send us your config.log?
>>>>>
>>>>> I think there is some library that cannot be loaded at runtime but is
>>>>> only manifesting itself when attempting the datatype checks.
>>>>>
>>>>> On Thu, Sep 04, 2014 at 12:41:16PM -0400, Mr. Mark L. Dotson
>>>>> (Contractor) wrote:
>>>>>> I am trying to compile mvapich2-2.0b on CentOS 6.4 with PGI compilers
>>>>>> 14.6 with a simple ./configure. These are the pertinent messages
>>>>>> for the
>>>>>> errors I am receiving:
>>>>>>
>>>>>> checking for size of Fortran type integer... configure: WARNING:
>>>>>> Unable
>>>>>> to compile the C routine for finding the size of a integer
>>>>>>
>>>>>> checking for size of Fortran type real... configure: WARNING:
>>>>>> Unable to
>>>>>> compile the C routine for finding the size of a real
>>>>>>
>>>>>> checking for size of Fortran type double precision... configure:
>>>>>> WARNING:
>>>>>> Unable to compile the C routine for finding the size of a double
>>>>>> precision
>>>>>>
>>>>>> checking whether integer*1 is supported... yes
>>>>>> checking whether integer*2 is supported... yes
>>>>>> checking whether integer*4 is supported... yes
>>>>>> checking whether integer*8 is supported... yes
>>>>>> checking whether integer*16 is supported... yes
>>>>>> checking whether real*4 is supported... yes
>>>>>> checking whether real*8 is supported... yes
>>>>>> checking whether real*16 is supported... yes
>>>>>> configure: error: Unable to configure with Fortran support because
>>>>>> configure could not determine the size of a Fortran INTEGER. Consider
>>>>>> setting CROSS_F77_SIZEOF_INTEGER to the length in bytes of a Fortran
>>>>>> INTEGER
>>>>>>
>>>>>> I've tried setting the suggested variable to 4 and 8, to no avail.
>>>>>> Would
>>>>>> anyone know what I can do to fix this?
>>>>>>
>>>>>> Thanks,
>>>>>>
>>>>>> Mark
>>>>>>
>>>>>> --
>>>>>> Mark Dotson
>>>>>> Systems Administrator
>>>>>> Lockheed-Martin
>>>>>> dotsonml.ctr at afrl.hpc.mil
>>>>>> _______________________________________________
>>>>>> mvapich-discuss mailing list
>>>>>> mvapich-discuss at cse.ohio-state.edu
>>>>>> http://mailman.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>>>>
>>>>
>>>>
>>>> --
>>>> Mark Dotson
>>>> Systems Administrator
>>>> Lockheed-Martin
>>>> dotsonml.ctr at afrl.hpc.mil
>>>
>>
>>
>>
>>
>> _______________________________________________
>> mvapich-discuss mailing list
>> mvapich-discuss at cse.ohio-state.edu
>> http://mailman.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>
>
>

-- 
Mark Dotson
Systems Administrator
Lockheed-Martin
dotsonml.ctr at afrl.hpc.mil