[mvapich-discuss] mvapich2-2.0b installation problem with Intel compilers
Jacques Menu
Jacques.Menu at epfl.ch
Wed Jan 8 04:21:35 EST 2014
Hello folks,
I tried to install with GCC and Intel, with the same configure command:
./configure \
--prefix=${INSTALL_DIR} \
\
--with-device=ch3:psm \
\
--with-pm=hydra \
--without-hwloc \
\
--enable-fc \
--enable-cxx \
\
--disable-checkerrors \
\
--enable-g=dbg --enable-debuginfo \
\
--with-thread-package=posix \
--enable-threads=runtime \
\
2>&1 | tee configure.log
What I get is this, which looks normal:
rpmbuild at bellatrix:~/BUILD/mvapich2-intel-2.0b-13.0.1 > ll src/env/
total 392
4 drwxr-xr-x 5 rpmbuild rpmbuild 4096 Jan 8 09:56 .
4 drwxr-xr-x 18 rpmbuild rpmbuild 4096 Jan 8 09:48 ..
4 drwxrwxr-x 2 rpmbuild rpmbuild 4096 Jan 8 09:56 .deps
0 -rw-rw-r-- 1 rpmbuild rpmbuild 0 Dec 20 10:59 .dirstamp
4 drwxrwxr-x 2 rpmbuild rpmbuild 4096 Dec 20 10:59 .libs
4 -rw-r--r-- 1 rpmbuild rpmbuild 2129 Nov 8 15:44 Makefile.mk
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Jan 8 09:48 cc_shlib.conf
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Jan 8 09:48 cxx_shlib.conf
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Jan 8 09:48 f77_shlib.conf
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Jan 8 09:48 fc_shlib.conf
12 -rw-rw-r-- 1 rpmbuild rpmbuild 10051 Jan 8 09:49 mpicc
12 -rw-rw-r-- 1 rpmbuild rpmbuild 10051 Jan 8 09:49 mpicc.bash
12 -rw-r--r-- 1 rpmbuild rpmbuild 9311 Nov 8 15:44 mpicc.bash.in
12 -rw-rw-r-- 1 rpmbuild rpmbuild 10204 Jan 8 09:49 mpicc.sh
12 -rw-r--r-- 1 rpmbuild rpmbuild 9461 Nov 8 15:44 mpicc.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4657 Nov 8 15:44 mpicc.txt
16 -rwxrwxr-x 1 rpmbuild rpmbuild 14491 Jan 8 09:56 mpichversion
4 -rw-r--r-- 1 rpmbuild rpmbuild 3497 Nov 8 15:44 mpichversion.c
12 -rw-rw-r-- 1 rpmbuild rpmbuild 12064 Jan 8 09:56 mpichversion.o
12 -rw-rw-r-- 1 rpmbuild rpmbuild 9604 Jan 8 09:49 mpicxx
12 -rw-rw-r-- 1 rpmbuild rpmbuild 9604 Jan 8 09:49 mpicxx.bash
12 -rw-r--r-- 1 rpmbuild rpmbuild 8872 Nov 8 15:44 mpicxx.bash.in
12 -rw-rw-r-- 1 rpmbuild rpmbuild 9756 Jan 8 09:49 mpicxx.sh
12 -rw-r--r-- 1 rpmbuild rpmbuild 9021 Nov 8 15:44 mpicxx.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4681 Nov 8 15:44 mpicxx.txt
8 -rw-r--r-- 1 rpmbuild rpmbuild 5333 Nov 8 15:44 mpiexec.txt
12 -rw-rw-r-- 1 rpmbuild rpmbuild 11694 Jan 8 09:49 mpif77
12 -rw-rw-r-- 1 rpmbuild rpmbuild 11694 Jan 8 09:49 mpif77.bash
12 -rw-r--r-- 1 rpmbuild rpmbuild 10961 Nov 8 15:44 mpif77.bash.in
12 -rw-rw-r-- 1 rpmbuild rpmbuild 11983 Jan 8 09:49 mpif77.sh
12 -rw-r--r-- 1 rpmbuild rpmbuild 11247 Nov 8 15:44 mpif77.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4450 Nov 8 15:44 mpif77.txt
16 -rw-rw-r-- 1 rpmbuild rpmbuild 13518 Jan 8 09:49 mpif90
16 -rw-rw-r-- 1 rpmbuild rpmbuild 13518 Jan 8 09:49 mpif90.bash
16 -rw-r--r-- 1 rpmbuild rpmbuild 12815 Nov 8 15:44 mpif90.bash.in
16 -rw-rw-r-- 1 rpmbuild rpmbuild 13618 Jan 8 09:49 mpif90.sh
16 -rw-r--r-- 1 rpmbuild rpmbuild 12912 Nov 8 15:44 mpif90.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4450 Nov 8 15:44 mpif90.txt
4 drwxr-xr-x 4 rpmbuild rpmbuild 4096 Jan 8 09:56 mpiname
4 -rw-rw-r-- 1 rpmbuild rpmbuild 832 Jan 8 09:49 mpixxx_opts.conf
4 -rw-r--r-- 1 rpmbuild rpmbuild 832 Nov 8 15:44 mpixxx_opts.conf.in
4 -rw-rw-r-- 1 rpmbuild rpmbuild 3430 Jan 8 09:49 parkill
4 -rw-r--r-- 1 rpmbuild rpmbuild 3423 Nov 8 15:44 parkill.in
4 -rwxr-xr-x 1 rpmbuild rpmbuild 2138 Nov 8 15:44 rmshm
rpmbuild at bellatrix:~/BUILD/mvapich2-gcc-2.0b-4.6.3 > ll src/env/
total 408
4 drwxr-xr-x 5 rpmbuild rpmbuild 4096 Dec 20 11:11 .
4 drwxr-xr-x 18 rpmbuild rpmbuild 4096 Dec 20 11:06 ..
4 drwxrwxr-x 2 rpmbuild rpmbuild 4096 Dec 20 11:11 .deps
0 -rw-rw-r-- 1 rpmbuild rpmbuild 0 Dec 20 11:11 .dirstamp
4 drwxrwxr-x 2 rpmbuild rpmbuild 4096 Dec 20 11:11 .libs
4 -rw-r--r-- 1 rpmbuild rpmbuild 2129 Nov 8 15:44 Makefile.mk
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Dec 20 11:06 cc_shlib.conf
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Dec 20 11:06 cxx_shlib.conf
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Dec 20 11:06 f77_shlib.conf
4 -rw-rw-r-- 1 rpmbuild rpmbuild 821 Dec 20 11:06 fc_shlib.conf
12 -rw-rw-r-- 1 rpmbuild rpmbuild 10048 Dec 20 11:06 mpicc
12 -rw-rw-r-- 1 rpmbuild rpmbuild 10048 Dec 20 11:06 mpicc.bash
12 -rw-r--r-- 1 rpmbuild rpmbuild 9311 Nov 8 15:44 mpicc.bash.in
12 -rw-rw-r-- 1 rpmbuild rpmbuild 10201 Dec 20 11:06 mpicc.sh
12 -rw-r--r-- 1 rpmbuild rpmbuild 9461 Nov 8 15:44 mpicc.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4657 Nov 8 15:44 mpicc.txt
20 -rwxrwxr-x 1 rpmbuild rpmbuild 18263 Dec 20 11:11 mpichversion
4 -rw-r--r-- 1 rpmbuild rpmbuild 3497 Nov 8 15:44 mpichversion.c
24 -rw-rw-r-- 1 rpmbuild rpmbuild 23792 Dec 20 11:11 mpichversion.o
12 -rw-rw-r-- 1 rpmbuild rpmbuild 9601 Dec 20 11:06 mpicxx
12 -rw-rw-r-- 1 rpmbuild rpmbuild 9601 Dec 20 11:06 mpicxx.bash
12 -rw-r--r-- 1 rpmbuild rpmbuild 8872 Nov 8 15:44 mpicxx.bash.in
12 -rw-rw-r-- 1 rpmbuild rpmbuild 9753 Dec 20 11:06 mpicxx.sh
12 -rw-r--r-- 1 rpmbuild rpmbuild 9021 Nov 8 15:44 mpicxx.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4681 Nov 8 15:44 mpicxx.txt
8 -rw-r--r-- 1 rpmbuild rpmbuild 5333 Nov 8 15:44 mpiexec.txt
12 -rw-rw-r-- 1 rpmbuild rpmbuild 11694 Dec 20 11:06 mpif77
12 -rw-rw-r-- 1 rpmbuild rpmbuild 11694 Dec 20 11:06 mpif77.bash
12 -rw-r--r-- 1 rpmbuild rpmbuild 10961 Nov 8 15:44 mpif77.bash.in
12 -rw-rw-r-- 1 rpmbuild rpmbuild 11983 Dec 20 11:06 mpif77.sh
12 -rw-r--r-- 1 rpmbuild rpmbuild 11247 Nov 8 15:44 mpif77.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4450 Nov 8 15:44 mpif77.txt
16 -rw-rw-r-- 1 rpmbuild rpmbuild 13518 Dec 20 11:06 mpif90
16 -rw-rw-r-- 1 rpmbuild rpmbuild 13518 Dec 20 11:06 mpif90.bash
16 -rw-r--r-- 1 rpmbuild rpmbuild 12815 Nov 8 15:44 mpif90.bash.in
16 -rw-rw-r-- 1 rpmbuild rpmbuild 13618 Dec 20 11:06 mpif90.sh
16 -rw-r--r-- 1 rpmbuild rpmbuild 12912 Nov 8 15:44 mpif90.sh.in
8 -rw-r--r-- 1 rpmbuild rpmbuild 4450 Nov 8 15:44 mpif90.txt
4 drwxr-xr-x 4 rpmbuild rpmbuild 4096 Dec 20 11:11 mpiname
4 -rw-rw-r-- 1 rpmbuild rpmbuild 832 Dec 20 11:06 mpixxx_opts.conf
4 -rw-r--r-- 1 rpmbuild rpmbuild 832 Nov 8 15:44 mpixxx_opts.conf.in
4 -rw-rw-r-- 1 rpmbuild rpmbuild 3430 Dec 20 11:06 parkill
4 -rw-r--r-- 1 rpmbuild rpmbuild 3423 Nov 8 15:44 parkill.in
4 -rwxr-xr-x 1 rpmbuild rpmbuild 2138 Nov 8 15:44 rmshm
But after installation, I find:
rpmbuild at bellatrix:~/BUILD > ll /opt/software/mvapich2/2.0b/intel/13.0.1/bin
total 4540
4 drwxr-xr-x 2 root root 4096 Jan 8 10:06 .
4 drwxr-xr-x 5 root root 4096 Dec 20 14:25 ..
1024 -rwxr-xr-x 1 root root 1047499 Jan 8 10:06 hydra_nameserver
1024 -rwxr-xr-x 1 root root 1045068 Jan 8 10:06 hydra_persist
1160 -rwxr-xr-x 1 root root 1185317 Jan 8 10:06 hydra_pmi_proxy
0 lrwxrwxrwx 1 root root 13 Jan 8 10:06 mpiexec -> mpiexec.hydra
1324 -rwxr-xr-x 1 root root 1354162 Jan 8 10:06 mpiexec.hydra
0 lrwxrwxrwx 1 root root 13 Jan 8 10:06 mpirun -> mpiexec.hydra
rpmbuild at bellatrix:~/BUILD > ll /opt/software/mvapich2/2.0b/gcc/4.6.3/bin
total 5232
4 drwxr-xr-x 2 root root 4096 Dec 20 11:28 .
4 drwxr-xr-x 7 root root 4096 Dec 20 11:28 ..
1132 -rwxr-xr-x 1 root root 1155875 Dec 20 11:28 hydra_nameserver
1128 -rwxr-xr-x 1 root root 1152261 Dec 20 11:28 hydra_persist
1328 -rwxr-xr-x 1 root root 1358171 Dec 20 11:28 hydra_pmi_proxy
0 lrwxrwxrwx 1 root root 6 Dec 20 11:28 mpic++ -> mpicxx
12 -rwxr-xr-x 1 root root 10127 Dec 20 11:28 mpicc
20 -rwxr-xr-x 1 root root 18263 Dec 20 11:28 mpichversion
12 -rwxr-xr-x 1 root root 9680 Dec 20 11:28 mpicxx
0 lrwxrwxrwx 1 root root 13 Dec 20 11:28 mpiexec -> mpiexec.hydra
1544 -rwxr-xr-x 1 root root 1578250 Dec 20 11:28 mpiexec.hydra
12 -rwxr-xr-x 1 root root 11773 Dec 20 11:28 mpif77
16 -rwxr-xr-x 1 root root 13597 Dec 20 11:28 mpif90
16 -rwxr-xr-x 1 root root 13585 Dec 20 11:28 mpiname
0 lrwxrwxrwx 1 root root 13 Dec 20 11:28 mpirun -> mpiexec.hydra
4 -rwxr-xr-x 1 root root 3430 Dec 20 11:28 parkill
Couldn’t find any explanation as to the missing files… Any hint is welcome!
Regards,
--
Dr Jacques MENU
HPC-DIT Support
http://hpc.epfl.ch/
mailto:1234 at epfl.ch
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