[mvapich-discuss] mvapich2-1.9a2 configure error...

[Jonathan Perkins]

Thanks, glad to hear it's working.

--
Jonathan Perkins (Sent from Atrix 2)
On Nov 9, 2012 7:37 PM, "Evren Yurtesen IB" <eyurtese at abo.fi> wrote:

> Thanks Jonathan, it seems to be working now! I will let you know if I find
> other problems.
>
> Thanks,
> Evren
>
> On Fri, 9 Nov 2012, Jonathan Perkins wrote:
>
>  Thanks for the note Evren.  I've taken a look at your issue and I found
>> the problematic area.
>>
>> Can you apply the attached patch at the top level of the mvapich2 source
>> using the following command.  Make sure to replace patch-file with
>> whatever the name of the downloaded patch is.
>>
>>    patch -p1 < patch-file
>>
>> Then you'll need to run ./autogen.sh.  This requires autoconf >= 2.67,
>> automake >= 1.12.3, and libtool >= 2.4.
>>
>>    ./autogen.sh
>>
>> After this you should be able to configure and compile mvapich2 as
>> expected.  Please let us know if this resolves your problem or if you
>> encounter any further issues.
>>
>> On Fri, Nov 09, 2012 at 03:30:41PM +0200, Evren Yurtesen IB wrote:
>>
>>> I am trying to configure mvapich2 with the following options:
>>>
>>> ./configure --prefix=/export/modules/apps/**mvapich2/1.9a2/gnu
>>> --enable-fast=all,O3 --enable-shared --enable-mpe --with-pmi=slurm
>>> --with-pm=no --with-valgrind=$VALGRIND_**INCLUDE
>>>
>>> The end result is:
>>>
>>> ...
>>> ...
>>> ...
>>> checking for malloc in -lefence... no
>>> checking for strstr... yes
>>> checking target system type... x86_64-unknown-linux-gnu
>>> checking for javah in user's PATH... not found
>>> checking for javah in user's PATH... not found
>>> configure: WARNING:  Invalid JNI include dir, exit!
>>> configure: WARNING: SLOG2SDK: No sub-package has been configured
>>> MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers"
>>> "src/graphics" "src/collchk" "src/slog2sdk" have been configured
>>> configure: ===== done with src/mpe2 configure =====
>>> checking size of OPA_ptr_t... 8
>>> checking the sizeof MPI_Offset... 8
>>> checking whether the Fortran Offset type works with Fortran 77... yes
>>> checking whether the Fortran Offset type works with Fortran 90... yes
>>> configure: creating ./config.lt
>>> config.lt: creating libtool
>>> checking that generated files are newer than configure... done
>>> configure: error: conditional "WANT_RDYNAMIC" was never defined.
>>> Usually this means the macro was only invoked conditionally.
>>> -bash-4.1$
>>>
>>>
>>> I could install 1.9a version earlier with the same options. I am not
>>> sure why configure is giving this error. Any ideas?
>>>
>>>
>>> Thanks,
>>> Evren
>>> ______________________________**_________________
>>> mvapich-discuss mailing list
>>> mvapich-discuss at cse.ohio-**state.edu<mvapich-discuss at cse.ohio-state.edu>
>>> http://mail.cse.ohio-state.**edu/mailman/listinfo/mvapich-**discuss<http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss>
>>>
>>>
>> --
>> Jonathan Perkins
>> http://www.cse.ohio-state.edu/**~perkinjo<http://www.cse.ohio-state.edu/~perkinjo>
>>
>>
>>
>
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