[mvapich-discuss] mvapich2-1.9a2 configure error...

[Evren Yurtesen IB]

Thanks Jonathan, it seems to be working now! I will let you know if I find 
other problems.

Thanks,
Evren

On Fri, 9 Nov 2012, Jonathan Perkins wrote:

> Thanks for the note Evren.  I've taken a look at your issue and I found
> the problematic area.
>
> Can you apply the attached patch at the top level of the mvapich2 source
> using the following command.  Make sure to replace patch-file with
> whatever the name of the downloaded patch is.
>
>    patch -p1 < patch-file
>
> Then you'll need to run ./autogen.sh.  This requires autoconf >= 2.67,
> automake >= 1.12.3, and libtool >= 2.4.
>
>    ./autogen.sh
>
> After this you should be able to configure and compile mvapich2 as
> expected.  Please let us know if this resolves your problem or if you
> encounter any further issues.
>
> On Fri, Nov 09, 2012 at 03:30:41PM +0200, Evren Yurtesen IB wrote:
>> I am trying to configure mvapich2 with the following options:
>>
>> ./configure --prefix=/export/modules/apps/mvapich2/1.9a2/gnu
>> --enable-fast=all,O3 --enable-shared --enable-mpe --with-pmi=slurm
>> --with-pm=no --with-valgrind=$VALGRIND_INCLUDE
>>
>> The end result is:
>>
>> ...
>> ...
>> ...
>> checking for malloc in -lefence... no
>> checking for strstr... yes
>> checking target system type... x86_64-unknown-linux-gnu
>> checking for javah in user's PATH... not found
>> checking for javah in user's PATH... not found
>> configure: WARNING:  Invalid JNI include dir, exit!
>> configure: WARNING: SLOG2SDK: No sub-package has been configured
>> MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers"
>> "src/graphics" "src/collchk" "src/slog2sdk" have been configured
>> configure: ===== done with src/mpe2 configure =====
>> checking size of OPA_ptr_t... 8
>> checking the sizeof MPI_Offset... 8
>> checking whether the Fortran Offset type works with Fortran 77... yes
>> checking whether the Fortran Offset type works with Fortran 90... yes
>> configure: creating ./config.lt
>> config.lt: creating libtool
>> checking that generated files are newer than configure... done
>> configure: error: conditional "WANT_RDYNAMIC" was never defined.
>> Usually this means the macro was only invoked conditionally.
>> -bash-4.1$
>>
>>
>> I could install 1.9a version earlier with the same options. I am not
>> sure why configure is giving this error. Any ideas?
>>
>>
>> Thanks,
>> Evren
>> _______________________________________________
>> mvapich-discuss mailing list
>> mvapich-discuss at cse.ohio-state.edu
>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>
>
> -- 
> Jonathan Perkins
> http://www.cse.ohio-state.edu/~perkinjo
>
>