[mvapich-discuss] osu-microbenchmarks-3.6 install issues

Hung-Sheng Tsao (LaoTsao) Ph.D laotsao at gmail.com
Tue Jul 24 07:26:14 EDT 2012 

hi
may be you should point path to mvapich instead of openmpi
regards


Sent from my iPad

On Jul 24, 2012, at 3:15, Gerald Trout <trout623 at yahoo.com> wrote:

> Hi, 
> 
> I am attempting to install osu-microbenchmarks-3.6 on Centos 5.8. I am stuck with the following failure. Would greatly appreciate suggestions on getting past this. 
> 
> Thank you, 
> 
> 
> 
> [root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# ./configure CC=/usr/lib64/openmpi/1.4-gcc/bin/mpicc
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... /bin/mkdir -p
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables... 
> checking whether we are cross compiling... configure: error: in `/tmp/osu-micro-benchmarks-3.6':
> configure: error: cannot run C compiled programs.
> If you meant to cross compile, use `--host'.
> See `config.log' for more details
> [root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# 
> 
> [root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# cat config.log
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
> 
> It was created by OSU-Micro-Benchmarks configure 3.6, which was
> generated by GNU Autoconf 2.68.  Invocation command line was
> 
>   $ ./configure CC=/usr/lib64/openmpi/1.4-gcc/bin/mpicc
> 
> ## --------- ##
> ## Platform. ##
> ## --------- ##
> 
> hostname = dc1-poc-rack1-srv05
> uname -m = x86_64
> uname -r = 2.6.18-308.11.1.el5
> uname -s = Linux
> uname -v = #1 SMP Tue Jul 10 08:48:43 EDT 2012
> 
> /usr/bin/uname -p = unknown
> /bin/uname -X     = unknown
> 
> /bin/arch              = x86_64
> /usr/bin/arch -k       = unknown
> /usr/convex/getsysinfo = unknown
> /usr/bin/hostinfo      = unknown
> /bin/machine           = unknown
> /usr/bin/oslevel       = unknown
> /bin/universe          = unknown
> 
> PATH: /root/bin
> PATH: /opt/bin
> PATH: /usr/kerberos/sbin
> PATH: /usr/kerberos/bin
> PATH: /usr/local/sbin
> PATH: /usr/local/bin
> PATH: /sbin
> PATH: /bin
> PATH: /usr/sbin
> PATH: /usr/bin
> 
> 
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
> 
> configure:2186: checking for a BSD-compatible install
> configure:2254: result: /usr/bin/install -c
> configure:2265: checking whether build environment is sane
> configure:2315: result: yes
> configure:2456: checking for a thread-safe mkdir -p
> configure:2495: result: /bin/mkdir -p
> configure:2508: checking for gawk
> configure:2524: found /bin/gawk
> configure:2535: result: gawk
> configure:2546: checking whether make sets $(MAKE)
> configure:2568: result: yes
> configure:2810: checking for C compiler version
> configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc --version >&5
> gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52)
> Copyright (C) 2006 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
> 
> configure:2830: $? = 0
> configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -v >&5
> Using built-in specs.
> Target: x86_64-redhat-linux
> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --disable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux
> Thread model: posix
> gcc version 4.1.2 20080704 (Red Hat 4.1.2-52)
> configure:2830: $? = 0
> configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -V >&5
> gcc: '-V' option must have argument
> configure:2830: $? = 1
> configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -qversion >&5
> gcc: unrecognized option '-qversion'
> gcc: no input files
> configure:2830: $? = 1
> configure:2850: checking whether the C compiler works
> configure:2872: /usr/lib64/openmpi/1.4-gcc/bin/mpicc    conftest.c  >&5
> configure:2876: $? = 0
> configure:2924: result: yes
> configure:2927: checking for C compiler default output file name
> configure:2929: result: a.out
> configure:2935: checking for suffix of executables
> configure:2942: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -o conftest    conftest.c  >&5
> configure:2946: $? = 0
> configure:2968: result: 
> configure:2990: checking whether we are cross compiling
> configure:2998: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -o conftest    conftest.c  >&5
> configure:3002: $? = 0
> configure:3009: ./conftest
> ./conftest: error while loading shared libraries: libmpi.so.0: cannot open shared object file: No such file or directory
> configure:3013: $? = 127
> configure:3020: error: in `/tmp/osu-micro-benchmarks-3.6':
> configure:3022: error: cannot run C compiled programs.
> If you meant to cross compile, use `--host'.
> See `config.log' for more details
> 
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
> 
> ac_cv_env_CC_set=set
> ac_cv_env_CC_value=/usr/lib64/openmpi/1.4-gcc/bin/mpicc
> ac_cv_env_CFLAGS_set=
> ac_cv_env_CFLAGS_value=
> ac_cv_env_CPPFLAGS_set=
> ac_cv_env_CPPFLAGS_value=
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_LDFLAGS_set=
> ac_cv_env_LDFLAGS_value=
> ac_cv_env_LIBS_set=
> ac_cv_env_LIBS_value=
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_path_install='/usr/bin/install -c'
> ac_cv_path_mkdir=/bin/mkdir
> ac_cv_prog_AWK=gawk
> ac_cv_prog_make_make_set=yes
> 
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
> 
> ACLOCAL='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run aclocal-1.11'
> AMDEPBACKSLASH=''
> AMDEP_FALSE=''
> AMDEP_TRUE=''
> AMTAR='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run tar'
> AUTOCONF='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run autoconf'
> AUTOHEADER='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run autoheader'
> AUTOMAKE='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run automake-1.11'
> AWK='gawk'
> CC='/usr/lib64/openmpi/1.4-gcc/bin/mpicc'
> CCDEPMODE=''
> CFLAGS=''
> CPP=''
> CPPFLAGS=''
> CUDA_FALSE=''
> CUDA_TRUE=''
> CYGPATH_W='echo'
> DEFS=''
> DEPDIR=''
> ECHO_C=''
> ECHO_N='-n'
> ECHO_T=''
> EGREP=''
> EXEEXT=''
> GREP=''
> INSTALL_DATA='${INSTALL} -m 644'
> INSTALL_PROGRAM='${INSTALL}'
> INSTALL_SCRIPT='${INSTALL}'
> INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
> LDFLAGS=''
> LIBOBJS=''
> LIBS=''
> LTLIBOBJS=''
> MAKEINFO='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run makeinfo'
> MKDIR_P='/bin/mkdir -p'
> MPI2_LIBRARY_FALSE=''
> MPI2_LIBRARY_TRUE=''
> OBJEXT=''
> PACKAGE='osu-micro-benchmarks'
> PACKAGE_BUGREPORT='mvapich-discuss at cse.ohio-state.edu'
> PACKAGE_NAME='OSU-Micro-Benchmarks'
> PACKAGE_STRING='OSU-Micro-Benchmarks 3.6'
> PACKAGE_TARNAME='osu-micro-benchmarks'
> PACKAGE_URL=''
> PACKAGE_VERSION='3.6'
> PATH_SEPARATOR=':'
> SET_MAKE=''
> SHELL='/bin/sh'
> STRIP=''
> VERSION='3.6'
> ac_ct_CC=''
> am__EXEEXT_FALSE=''
> am__EXEEXT_TRUE=''
> am__fastdepCC_FALSE=''
> am__fastdepCC_TRUE=''
> am__include=''
> am__isrc=''
> am__leading_dot='.'
> am__quote=''
> am__tar='${AMTAR} chof - "$$tardir"'
> am__untar='${AMTAR} xf -'
> bindir='${exec_prefix}/bin'
> build_alias=''
> datadir='${datarootdir}'
> datarootdir='${prefix}/share'
> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
> dvidir='${docdir}'
> exec_prefix='NONE'
> host_alias=''
> htmldir='${docdir}'
> includedir='${prefix}/include'
> infodir='${datarootdir}/info'
> install_sh='${SHELL} /tmp/osu-micro-benchmarks-3.6/install-sh'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localedir='${datarootdir}/locale'
> localstatedir='${prefix}/var'
> mandir='${datarootdir}/man'
> mkdir_p='/bin/mkdir -p'
> oldincludedir='/usr/include'
> pdfdir='${docdir}'
> prefix='NONE'
> program_transform_name='s,x,x,'
> psdir='${docdir}'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target_alias=''
> 
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
> 
> /* confdefs.h */
> #define PACKAGE_NAME "OSU-Micro-Benchmarks"
> #define PACKAGE_TARNAME "osu-micro-benchmarks"
> #define PACKAGE_VERSION "3.6"
> #define PACKAGE_STRING "OSU-Micro-Benchmarks 3.6"
> #define PACKAGE_BUGREPORT "mvapich-discuss at cse.ohio-state.edu"
> #define PACKAGE_URL ""
> #define PACKAGE "osu-micro-benchmarks"
> #define VERSION "3.6"
> 
> configure: exit 1
> [root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# 
> _______________________________________________
> mvapich-discuss mailing list
> mvapich-discuss at cse.ohio-state.edu
> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
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