[mvapich-discuss] osu-microbenchmarks-3.6 install issues

Tue Jul 24 03:15:53 EDT 2012

Hi, 

I am attempting to install osu-microbenchmarks-3.6 on Centos 5.8. I am stuck with the following failure. Would greatly appreciate suggestions on getting past this. 

Thank you, 

[root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# ./configure CC=/usr/lib64/openmpi/1.4-gcc/bin/mpicc
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... configure: error: in `/tmp/osu-micro-benchmarks-3.6':
configure: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.
See `config.log' for more details
[root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# 

[root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# cat config.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by OSU-Micro-Benchmarks configure 3.6, which was
generated by GNU Autoconf 2.68.  Invocation command line was

  $ ./configure CC=/usr/lib64/openmpi/1.4-gcc/bin/mpicc

## --------- ##
## Platform. ##
## --------- ##

hostname = dc1-poc-rack1-srv05
uname -m = x86_64
uname -r = 2.6.18-308.11.1.el5
uname -s = Linux
uname -v = #1 SMP Tue Jul 10 08:48:43 EDT 2012

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /root/bin
PATH: /opt/bin
PATH: /usr/kerberos/sbin
PATH: /usr/kerberos/bin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /sbin
PATH: /bin
PATH: /usr/sbin
PATH: /usr/bin

## ----------- ##
## Core tests. ##
## ----------- ##

configure:2186: checking for a BSD-compatible install
configure:2254: result: /usr/bin/install -c
configure:2265: checking whether build environment is sane
configure:2315: result: yes
configure:2456: checking for a thread-safe mkdir -p
configure:2495: result: /bin/mkdir -p
configure:2508: checking for gawk
configure:2524: found /bin/gawk
configure:2535: result: gawk
configure:2546: checking whether make sets $(MAKE)
configure:2568: result: yes
configure:2810: checking for C compiler version
configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc --version >&5
gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2830: $? = 0
configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --disable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20080704 (Red Hat 4.1.2-52)
configure:2830: $? = 0
configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -V >&5
gcc: '-V' option must have argument
configure:2830: $? = 1
configure:2819: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:2830: $? = 1
configure:2850: checking whether the C compiler works
configure:2872: /usr/lib64/openmpi/1.4-gcc/bin/mpicc    conftest.c  >&5
configure:2876: $? = 0
configure:2924: result: yes
configure:2927: checking for C compiler default output file name
configure:2929: result: a.out
configure:2935: checking for suffix of executables
configure:2942: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -o conftest    conftest.c  >&5
configure:2946: $? = 0
configure:2968: result: 
configure:2990: checking whether we are cross compiling
configure:2998: /usr/lib64/openmpi/1.4-gcc/bin/mpicc -o conftest    conftest.c  >&5
configure:3002: $? = 0
configure:3009: ./conftest
./conftest: error while loading shared libraries: libmpi.so.0: cannot open shared object file: No such file or directory
configure:3013: $? = 127
configure:3020: error: in `/tmp/osu-micro-benchmarks-3.6':
configure:3022: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.
See `config.log' for more details

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_env_CC_set=set
ac_cv_env_CC_value=/usr/lib64/openmpi/1.4-gcc/bin/mpicc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_make_make_set=yes

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run aclocal-1.11'
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE=''
AMTAR='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run tar'
AUTOCONF='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run autoconf'
AUTOHEADER='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run autoheader'
AUTOMAKE='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run automake-1.11'
AWK='gawk'
CC='/usr/lib64/openmpi/1.4-gcc/bin/mpicc'
CCDEPMODE=''
CFLAGS=''
CPP=''
CPPFLAGS=''
CUDA_FALSE=''
CUDA_TRUE=''
CYGPATH_W='echo'
DEFS=''
DEPDIR=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
EXEEXT=''
GREP=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /tmp/osu-micro-benchmarks-3.6/missing --run makeinfo'
MKDIR_P='/bin/mkdir -p'
MPI2_LIBRARY_FALSE=''
MPI2_LIBRARY_TRUE=''
OBJEXT=''
PACKAGE='osu-micro-benchmarks'
PACKAGE_BUGREPORT='mvapich-discuss at cse.ohio-state.edu'
PACKAGE_NAME='OSU-Micro-Benchmarks'
PACKAGE_STRING='OSU-Micro-Benchmarks 3.6'
PACKAGE_TARNAME='osu-micro-benchmarks'
PACKAGE_URL=''
PACKAGE_VERSION='3.6'
PATH_SEPARATOR=':'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
VERSION='3.6'
ac_ct_CC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__include=''
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /tmp/osu-micro-benchmarks-3.6/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "OSU-Micro-Benchmarks"
#define PACKAGE_TARNAME "osu-micro-benchmarks"
#define PACKAGE_VERSION "3.6"
#define PACKAGE_STRING "OSU-Micro-Benchmarks 3.6"
#define PACKAGE_BUGREPORT "mvapich-discuss at cse.ohio-state.edu"
#define PACKAGE_URL ""
#define PACKAGE "osu-micro-benchmarks"
#define VERSION "3.6"

configure: exit 1
[root at dc1-poc-rack1-srv05 osu-micro-benchmarks-3.6]# 
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