[mvapich-discuss] rpl_malloc error

Wed Oct 19 17:36:48 EDT 2011

Hi Dan.  Does this problem occur with all versions of the intel
compiler or only with intel 12?  I haven't been able to reproduce this
issue personally but I think it may be related to having both a
previous version of the intel compilers in my path in addition to
intel 12.  Does this case apply to you?

We're still looking into this but it may be helpful if you can forward
your config.log file from the osu_benchmarks directory as well.
Thanks.

On Wed, Oct 19, 2011 at 1:50 PM, Dan Kokron <daniel.kokron at nasa.gov> wrote:
> I am seeing the same 'rpl_malloc' error using mvapich2-1.7
> (http://mvapich.cse.ohio-state.edu/download/mvapich2/mvapich2-1.7.tgz)
>
> under
> Intel(R) 64, Version 12.1.0.233 Build 20110811
>
> My config command is
> ./configure CC=icc CXX=icpc F77=ifort FC=ifort CFLAGS=-fpic
> CXXFLAGS=-fpic FFLAGS=-fpic FCFLAGS=-fpic
> --prefix=/u/dkokron/play/mvapich2-1.7/install/12.1.0.233 --enable-f77
> --enable-fc --enable-cxx --enable-romio --with-file-system=lustre
> --enable-threads=default --with-device=ch3:mrail --with-rdma=gen2
> --with-hwloc -disable-multi-aliases -enable-xrc=yes -enable-hybrid
>
>
> ../bin/mpicc -DPACKAGE_NAME=\"OSU-Micro-Benchmarks\" -DPACKAGE_TARNAME=
> \"osu-micro-benchmarks\" -DPACKAGE_VERSION=\"3.4\" -DPACKAGE_STRING=
> \"OSU-Micro-Benchmarks\ 3.4\" -DPACKAGE_BUGREPORT=
> \"mvapich-discuss at cse.ohio-state.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=
> \"osu-micro-benchmarks\" -DVERSION=\"3.4\" -DSTDC_HEADERS=1
> -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
> -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
> -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1
> -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_TIME_H=1
> -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=0 -Dmalloc=rpl_malloc
> -DHAVE_GETPAGESIZE=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_SQRT=1
> -DFIELD_WIDTH=20 -DFLOAT_PRECISION=2 -I.   -I ../include  -g -O2 -c
> osu_alltoall.c
> ../bin/mpicc  -g -O2  -L ../lib
> -Wl,-rpath=/u/dkokron/play/mvapich2-1.7/install/12.1.0.233/lib -o
> osu_alltoall osu_alltoall.o
> osu_alltoall.o: In function `main':
> /home1/dkokron/play/mvapich2-1.7/osu_benchmarks/osu_alltoall.c:82:
> undefined reference to `rpl_malloc'
> /home1/dkokron/play/mvapich2-1.7/osu_benchmarks/osu_alltoall.c:91:
> undefined reference to `rpl_malloc'
>
> Just to be sure.
>
> bin/mpicc -V
> Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R)
> 64, Version 12.1.0.233 Build 20110811
> Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.
>
>
> On Fri, 2011-10-14 at 14:10 -0500, Jonathan Perkins wrote:
>> It looks like you may be hitting a different error for 1.7rc2 compared
>> to 1.6.  Can you send me the config.log from both the top level
>> directory and the osu_benchmarks sub directory.
>>
>> Also can you provide the exact steps needed to reproduce this?  I've
>> quickly tried both 1.6 and 1.7rc2 with the intel12 compilers and I was
>> unable to see this problem.
>>
>> On Fri, Oct 14, 2011 at 1:05 PM, Albino A. Aveleda <bino at coc.ufrj.br> wrote:
>> > Hi All,
>> >
>> > I am using SLES11SP1 and below you have more details about the error.
>> >
>> > Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 12.1.0.233 Build 20110811
>> > Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.
>> > configure:2761: $? = 0
>> > configure:2750: ../bin/mpicc -qversion >&5
>> > icc: command line warning #10006: ignoring unknown option '-qversion'
>> > /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/crt1.o: In function `_start':
>> > /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main'
>> > configure:2761: $? = 1
>> > configure:2781: checking whether the C compiler works
>> > configure:2803: ../bin/mpicc  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
>> > configure:2807: $? = 0
>> > configure:2855: result: yes
>> > configure:2858: checking for C compiler default output file name
>> > configure:2860: result: a.out
>> > configure:2866: checking for suffix of executables
>> > configure:2873: ../bin/mpicc -o conftest  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
>> > configure:2877: $? = 0
>> > configure:2899: result:
>> > configure:2921: checking whether we are cross compiling
>> > configure:2929: ../bin/mpicc -o conftest  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
>> > configure:2933: $? = 0
>> > configure:2940: ./conftest
>> > /sw/src/mvapich2/mvapich2-1.7rc2/osu_benchmarks/configure: line 2942: 31101 Segmentation fault      ./conftest$ac_cv_exeext
>> > configure:2944: $? = 139
>> > configure:2951: error: in `/sw/src/mvapich2/mvapich2-1.7rc2/osu_benchmarks':
>> > configure:2953: error: cannot run C compiled programs.
>> >
>> > Regards,
>> >
>> > ----- Original Message -----
>> > From: "Albino A. Aveleda" <bino at coc.ufrj.br>
>> > To: mvapich-discuss at cse.ohio-state.edu
>> > Sent: Friday, October 14, 2011 9:30:18 AM
>> > Subject: [mvapich-discuss] rpl_malloc error
>> >
>> > Hi All,
>> >
>> > I compiled the mvapich2-1.6 with gcc witout problem, but
>> > when I try to compile with intel compiler version 12 I
>> > receive this error.
>> >
>> > make[2]: Entering directory `/sw/src/mvapich2/mvapich2-1.6/osu_benchmarks'
>> > ../bin/mpicc  -g -O2  -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.6-intel/lib -o osu_alltoall osu_alltoall.o
>> > osu_alltoall.o: In function `main':
>> > /sw/src/mvapich2/mvapich2-1.6/osu_benchmarks/osu_alltoall.c:69: undefined reference to `rpl_malloc'
>> > /sw/src/mvapich2/mvapich2-1.6/osu_benchmarks/osu_alltoall.c:78: undefined reference to `rpl_malloc'
>> > make[2]: *** [osu_alltoall] Error 1
>> > make[2]: Leaving directory `/sw/src/mvapich2/mvapich2-1.6/osu_benchmarks'
>> > make[1]: *** [all-postamble] Error 2
>> > make[1]: Leaving directory `/sw/src/mvapich2/mvapich2-1.6'
>> > make: *** [all-redirect] Error 2
>> >
>> >
>> > How do I fix this?
>> >
>> > Regards,
>> > Bibo
>> > _______________________________________________
>> > mvapich-discuss mailing list
>> > mvapich-discuss at cse.ohio-state.edu
>> > http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>> >
>> > --
>> >
>> > __________________________________________________
>> > Albino A. Aveleda                 bino at coc.ufrj.br
>> > System Engineer                   +55 21 2562-8080
>> > PEC-COPPE/UFRJ                    +55 21 2562-8465
>> > Federal University of Rio de Janeiro (UFRJ)
>> > _______________________________________________
>> > mvapich-discuss mailing list
>> > mvapich-discuss at cse.ohio-state.edu
>> > http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>> >
>> >
>>
>>
>>
>> --
>> Jonathan Perkins
>> http://www.cse.ohio-state.edu/~perkinjo
>>
>> _______________________________________________
>> mvapich-discuss mailing list
>> mvapich-discuss at cse.ohio-state.edu
>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
> --
> Dan Kokron
> Global Modeling and Assimilation Office, Code 610.1
> NASA Goddard Space Flight Center
> Greenbelt, MD 20771 USA
> Daniel.S.Kokron at nasa.gov
> Phone: (301) 614-5192
> Fax:   (301) 614-5304
>
>

-- 
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo