[mvapich-discuss] rpl_malloc error

Wed Oct 19 13:50:31 EDT 2011

I am seeing the same 'rpl_malloc' error using mvapich2-1.7
(http://mvapich.cse.ohio-state.edu/download/mvapich2/mvapich2-1.7.tgz)

under
Intel(R) 64, Version 12.1.0.233 Build 20110811

My config command is
./configure CC=icc CXX=icpc F77=ifort FC=ifort CFLAGS=-fpic
CXXFLAGS=-fpic FFLAGS=-fpic FCFLAGS=-fpic
--prefix=/u/dkokron/play/mvapich2-1.7/install/12.1.0.233 --enable-f77
--enable-fc --enable-cxx --enable-romio --with-file-system=lustre
--enable-threads=default --with-device=ch3:mrail --with-rdma=gen2
--with-hwloc -disable-multi-aliases -enable-xrc=yes -enable-hybrid

../bin/mpicc -DPACKAGE_NAME=\"OSU-Micro-Benchmarks\" -DPACKAGE_TARNAME=
\"osu-micro-benchmarks\" -DPACKAGE_VERSION=\"3.4\" -DPACKAGE_STRING=
\"OSU-Micro-Benchmarks\ 3.4\" -DPACKAGE_BUGREPORT=
\"mvapich-discuss at cse.ohio-state.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=
\"osu-micro-benchmarks\" -DVERSION=\"3.4\" -DSTDC_HEADERS=1
-DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
-DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_TIME_H=1
-DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=0 -Dmalloc=rpl_malloc
-DHAVE_GETPAGESIZE=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_SQRT=1
-DFIELD_WIDTH=20 -DFLOAT_PRECISION=2 -I.   -I ../include  -g -O2 -c
osu_alltoall.c
../bin/mpicc  -g -O2  -L ../lib
-Wl,-rpath=/u/dkokron/play/mvapich2-1.7/install/12.1.0.233/lib -o
osu_alltoall osu_alltoall.o 
osu_alltoall.o: In function `main':
/home1/dkokron/play/mvapich2-1.7/osu_benchmarks/osu_alltoall.c:82:
undefined reference to `rpl_malloc'
/home1/dkokron/play/mvapich2-1.7/osu_benchmarks/osu_alltoall.c:91:
undefined reference to `rpl_malloc'

Just to be sure.

On Fri, 2011-10-14 at 14:10 -0500, Jonathan Perkins wrote:
> It looks like you may be hitting a different error for 1.7rc2 compared
> to 1.6.  Can you send me the config.log from both the top level
> directory and the osu_benchmarks sub directory.
> 
> Also can you provide the exact steps needed to reproduce this?  I've
> quickly tried both 1.6 and 1.7rc2 with the intel12 compilers and I was
> unable to see this problem.
> 
> On Fri, Oct 14, 2011 at 1:05 PM, Albino A. Aveleda <bino at coc.ufrj.br> wrote:
> > Hi All,
> >
> > I am using SLES11SP1 and below you have more details about the error.
> >
> > Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 12.1.0.233 Build 20110811
> > Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.
> > configure:2761: $? = 0
> > configure:2750: ../bin/mpicc -qversion >&5
> > icc: command line warning #10006: ignoring unknown option '-qversion'
> > /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/crt1.o: In function `_start':
> > /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main'
> > configure:2761: $? = 1
> > configure:2781: checking whether the C compiler works
> > configure:2803: ../bin/mpicc  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
> > configure:2807: $? = 0
> > configure:2855: result: yes
> > configure:2858: checking for C compiler default output file name
> > configure:2860: result: a.out
> > configure:2866: checking for suffix of executables
> > configure:2873: ../bin/mpicc -o conftest  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
> > configure:2877: $? = 0
> > configure:2899: result:
> > configure:2921: checking whether we are cross compiling
> > configure:2929: ../bin/mpicc -o conftest  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
> > configure:2933: $? = 0
> > configure:2940: ./conftest
> > /sw/src/mvapich2/mvapich2-1.7rc2/osu_benchmarks/configure: line 2942: 31101 Segmentation fault      ./conftest$ac_cv_exeext
> > configure:2944: $? = 139
> > configure:2951: error: in `/sw/src/mvapich2/mvapich2-1.7rc2/osu_benchmarks':
> > configure:2953: error: cannot run C compiled programs.
> >
> > Regards,
> >
> > ----- Original Message -----
> > From: "Albino A. Aveleda" <bino at coc.ufrj.br>
> > To: mvapich-discuss at cse.ohio-state.edu
> > Sent: Friday, October 14, 2011 9:30:18 AM
> > Subject: [mvapich-discuss] rpl_malloc error
> >
> > Hi All,
> >
> > I compiled the mvapich2-1.6 with gcc witout problem, but
> > when I try to compile with intel compiler version 12 I
> > receive this error.
> >
> > make[2]: Entering directory `/sw/src/mvapich2/mvapich2-1.6/osu_benchmarks'
> > ../bin/mpicc  -g -O2  -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.6-intel/lib -o osu_alltoall osu_alltoall.o
> > osu_alltoall.o: In function `main':
> > /sw/src/mvapich2/mvapich2-1.6/osu_benchmarks/osu_alltoall.c:69: undefined reference to `rpl_malloc'
> > /sw/src/mvapich2/mvapich2-1.6/osu_benchmarks/osu_alltoall.c:78: undefined reference to `rpl_malloc'
> > make[2]: *** [osu_alltoall] Error 1
> > make[2]: Leaving directory `/sw/src/mvapich2/mvapich2-1.6/osu_benchmarks'
> > make[1]: *** [all-postamble] Error 2
> > make[1]: Leaving directory `/sw/src/mvapich2/mvapich2-1.6'
> > make: *** [all-redirect] Error 2
> >
> >
> > How do I fix this?
> >
> > Regards,
> > Bibo
> > _______________________________________________
> > mvapich-discuss mailing list
> > mvapich-discuss at cse.ohio-state.edu
> > http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
> >
> > --
> >
> > __________________________________________________
> > Albino A. Aveleda                 bino at coc.ufrj.br
> > System Engineer                   +55 21 2562-8080
> > PEC-COPPE/UFRJ                    +55 21 2562-8465
> > Federal University of Rio de Janeiro (UFRJ)
> > _______________________________________________
> > mvapich-discuss mailing list
> > mvapich-discuss at cse.ohio-state.edu
> > http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
> >
> >
> 
> 
> 
> -- 
> Jonathan Perkins
> http://www.cse.ohio-state.edu/~perkinjo
> 
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-- 
Dan Kokron
Global Modeling and Assimilation Office, Code 610.1
NASA Goddard Space Flight Center
Greenbelt, MD 20771 USA
Daniel.S.Kokron at nasa.gov
Phone: (301) 614-5192
Fax:   (301) 614-5304