[mvapich-discuss] rpl_malloc error

[Albino A. Aveleda]

Hi Jonathan,

I used this script to compile mvpich2-1.6.

#!/bin/bash
INST=$(basename $(pwd) | sed 's/mvapich2-//')
F77=ifort F90=ifort CC=icc CXX=icpc CFLAGS=-fPIC FFLAGS=-fPIC F90FLAGS=-fPIC LDFLAGS=-fPIC \
./configure --prefix=/sw/mpi/mvapich2/$INST-intel --with-rdma=gen2 --enable-romio --enable-sharedlibs=gcc

Both config.log are on attachment.

Best regards,
Bibo

----- Mensagem original -----
De: "Jonathan Perkins" <perkinjo at cse.ohio-state.edu>
Para: "Albino A. Aveleda" <bino at coc.ufrj.br>
Cc: mvapich-discuss at cse.ohio-state.edu
Enviadas: Sexta-feira, 14 de Outubro de 2011 16:10:12
Assunto: Re: [mvapich-discuss] rpl_malloc error

It looks like you may be hitting a different error for 1.7rc2 compared
to 1.6.  Can you send me the config.log from both the top level
directory and the osu_benchmarks sub directory.

Also can you provide the exact steps needed to reproduce this?  I've
quickly tried both 1.6 and 1.7rc2 with the intel12 compilers and I was
unable to see this problem.

On Fri, Oct 14, 2011 at 1:05 PM, Albino A. Aveleda <bino at coc.ufrj.br> wrote:
> Hi All,
>
> I am using SLES11SP1 and below you have more details about the error.
>
> Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 12.1.0.233 Build 20110811
> Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.
> configure:2761: $? = 0
> configure:2750: ../bin/mpicc -qversion >&5
> icc: command line warning #10006: ignoring unknown option '-qversion'
> /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/crt1.o: In function `_start':
> /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main'
> configure:2761: $? = 1
> configure:2781: checking whether the C compiler works
> configure:2803: ../bin/mpicc  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
> configure:2807: $? = 0
> configure:2855: result: yes
> configure:2858: checking for C compiler default output file name
> configure:2860: result: a.out
> configure:2866: checking for suffix of executables
> configure:2873: ../bin/mpicc -o conftest  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
> configure:2877: $? = 0
> configure:2899: result:
> configure:2921: checking whether we are cross compiling
> configure:2929: ../bin/mpicc -o conftest  -I ../include -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.7rc2-intel/lib conftest.c  >&5
> configure:2933: $? = 0
> configure:2940: ./conftest
> /sw/src/mvapich2/mvapich2-1.7rc2/osu_benchmarks/configure: line 2942: 31101 Segmentation fault      ./conftest$ac_cv_exeext
> configure:2944: $? = 139
> configure:2951: error: in `/sw/src/mvapich2/mvapich2-1.7rc2/osu_benchmarks':
> configure:2953: error: cannot run C compiled programs.
>
> Regards,
>
> ----- Original Message -----
> From: "Albino A. Aveleda" <bino at coc.ufrj.br>
> To: mvapich-discuss at cse.ohio-state.edu
> Sent: Friday, October 14, 2011 9:30:18 AM
> Subject: [mvapich-discuss] rpl_malloc error
>
> Hi All,
>
> I compiled the mvapich2-1.6 with gcc witout problem, but
> when I try to compile with intel compiler version 12 I
> receive this error.
>
> make[2]: Entering directory `/sw/src/mvapich2/mvapich2-1.6/osu_benchmarks'
> ../bin/mpicc  -g -O2  -L ../lib -Wl,-rpath=/sw/mpi/mvapich2/1.6-intel/lib -o osu_alltoall osu_alltoall.o
> osu_alltoall.o: In function `main':
> /sw/src/mvapich2/mvapich2-1.6/osu_benchmarks/osu_alltoall.c:69: undefined reference to `rpl_malloc'
> /sw/src/mvapich2/mvapich2-1.6/osu_benchmarks/osu_alltoall.c:78: undefined reference to `rpl_malloc'
> make[2]: *** [osu_alltoall] Error 1
> make[2]: Leaving directory `/sw/src/mvapich2/mvapich2-1.6/osu_benchmarks'
> make[1]: *** [all-postamble] Error 2
> make[1]: Leaving directory `/sw/src/mvapich2/mvapich2-1.6'
> make: *** [all-redirect] Error 2
>
>
> How do I fix this?
>
> Regards,
> Bibo
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