[mvapich-discuss] Make Issue w/ Mvapich2-1.6 RC2 - Error
label'fn_fail' used but not defined
Jonathan Perkins
perkinjo at cse.ohio-state.edu
Fri Feb 11 13:52:00 EST 2011
Hi, thanks for trying mvapich2-1.6rc2 I'm sorry to see that you're
having an issue building this. I've taken a look at your configure
step and I'm a bit confused by a few of the settings. I see that
you're setting CXX=cpp and then. I believe that this is the c
preprocessor and not a c++ compiler as CXX is used for. I also
noticed that you're using pgi compilers for the fortran compilers but
gnu for c. I'm not sure if this can be leading to any issues as well.
If you're using pgi I suggest using pgcc as the c compiler and pgCC
as the c++ compiler.
Also, if your infiniband libraries are located in the system path
(/usr) you do not need to specify the --with-ib options. It looks
like you're specifying /usr/local for the includes but /usr for the
library, I'm not sure which location this is installed in. Can you
try the following command and see if you still have the same problem?
Make sure you use `make clean' before try the build again.
env CC=/opt/pgi/linux86-64/10.5/bin/pgcc
CXX=/opt/pgi/linux86-64/10.5/bin/pgCC CFLAGS="-DSPAWN_DEBUG
-DMPISPAWN_DEBUG" F90="/opt/pgi/linux86-64/10.5/bin/pgf90"
FC="/opt/pgi/linux86-64/10.5/bin/pgf77" ./configure
--prefix=/share/apps/mvapich216 --enable-g=dbg --enable-fast=none
--disable-cxx
On Fri, Feb 11, 2011 at 12:42 PM, <bright.yang at vaisala.com> wrote:
> I tried the same configure settings with Mvapich2 2-1.4, so it might be a
> new issue introduced in version newer than 2-1.4.
>
>
>
> Bright Yang.
>
> ________________________________
>
> From: mvapich-discuss-bounces at cse.ohio-state.edu
> [mailto:mvapich-discuss-bounces at cse.ohio-state.edu] On Behalf Of
> bright.yang at vaisala.com
> Sent: Friday, February 11, 2011 10:02 AM
> To: mvapich-discuss at cse.ohio-state.edu
> Subject: [mvapich-discuss] Make Issue w/ Mvapich2-1.6 RC2 - Error
> label'fn_fail' used but not defined
>
>
>
> Hi,
>
>
>
> I received an error message after configure and while make, here is the
> error message –
>
> CC dup_fn.c
>
> AR cr ../../../lib/libmpich.a attr_delete.o attr_get.o attr_put.o
> comm_create_keyval.o comm_delete_attr.o comm_free_keyval.o comm_get_attr.o
> comm_set_attr.o keyval_create.o keyval_free.o type_create_keyval.o
> type_delete_attr.o type_free_keyval.o type_get_attr.o type_set_attr.o
> win_create_keyval.o win_delete_attr.o win_free_keyval.o win_get_attr.o
> win_set_attr.o attrutil.o dup_fn.o
>
> RANLIB libmpich.a
>
> date > .libstamp0
>
> make[3]: Leaving directory `/root/download/mvapich2-1.6rc2/src/mpi/attr'
>
> make[3]: Entering directory `/root/download/mvapich2-1.6rc2/src/mpi/coll'
>
> CC allreduce.c
>
> CC barrier.c
>
> CC op_create.c
>
> CC op_free.c
>
> CC bcast.c
>
> CC alltoall.c
>
> CC alltoallv.c
>
> CC reduce.c
>
> CC scatter.c
>
> CC gather.c
>
> CC scatterv.c
>
> CC gatherv.c
>
> CC scan.c
>
> CC exscan.c
>
> CC allgather.c
>
> CC allgatherv.c
>
> CC red_scat.c
>
> CC alltoallw.c
>
> CC reduce_local.c
>
> CC op_commutative.c
>
> CC red_scat_block.c
>
> CC allgather_osu.c
>
> CC allgatherv_osu.c
>
> CC allreduce_osu.c
>
> allreduce_osu.c: In function 'MPIR_Allreduce_OSU':
>
> allreduce_osu.c:132: error: label 'fn_fail' used but not defined
>
> allreduce_osu.c: At top level:
>
> allreduce_osu.c:279: error: expected identifier or '(' before 'else'
>
> allreduce_osu.c:627: error: expected identifier or '(' before 'if'
>
> allreduce_osu.c:631: error: expected '=', ',', ';', 'asm' or '__attribute__'
> before ':' token
>
> allreduce_osu.c:632: error: expected identifier or '(' before 'while'
>
> allreduce_osu.c:633: error: expected identifier or '(' before '{' token
>
> allreduce_osu.c:634: error: expected identifier or '(' before 'return'
>
> allreduce_osu.c:636: error: expected '=', ',', ';', 'asm' or '__attribute__'
> before ':' token
>
> allreduce_osu.c:638: error: expected identifier or '(' before '}' token
>
> make[3]: *** [allreduce_osu.o] Error 1
>
> make[3]: Leaving directory `/root/download/mvapich2-1.6rc2/src/mpi/coll'
>
> make[2]: *** [all-redirect] Error 2
>
> make[2]: Leaving directory `/root/download/mvapich2-1.6rc2/src/mpi'
>
> make[1]: *** [all-redirect] Error 2
>
> make[1]: Leaving directory `/root/download/mvapich2-1.6rc2/src'
>
> make: *** [all-redirect] Error 2
>
>
>
> I did configure successfully, see my flags & configure log below. Thanks! –
>
> env CC=gcc CXX=cpp CFLAGS="-DSPAWN_DEBUG -DMPISPAWN_DEBUG"
> F90="/opt/pgi/linux86-64/10.5/bin/pgf90"
> FC="/opt/pgi/linux86-64/10.5/bin/pgf77"
> FLIBS="/opt/pgi/linux86-64/10.5/lib/pgfmain.o" ./configure
> --with-ib-include=/usr/local/include --with-ib-libpath=/usr/lib64
> --prefix=/share/apps/mvapich216 --enable-g=dbg --enable-fast=none
> --disable-cxx
>
>
>
> Configuring MVAPICH2 with '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--prefix=/share/apps/mvapich216'
> '--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
> 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking whether to enable header caching... yes
>
> Executing mpich2prereq in /root/download/mvapich2-1.6rc2/src/mpid/ch3 with
>
> Executing mpich2prereq in
> /root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/nemesis
>
> sourcing /root/download/mvapich2-1.6rc2/src/pm/mpd/mpich2prereq
>
> sourcing /root/download/mvapich2-1.6rc2/src/pm/hydra/mpich2prereq
>
> sourcing /root/download/mvapich2-1.6rc2/src/pm/gforker/mpich2prereq
>
> sourcing /root/download/mvapich2-1.6rc2/src/pm/mpd/setup_pm
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> configure: checking for any hwloc installation...
>
> checking for hwloc_topology_set_pid in -lhwloc... no
>
> checking whether the compiler defines __func__... yes
>
> checking whether the compiler defines __FUNC__... no
>
> checking whether the compiler sets __FUNCTION__... yes
>
> checking for type of weak symbol alias support... pragma weak
>
> checking whether __attribute__ ((weak)) allowed... yes
>
> checking whether __attribute ((weak_import)) allowed... yes
>
> checking for multiple weak symbol support... yes
>
> checking whether we are using the GNU Fortran 77 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes
>
> checking how to get verbose linking output from
> /opt/pgi/linux86-64/10.5/bin/pgf77... -v
>
> checking for Fortran 77 libraries of /opt/pgi/linux86-64/10.5/bin/pgf77...
> -L/opt/pgi/linux86-64/10.5/lib -L/usr/lib64
> -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lpgftnrtl -lnspgc -lpgc -lrt
> -lpthread -lm
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts the FLIBS found
> by autoconf... yes
>
> checking whether C can link with -L/opt/pgi/linux86-64/10.5/lib
> -L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lpgftnrtl -lnspgc
> -lpgc -lrt -lpthread -lm... yes
>
> checking for linker for Fortran main programs... Use Fortran to link
> programs
>
> checking whether Fortran 77 and C objects are compatible... yes
>
> checking for Fortran 77 name mangling... lower underscore
>
> checking what libraries are needed to link Fortran programs with C routines
> that use stdio... none
>
> checking whether Fortran init will work with C... no
>
> checking that f works as the extension for Fortran 90 program... yes
>
> checking whether we are using the GNU Fortran 90 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... yes
>
> checking for extension for Fortran 90 programs... f90
>
> checking whether the Fortran 90 compiler
> (/opt/pgi/linux86-64/10.5/bin/pgf90 -g ) works... yes
>
> checking whether the Fortran 90 compiler
> (/opt/pgi/linux86-64/10.5/bin/pgf90 -g ) is a cross-compiler... no
>
> checking whether Fortran 90 works with Fortran 77... yes
>
> checking whether Fortran accepts ! for comments... yes
>
> checking for include directory flag for Fortran... -I
>
> checking for Fortran 77 flag for library directories... -L
>
> checking for which Fortran libraries are needed to link C with Fortran...
> -L/opt/pgi/linux86-64/10.5/lib -L/usr/lib64
> -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lnspgc
>
> checking whether Fortran compiler processes .F files with C preprocessor...
> yes
>
> checking that f works as the extension for Fortran 90 program... yes
>
> checking whether we are using the GNU Fortran 90 compiler... (cached) no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... (cached)
> yes
>
> checking for extension for Fortran 90 programs... f90
>
> checking whether the Fortran 90 compiler
> (/opt/pgi/linux86-64/10.5/bin/pgf90 -g ) works... yes
>
> checking whether the Fortran 90 compiler
> (/opt/pgi/linux86-64/10.5/bin/pgf90 -g ) is a cross-compiler... no
>
> checking for Fortran 90 module extension... mod
>
> checking for Fortran 90 module include flag... -I
>
> checking whether Fortran 90 accepts f90 suffix... yes
>
> checking whether Fortran 90 compiler processes .F90 files with C
> preprocessor... yes
>
> checking what libraries are needed to link Fortran90 programs with C
> routines that use stdio... none
>
> checking for f90 compiler vendor... pgi
>
> checking for perl... /usr/bin/perl
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking for killall... killall
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether install works... yes
>
> checking whether install breaks libraries... no
>
> checking whether mkdir -p works... yes
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for bash... /bin/bash
>
> checking whether /bin/bash supports arrays... yes
>
> checking for doctext... false
>
> checking for location of doctext style files... unavailable
>
> checking for an ANSI C-conforming const... yes
>
> checking for working volatile... yes
>
> checking for C/C++ restrict keyword... __restrict
>
> checking for inline... inline
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> checking whether byte ordering is bigendian... no
>
> checking whether C compiler allows unaligned doubles... yes
>
> checking whether gcc supports __func__... yes
>
> Using gcc to determine dependencies
>
> checking whether long double is supported... yes
>
> checking whether long long is supported... yes
>
> checking for max C struct integer alignment... eight
>
> checking for max C struct floating point alignment... sixteen
>
> checking for max C struct alignment of structs with doubles... eight
>
> checking for max C struct floating point alignment with long doubles...
> sixteen
>
> configure: WARNING: Structures containing long doubles may be aligned
> differently from structures with floats or longs. MVAPICH2 does not handle
> this case automatically and you should avoid assumed extents for structures
> containing float types.
>
> checking if alignment of structs with doubles is based on position... no
>
> checking if alignment of structs with long long ints is based on position...
> no
>
> checking if double alignment breaks rules, find actual alignment... no
>
> checking for alignment restrictions on pointers... int or better
>
> checking size of char... 1
>
> checking size of unsigned char... 1
>
> checking size of short... 2
>
> checking size of unsigned short... 2
>
> checking size of int... 4
>
> checking size of unsigned int... 4
>
> checking size of long... 8
>
> checking size of unsigned long... 8
>
> checking size of long long... 8
>
> checking size of unsigned long long... 8
>
> checking size of float... 4
>
> checking size of double... 8
>
> checking size of long double... 16
>
> checking size of void *... 8
>
> checking for ANSI C header files... (cached) yes
>
> checking stddef.h usability... yes
>
> checking stddef.h presence... yes
>
> checking for stddef.h... yes
>
> checking size of wchar_t... 4
>
> checking size of float_int... 8
>
> checking size of double_int... 16
>
> checking size of long_int... 16
>
> checking size of short_int... 8
>
> checking size of two_int... 8
>
> checking size of long_double_int... 32
>
> checking sys/bitypes.h usability... yes
>
> checking sys/bitypes.h presence... yes
>
> checking for sys/bitypes.h... yes
>
> checking for inttypes.h... (cached) yes
>
> checking for stdint.h... (cached) yes
>
> checking for int8_t... yes
>
> checking for int16_t... yes
>
> checking for int32_t... yes
>
> checking for int64_t... yes
>
> checking for uint8_t... yes
>
> checking for uint16_t... yes
>
> checking for uint32_t... yes
>
> checking for uint64_t... yes
>
> checking size of _Bool... 1
>
> checking size of float _Complex... 8
>
> checking size of double _Complex... 16
>
> checking size of long double _Complex... 32
>
> checking for _Bool... yes
>
> checking for float _Complex... yes
>
> checking for double _Complex... yes
>
> checking for long double _Complex... yes
>
> checking for size of Fortran type integer... 4
>
> checking for size of Fortran type real... 4
>
> checking for size of Fortran type double precision... 8
>
> checking whether integer*1 is supported... yes
>
> checking whether integer*2 is supported... yes
>
> checking whether integer*4 is supported... yes
>
> checking whether integer*8 is supported... yes
>
> checking whether integer*16 is supported... yes
>
> checking whether real*4 is supported... yes
>
> checking whether real*8 is supported... yes
>
> checking whether real*16 is supported... yes
>
> checking for C type matching Fortran integer... int
>
> checking for size of MPI_Status... 20
>
> checking for values of Fortran logicals... True is -1 and False is 0
>
> checking for Fortran 90 integer kind for 8-byte integers... 8
>
> checking whether real*8 is supported in Fortran 90... yes
>
> checking if char * pointers use byte addresses... yes
>
> checking for alignment restrictions on ... no
>
> checking for alignment restrictions on int32_t... no
>
> checking size of MPIR_Bsend_data_t... 88
>
> checking for gcc __asm__ and pentium cmpxchgl instruction... no
>
> checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes
>
> checking for gcc __asm__ and IA64 xchg4 instruction... no
>
> checking for ANSI C header files... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking stdarg.h usability... yes
>
> checking stdarg.h presence... yes
>
> checking for stdarg.h... yes
>
> checking for sys/types.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking for inttypes.h... (cached) yes
>
> checking limits.h usability... yes
>
> checking limits.h presence... yes
>
> checking for limits.h... yes
>
> checking for stddef.h... (cached) yes
>
> checking errno.h usability... yes
>
> checking errno.h presence... yes
>
> checking for errno.h... yes
>
> checking sys/socket.h usability... yes
>
> checking sys/socket.h presence... yes
>
> checking for sys/socket.h... yes
>
> checking sys/time.h usability... yes
>
> checking sys/time.h presence... yes
>
> checking for sys/time.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking endian.h usability... yes
>
> checking endian.h presence... yes
>
> checking for endian.h... yes
>
> checking assert.h usability... yes
>
> checking assert.h presence... yes
>
> checking for assert.h... yes
>
> checking sys/param.h usability... yes
>
> checking sys/param.h presence... yes
>
> checking for sys/param.h... yes
>
> checking for sys/uio.h... yes
>
> checking for size_t... yes
>
> checking for setitimer... yes
>
> checking for alarm... yes
>
> checking for vsnprintf... yes
>
> checking for vsprintf... yes
>
> checking whether vsnprintf needs a declaration... no
>
> checking for strerror... yes
>
> checking for strncasecmp... yes
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> checking for va_copy... yes
>
> checking for variable argument list macro functionality... yes
>
> checking valgrind.h usability... no
>
> checking valgrind.h presence... no
>
> checking for valgrind.h... no
>
> checking memcheck.h usability... no
>
> checking memcheck.h presence... no
>
> checking for memcheck.h... no
>
> checking valgrind/valgrind.h usability... no
>
> checking valgrind/valgrind.h presence... no
>
> checking for valgrind/valgrind.h... no
>
> checking valgrind/memcheck.h usability... no
>
> checking valgrind/memcheck.h presence... no
>
> checking for valgrind/memcheck.h... no
>
> checking for working alloca.h... yes
>
> checking for alloca... yes
>
> checking for strdup... yes
>
> checking whether strdup needs a declaration... no
>
> checking for mkstemp... yes
>
> checking whether mkstemp needs a declaration... no
>
> checking for fdopen... yes
>
> checking whether fdopen needs a declaration... yes
>
> checking for putenv... yes
>
> checking whether putenv needs a declaration... no
>
> checking for clock_gettime... no
>
> checking for clock_getres... no
>
> checking for gethrtime... no
>
> checking for gettimeofday... yes
>
> sourcing /root/download/mvapich2-1.6rc2/src/mpid/ch3/setup_device
>
> RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
>
> sourcing
> /root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/setup_channel
>
> RUNNING SETUP_CHANNEL FOR THE MRAIL CHANNEL
>
> checking pthread.h usability... yes
>
> checking pthread.h presence... yes
>
> checking for pthread.h... yes
>
> checking for fgrep... /bin/grep -F
>
> checking for pthread_key_create in -lpthread... yes
>
> checking for pthread_yield... yes
>
> checking for pthread_key_create... yes
>
> checking for pthread_cleanup_push... no
>
> checking whether pthread_cleanup_push is available (may be a macro in
> pthread.h)... no
>
> checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
>
> checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... no
>
> checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes
>
> checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... no
>
> checking for sched_yield... yes
>
> checking for yield... no
>
> checking for usleep... yes
>
> checking for sleep... yes
>
> checking for select... yes
>
> checking for getpid... yes
>
> checking for sched_setaffinity... yes
>
> checking for sched_getaffinity... yes
>
> checking for bindprocessor... no
>
> checking for thread_policy_set... no
>
> checking whether cpu_set_t available... yes
>
> checking whether the CPU_SET and CPU_ZERO macros are defined... no
>
> configure: configuring subsystem in src/openpa
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether build environment is sane... yes
>
> checking for a thread-safe mkdir -p... mkdir -p
>
> checking for gawk... gawk
>
> checking whether make sets $(MAKE)... yes
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for style of include used by make... GNU
>
> checking dependency style of gcc... gcc3
>
> checking for ranlib... ranlib
>
> checking whether to enable assertions... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking pthread.h usability... yes
>
> checking pthread.h presence... yes
>
> checking for pthread.h... yes
>
> checking atomic.h usability... no
>
> checking atomic.h presence... no
>
> checking for atomic.h... no
>
> checking intrin.h usability... no
>
> checking intrin.h presence... no
>
> checking for intrin.h... no
>
> checking for inttypes.h... (cached) yes
>
> checking for stdint.h... (cached) yes
>
> checking for C/C++ restrict keyword... __restrict
>
> checking for inline... inline
>
> checking for an ANSI C-conforming const... yes
>
> checking for pthread_create in -lpthread... yes
>
> checking for pthread_yield... yes
>
> checking if 100 threads can be run at once... yes
>
> checking size of void *... 8
>
> checking size of int... 4
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> checking if compiler rejects bogus asm statements... yes
>
> checking for support for gcc x86/x86_64 bit primitives... yes
>
> checking for support for gcc x86 bit primitives for pre-Pentium 4... yes
>
> checking for support for gcc ia64 primitives... no
>
> checking for support for gcc PowerPC atomics... no
>
> checking for support for gcc SiCortex atomics... no
>
> checking for support for gcc atomic intrinsics... yes
>
> checking for support for Windows NT atomic intrinsics... no
>
> checking for support for Sun atomic operations library... no
>
> checking whether to enable strict fairness checks... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating test/Makefile
>
> config.status: creating openpa.pc
>
> config.status: creating src/config.h
>
> config.status: executing src/opa_config.h commands
>
> config.status: creating src/opa_config.h - prefix OPA for src/config.h
> defines
>
> config.status: executing depfiles commands
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx
>
> configure: configuring subsystem in src/mpid/ch3
>
> RUNNING CONFIGURE FOR CH3 DEVICE
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> 16
>
> checking assert.h usability... yes
>
> checking assert.h presence... yes
>
> checking for assert.h... yes
>
> checking limits.h usability... yes
>
> checking limits.h presence... yes
>
> checking for limits.h... yes
>
> checking for string.h... (cached) yes
>
> checking for sys/types.h... (cached) yes
>
> checking sys/uio.h usability... yes
>
> checking sys/uio.h presence... yes
>
> checking for sys/uio.h... yes
>
> checking uuid/uuid.h usability... yes
>
> checking uuid/uuid.h presence... yes
>
> checking for uuid/uuid.h... yes
>
> checking time.h usability... yes
>
> checking time.h presence... yes
>
> checking for time.h... yes
>
> checking ctype.h usability... yes
>
> checking ctype.h presence... yes
>
> checking for ctype.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking arpa/inet.h usability... yes
>
> checking arpa/inet.h presence... yes
>
> checking for arpa/inet.h... yes
>
> checking sys/socket.h usability... yes
>
> checking sys/socket.h presence... yes
>
> checking for sys/socket.h... yes
>
> checking for net/if.h... yes
>
> checking for pid_t... yes
>
> checking for inet_pton... yes
>
> checking for gethostname... yes
>
> checking whether gethostname needs a declaration... no
>
> checking for CFUUIDCreate... no
>
> checking for uuid_generate... no
>
> checking for time... yes
>
> checking whether CPP accepts variable length argument lists... yes
>
> checking whether byte ordering is bigendian... no
>
> checking whether we can use struct ifconf... yes
>
> checking size of int... 4
>
> checking size of long... 8
>
> checking size of long long... 8
>
> checking size of void *... 8
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating util/Makefile
>
> config.status: creating util/shm/Makefile
>
> config.status: creating util/shmbase/Makefile
>
> config.status: creating channels/Makefile
>
> config.status: creating util/ftb/Makefile
>
> config.status: creating localdefs
>
> config.status: creating include/mpid_thread.h
>
> config.status: creating include/mpidi_ch3_conf.h
>
> config.status: executing default-1 commands
>
> copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
>
> === configuring in channels/mrail
> (/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation' 'LIBS= -lpthread'
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src' --cache-file=/dev/null
> --srcdir=.
>
> RUNNING CONFIGURE FOR THE MRAIL CHANNEL
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking errno.h usability... yes
>
> checking errno.h presence... yes
>
> checking for errno.h... yes
>
> checking for stdlib.h... (cached) yes
>
> checking for unistd.h... (cached) yes
>
> checking pthread.h usability... yes
>
> checking pthread.h presence... yes
>
> checking for pthread.h... yes
>
> configure: checking for any hwloc installation...
>
> checking for hwloc_topology_set_pid in -lhwloc... no
>
> configure: No suitable hwloc installed, using internal version
>
> checking for the InfiniBand includes path... /usr/local/include
>
> checking for the InfiniBand library path... /usr/lib64
>
> checking for library containing dlopen... -ldl
>
> checking for library containing umad_init... -libumad
>
> checking for library containing ibv_open_device... -libverbs
>
> checking infiniband/umad.h usability... yes
>
> checking infiniband/umad.h presence... yes
>
> checking for infiniband/umad.h... yes
>
> checking infiniband/verbs.h usability... yes
>
> checking infiniband/verbs.h presence... yes
>
> checking for infiniband/verbs.h... yes
>
> checking whether to enable support for BLCR... no
>
> checking whether to enable support for FTB-CR... no
>
> checking whether to enable support for XRC... no
>
> configure: checking for RDMA CM support...
>
> checking for library containing rdma_create_event_channel... -lrdmacm
>
> checking rdma/rdma_cma.h usability... yes
>
> checking rdma/rdma_cma.h presence... yes
>
> checking for rdma/rdma_cma.h... yes
>
> configure: RDMA CM support enabled
>
> checking whether to enable header caching... yes
>
> checking whether to enable registration caching... yes
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating src/rdma/Makefile
>
> config.status: creating src/gen2/Makefile
>
> config.status: creating localdefs
>
> config.status: creating include/mpidi_ch3i_rdma_conf.h
>
> config.status: executing default-1 commands
>
> Updating dependency directories .deps
>
> === configuring in src/hwloc
> (/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/src/hwloc)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation' 'LIBS= -lpthread'
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src' --cache-file=/dev/null
> --srcdir=.
>
>
>
> ###
>
> ### Configuring hwloc distribution tarball
>
> ### Startup tests
>
> ###
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking target system type... x86_64-unknown-linux-gnu
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether build environment is sane... yes
>
> checking for a thread-safe mkdir -p... mkdir -p
>
> checking for gawk... gawk
>
> checking whether make sets $(MAKE)... yes
>
> checking how to create a ustar tar archive... gnutar
>
> checking for hwloc version... 1.0.1rc3-1
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for style of include used by make... GNU
>
> checking dependency style of gcc... gcc3
>
> checking whether gcc and cc understand -c and -o together... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for pkg-config... /usr/bin/pkg-config
>
> checking pkg-config is at least version 0.9.0... yes
>
>
>
> ###
>
> ### Configuring hwloc core
>
> ###
>
> checking hwloc building mode... standalone
>
> configure: hwloc builddir:
> /root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/src/hwloc
>
> configure: hwloc srcdir:
> /root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/src/hwloc
>
> checking if want hwloc maintainer support... checking for hwloc directory
> prefix... (none)
>
> checking for hwloc symbol prefix... hwloc_
>
> checking for gcc option to accept ISO C99... -std=gnu99
>
> checking minix/config.h usability... no
>
> checking minix/config.h presence... no
>
> checking for minix/config.h... no
>
> checking whether it is safe to define __EXTENSIONS__... yes
>
> checking size of void *... 8
>
> checking which OS support to include... Linux
>
> checking which CPU support to include... x86_64
>
> checking whether diff accepts -u... -u
>
> checking size of unsigned long... 8
>
> checking size of unsigned int... 4
>
> checking for __attribute__... yes
>
> checking for __attribute__(aligned)... yes
>
> checking for __attribute__(always_inline)... yes
>
> checking for __attribute__(cold)... no
>
> checking for __attribute__(const)... yes
>
> checking for __attribute__(deprecated)... yes
>
> checking for __attribute__(format)... no
>
> checking for __attribute__(hot)... no
>
> checking for __attribute__(malloc)... yes
>
> checking for __attribute__(may_alias)... yes
>
> checking for __attribute__(no_instrument_function)... yes
>
> checking for __attribute__(nonnull)... no
>
> checking for __attribute__(noreturn)... yes
>
> checking for __attribute__(packed)... yes
>
> checking for __attribute__(pure)... yes
>
> checking for __attribute__(sentinel)... no
>
> checking for __attribute__(unused)... yes
>
> checking for __attribute__(warn_unused_result)... yes
>
> checking for __attribute__(weak_alias)... yes
>
> checking if gcc supports -fvisibility... yes
>
> checking enable symbol visibility... yes
>
> configure: WARNING: " -fvisibility=hidden" has been added to hwloc's CFLAGS
>
> checking for inline compatibility keyword... __inline__
>
> checking for strncasecmp... yes
>
> checking whether function strncasecmp is declared... yes
>
> checking for stdint.h... (cached) yes
>
> checking for wchar_t... yes
>
> checking for putwc... yes
>
> checking locale.h usability... yes
>
> checking locale.h presence... yes
>
> checking for locale.h... yes
>
> checking for setlocale... yes
>
> checking langinfo.h usability... yes
>
> checking langinfo.h presence... yes
>
> checking for langinfo.h... yes
>
> checking for nl_langinfo... yes
>
> checking curses.h usability... yes
>
> checking curses.h presence... yes
>
> checking for curses.h... yes
>
> checking for term.h... yes
>
> checking for library containing tparm... -lncursesw
>
> checking for KAFFINITY... no
>
> checking for PROCESSOR_CACHE_TYPE... no
>
> checking for CACHE_DESCRIPTOR... no
>
> checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
>
> checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
>
> checking for GROUP_AFFINITY... no
>
> checking for PROCESSOR_RELATIONSHIP... no
>
> checking for NUMA_NODE_RELATIONSHIP... no
>
> checking for CACHE_RELATIONSHIP... no
>
> checking for PROCESSOR_GROUP_INFO... no
>
> checking for GROUP_RELATIONSHIP... no
>
> checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
>
> checking for main in -lgdi32... no
>
> checking windows.h usability... no
>
> checking windows.h presence... no
>
> checking for windows.h... no
>
> checking sys/lgrp_user.h usability... no
>
> checking sys/lgrp_user.h presence... no
>
> checking for sys/lgrp_user.h... no
>
> checking kstat.h usability... no
>
> checking kstat.h presence... no
>
> checking for kstat.h... no
>
> checking infiniband/verbs.h usability... yes
>
> checking infiniband/verbs.h presence... yes
>
> checking for infiniband/verbs.h... yes
>
> checking for main in -libverbs... yes
>
> checking whether _SC_NPROCESSORS_ONLN is declared... yes
>
> checking whether _SC_NPROCESSORS_CONF is declared... yes
>
> checking whether _SC_NPROC_ONLN is declared... no
>
> checking whether _SC_NPROC_CONF is declared... no
>
> checking whether _SC_LARGE_PAGESIZE is declared... no
>
> checking mach/mach_host.h usability... no
>
> checking mach/mach_host.h presence... no
>
> checking for mach/mach_host.h... no
>
> checking mach/mach_init.h usability... no
>
> checking mach/mach_init.h presence... no
>
> checking for mach/mach_init.h... no
>
> checking sys/param.h usability... yes
>
> checking sys/param.h presence... yes
>
> checking for sys/param.h... yes
>
> checking for sys/sysctl.h... yes
>
> checking whether CTL_HW is declared... no
>
> checking whether HW_NCPU is declared... no
>
> checking for sysctl... yes
>
> checking for sysctlbyname... no
>
> checking for pthread_t... yes
>
> checking whether function sched_setaffinity is declared... yes
>
> checking for old prototype of sched_setaffinity... no
>
> checking for working CPU_SET... yes
>
> checking for working CPU_SET_S... no
>
> checking for KERRIGHED... no
>
> checking for lib... no
>
> checking for bash... /bin/sh
>
> checking for ffs... yes
>
> checking whether function ffs is declared... yes
>
> checking for ffsl... yes
>
> checking whether function ffsl is declared... yes
>
> checking for fls... no
>
> checking for flsl... no
>
> checking for clz... no
>
> checking for clzl... no
>
> checking for openat... yes
>
> checking whether numa_bitmask_alloc is declared... no
>
> checking pthread_np.h usability... no
>
> checking pthread_np.h presence... no
>
> checking for pthread_np.h... no
>
> checking whether pthread_setaffinity_np is declared... yes
>
> checking whether pthread_getaffinity_np is declared... yes
>
> checking for sched_setaffinity... yes
>
> checking for sys/cpuset.h... no
>
> checking for cpuid... yes
>
> checking for X... libraries , headers
>
>
>
> ###
>
> ### Configuring hwloc documentation
>
> ###
>
> checking if this is a developer build... no (doxygen generation is optional)
>
> checking for doxygen... no
>
> checking for pdflatex... /usr/bin/pdflatex
>
> checking for makeindex... /usr/bin/makeindex
>
> checking for fig2dev... no
>
> checking if can build doxygen docs... no
>
> checking for w3m... no
>
> checking for lynx... no
>
> checking if can build top-level README... no
>
> checking if will build doxygen docs... no
>
> checking if will install doxygen docs... no
>
> checking whether to enable "picky" compiler mode... no (default)
>
>
>
> ###
>
> ### Configuring hwloc command line utilities
>
> ###
>
> checking for CAIRO... yes
>
> checking for cairo_fill... yes
>
> checking for final CAIRO support... yes
>
> checking for gethostbyname... yes
>
> checking for connect... yes
>
> checking for remove... yes
>
> checking for shmat... yes
>
> checking for IceConnectionNumber in -lICE... yes
>
> checking for X11/Xlib.h... yes
>
> checking X11/Xutil.h usability... yes
>
> checking X11/Xutil.h presence... yes
>
> checking for X11/Xutil.h... yes
>
> checking for XOpenDisplay in -lX11... yes
>
> checking X11/keysym.h usability... yes
>
> checking X11/keysym.h presence... yes
>
> checking for X11/keysym.h... yes
>
> checking for XOpenDisplay in -lX11... (cached) yes
>
>
>
> ###
>
> ### Configuring hwloc tests
>
> ###
>
> checking for a sed that does not truncate output... /bin/sed
>
> checking for fgrep... /bin/grep -F
>
> checking for ld used by gcc... /usr/bin/ld
>
> checking if the linker (/usr/bin/ld) is GNU ld... yes
>
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
>
> checking whether ln -s works... yes
>
> checking the maximum length of command line arguments... 98304
>
> checking whether the shell understands some XSI constructs... yes
>
> checking whether the shell understands "+="... yes
>
> checking for /usr/bin/ld option to reload object files... -r
>
> checking for objdump... objdump
>
> checking how to recognize dependent libraries... pass_all
>
> checking for ar... ar
>
> checking for strip... strip
>
> checking for ranlib... ranlib
>
> checking command to parse /usr/bin/nm -B output from gcc object... ok
>
> checking for dlfcn.h... yes
>
> checking for objdir... .libs
>
> checking if gcc supports -fno-rtti -fno-exceptions... no
>
> checking for gcc option to produce PIC... -fPIC -DPIC
>
> checking if gcc PIC flag -fPIC -DPIC works... yes
>
> checking if gcc static flag -static works... yes
>
> checking if gcc supports -c -o file.o... yes
>
> checking if gcc supports -c -o file.o... (cached) yes
>
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
>
> checking whether -lc should be explicitly linked in... no
>
> checking dynamic linker characteristics... GNU/Linux ld.so
>
> checking how to hardcode library paths into programs... immediate
>
> checking whether stripping libraries is possible... yes
>
> checking if libtool supports shared libraries... yes
>
> checking whether to build shared libraries... yes
>
> checking whether to build static libraries... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating include/Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating doc/Makefile
>
> config.status: creating doc/doxygen-config.cfg
>
> config.status: creating utils/Makefile
>
> config.status: creating hwloc.pc
>
> config.status: creating tests/Makefile
>
> config.status: creating tests/linux/Makefile
>
> config.status: creating tests/xml/Makefile
>
> config.status: creating tests/ports/Makefile
>
> config.status: creating tests/linux/gather-topology.sh
>
> config.status: creating tests/linux/test-topology.sh
>
> config.status: creating tests/xml/test-topology.sh
>
> config.status: creating utils/test-hwloc-distrib.sh
>
> config.status: creating include/private/config.h
>
> config.status: creating include/hwloc/config.h
>
> config.status: linking src/topology.c to tests/ports/topology.c
>
> config.status: linking src/traversal.c to tests/ports/traversal.c
>
> config.status: linking src/topology-synthetic.c to
> tests/ports/topology-synthetic.c
>
> config.status: linking src/topology-solaris.c to
> tests/ports/topology-solaris.c
>
> config.status: linking src/topology-aix.c to tests/ports/topology-aix.c
>
> config.status: linking src/topology-osf.c to tests/ports/topology-osf.c
>
> config.status: linking src/topology-windows.c to
> tests/ports/topology-windows.c
>
> config.status: linking src/topology-darwin.c to
> tests/ports/topology-darwin.c
>
> config.status: linking src/topology-freebsd.c to
> tests/ports/topology-freebsd.c
>
> config.status: linking src/topology-hpux.c to tests/ports/topology-hpux.c
>
> config.status: executing depfiles commands
>
> config.status: executing chmoding-scripts commands
>
> config.status: executing libtool commands
>
> configure: configuring subsystem in src/mpid/common/locks
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> RUNNING CONFIGURE FOR LOCKS
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for yield... no
>
> checking for sched_yield... yes
>
> checking for usleep... yes
>
> checking for sleep... yes
>
> checking for select... yes
>
> checking for mutex_init... no
>
> checking for compare_and_swap... no
>
> checking for pthread_mutexattr_init... yes
>
> checking for pthread_mutexattr_setpshared... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking pthread.h usability... yes
>
> checking pthread.h presence... yes
>
> checking for pthread.h... yes
>
> checking sched.h usability... yes
>
> checking sched.h presence... yes
>
> checking for sched.h... yes
>
> checking for inline... inline
>
> checking for working volatile... yes
>
> checking for an ANSI C-conforming const... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating mpid_locksconf.h
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> configure: configuring subsystem in src/mpi/romio
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> Configuring with args --prefix=/share/apps/mvapich216
> --with-ib-include=/usr/local/include --with-ib-libpath=/usr/lib64
> --enable-g=dbg --enable-fast=none --disable-cxx CC=gcc CFLAGS=-DSPAWN_DEBUG
> -DMPISPAWN_DEBUG F90=/opt/pgi/linux86-64/10.5/bin/pgf90 CXX=cpp
> --with-atomic-primitives=auto_allow_emulation
>
> checking for architecture... LINUX
>
> ROMIO home directory is /root/download/mvapich2-1.6rc2/src/mpi/romio
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking whether we are using the GNU Fortran 77 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for memalign... yes
>
> checking Fortran external names
>
> Fortran externals have a trailing underscore and are lowercase
>
> checking for inline... inline
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking fcntl.h usability... yes
>
> checking fcntl.h presence... yes
>
> checking for fcntl.h... yes
>
> checking malloc.h usability... yes
>
> checking malloc.h presence... yes
>
> checking for malloc.h... yes
>
> checking stddef.h usability... yes
>
> checking stddef.h presence... yes
>
> checking for stddef.h... yes
>
> checking for sys/types.h... (cached) yes
>
> checking for u_char... yes
>
> checking for u_short... yes
>
> checking for u_int... yes
>
> checking for u_long... yes
>
> checking sys/attr.h usability... no
>
> checking sys/attr.h presence... no
>
> checking for sys/attr.h... no
>
> checking size of int... 4
>
> checking size of void *... 8
>
> checking for int large enough for pointers... no
>
> checking size of long long... 8
>
> checking for extension for Fortran 90 programs... f90
>
> checking for Fortran 90 KIND parameter for 8-byte integers... 8
>
> checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes
>
> Overriding Array test for MPICH2
>
> checking for weak symbol support... pragma weak
>
> checking that weak symbols are visible to other files... yes
>
> checking that the compiler correctly implements weak symbols... yes
>
> checking whether struct flock compatible with MPI_Offset... yes
>
> checking for pvfs2-config... notfound
>
> checking configured file systems... testfs ufs nfs
>
> configure: WARNING: File locks may not work with NFS. See the Installation
> and
>
> users manual for instructions on testing and if necessary fixing this
>
> checking for library containing aio_write... -lrt
>
> checking signal.h usability... yes
>
> checking signal.h presence... yes
>
> checking for signal.h... yes
>
> checking if aio.h exists and can be compiled... yes
>
> checking if sys/aio.h exists and can be compiled... no
>
> checking whether aio routines can be used... yes
>
> checking for obsolete two-argument aio_write... no
>
> checking for obsolete two-argument aio_suspend... no
>
> checking for aio_fildes member of aiocb structure... yes
>
> checking for aio_whence member of aiocb structure... no
>
> checking for aio_handle member of aiocb structure... no
>
> checking for aio_reqprio member of aiocb structure... yes
>
> checking for aio_sigevent member of aiocb structure... yes
>
> checking sys/vfs.h usability... yes
>
> checking sys/vfs.h presence... yes
>
> checking for sys/vfs.h... yes
>
> checking sys/param.h usability... yes
>
> checking sys/param.h presence... yes
>
> checking for sys/param.h... yes
>
> checking sys/mount.h usability... yes
>
> checking sys/mount.h presence... yes
>
> checking for sys/mount.h... yes
>
> checking sys/statvfs.h usability... yes
>
> checking sys/statvfs.h presence... yes
>
> checking for sys/statvfs.h... yes
>
> checking whether struct statfs properly defined... yes
>
> checking for f_fstypename member of statfs structure... no
>
> checking for sys/stat.h... (cached) yes
>
> checking for sys/types.h... (cached) yes
>
> checking for unistd.h... (cached) yes
>
> checking for stat... yes
>
> checking for st_fstype member of stat structure... no
>
> checking for sys/types.h... (cached) yes
>
> checking for sys/statvfs.h... (cached) yes
>
> checking for sys/vfs.h... (cached) yes
>
> checking for statvfs... yes
>
> checking for f_basetype member of statvfs structure... no
>
> checking for unistd.h... (cached) yes
>
> checking for large file defines... yes
>
> checking whether off64_t is an scalar type... yes
>
> checking for strerror... yes
>
> checking for doctext... false
>
> checking for strdup... yes
>
> checking whether strdup needs a declaration... no
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> checking for lstat... yes
>
> checking whether lstat needs a declaration... yes
>
> checking for readlink... yes
>
> checking whether readlink needs a declaration... no
>
> checking for fsync... yes
>
> checking whether fsync needs a declaration... no
>
> checking for ftruncate... yes
>
> checking whether ftruncate needs a declaration... no
>
> checking for lseek64... yes
>
> checking whether lseek64 needs a declaration... no
>
> checking for unistd.h... (cached) yes
>
> checking for large file defines... yes
>
> setting SYSDEP_INC to
>
> checking for C/C++ restrict keyword... __restrict
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> setting CC to gcc
>
> setting F77 to /opt/pgi/linux86-64/10.5/bin/pgf77
>
> setting TEST_CC to /root/download/mvapich2-1.6rc2/bin/mpicc
>
> setting TEST_F77 to /root/download/mvapich2-1.6rc2/bin/mpif77
>
> setting CFLAGS to -DSPAWN_DEBUG -DMPISPAWN_DEBUG -g -DFORTRANUNDERSCORE
> -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H
> -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
>
> setting USER_CFLAGS to
>
> setting USER_FFLAGS to
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating localdefs
>
> config.status: creating mpi-io/Makefile
>
> config.status: creating mpi2-other/info/Makefile
>
> config.status: creating mpi2-other/array/Makefile
>
> config.status: creating adio/common/Makefile
>
> config.status: creating test/Makefile
>
> config.status: creating test/misc.c
>
> config.status: creating test/large_file.c
>
> config.status: creating test/runtests
>
> config.status: creating test-internal/Makefile
>
> config.status: creating util/romioinstall
>
> config.status: creating include/mpio.h
>
> config.status: creating include/mpiof.h
>
> config.status: creating adio/ad_nfs/Makefile
>
> config.status: creating adio/ad_ufs/Makefile
>
> config.status: creating adio/ad_bgl/Makefile
>
> config.status: creating adio/ad_bglockless/Makefile
>
> config.status: creating adio/ad_panfs/Makefile
>
> config.status: creating adio/ad_xfs/Makefile
>
> config.status: creating adio/ad_sfs/Makefile
>
> config.status: creating adio/ad_pfs/Makefile
>
> config.status: creating adio/ad_testfs/Makefile
>
> config.status: creating adio/ad_pvfs/Makefile
>
> config.status: creating adio/ad_pvfs2/Makefile
>
> config.status: creating adio/ad_gridftp/Makefile
>
> config.status: creating adio/ad_lustre/Makefile
>
> config.status: creating adio/ad_zoidfs/Makefile
>
> config.status: creating mpi-io/fortran/Makefile
>
> config.status: creating mpi2-other/info/fortran/Makefile
>
> config.status: creating mpi2-other/array/fortran/Makefile
>
> config.status: creating test/fmisc.f
>
> config.status: creating test/fcoll_test.f
>
> config.status: creating test/pfcoll_test.f
>
> config.status: creating test/fperf.f
>
> config.status: creating mpi-io/glue/mpich2/Makefile
>
> config.status: creating mpi-io/glue/mpich1/Makefile
>
> config.status: creating mpi-io/glue/default/Makefile
>
> config.status: creating common/dataloop/Makefile
>
> config.status: creating adio/include/romioconf.h
>
> config.status: executing default-1 commands
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> configure: configuring subsystem in src/pmi/simple
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> RUNNING CONFIGURE FOR THE SIMPLE PMI
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking sys/socket.h usability... yes
>
> checking sys/socket.h presence... yes
>
> checking for sys/socket.h... yes
>
> checking for strings.h... (cached) yes
>
> checking assert.h usability... yes
>
> checking assert.h presence... yes
>
> checking for assert.h... yes
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> checking for strncasecmp... yes
>
> checking for sys/types.h... (cached) yes
>
> checking sys/param.h usability... yes
>
> checking sys/param.h presence... yes
>
> checking for sys/param.h... yes
>
> checking for sys/socket.h... (cached) yes
>
> checking netinet/in.h usability... yes
>
> checking netinet/in.h presence... yes
>
> checking for netinet/in.h... yes
>
> checking netinet/tcp.h usability... yes
>
> checking netinet/tcp.h presence... yes
>
> checking for netinet/tcp.h... yes
>
> checking sys/un.h usability... yes
>
> checking sys/un.h presence... yes
>
> checking for sys/un.h... yes
>
> checking netdb.h usability... yes
>
> checking netdb.h presence... yes
>
> checking for netdb.h... yes
>
> checking for library containing socket... none required
>
> checking for library containing gethostbyname... none required
>
> checking for socket... yes
>
> checking for setsockopt... yes
>
> checking for gethostbyname... yes
>
> checking whether socklen_t is defined (in sys/socket.h if present)... yes
>
> checking whether struct hostent contains h_addr_list... yes
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating localdefs
>
> config.status: creating pmiconf.h
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> configure: configuring subsystem in src/pm/mpd
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> Configuring with args --prefix=/share/apps/mvapich216
> --with-ib-include=/usr/local/include --with-ib-libpath=/usr/lib64
> --enable-g=dbg --enable-fast=none --disable-cxx CC=gcc CFLAGS=-DSPAWN_DEBUG
> -DMPISPAWN_DEBUG F90=/opt/pgi/linux86-64/10.5/bin/pgf90 CXX=cpp
> --with-atomic-primitives=auto_allow_emulation
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking whether make sets $(MAKE)... yes
>
> checking whether ln -s works... yes
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether install /usr/bin/install -c works... yes
>
> Using INSTALL=/usr/bin/install -c
>
> checking for totalview... no
>
> checking for python2.6... no
>
> checking for python2.5... no
>
> checking for python2.4... python2.4
>
> checking for python2.3... no
>
> checking for python2.2... no
>
> checking for python2... python2
>
> checking for python... python
>
> checking that python2.4 is a valid python version... yes
>
> checking that the cPickle module is available for python2.4... yes
>
> checking for library containing socket... none required
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/wait.h that is POSIX.1 compatible... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking fcntl.h usability... yes
>
> checking fcntl.h presence... yes
>
> checking for fcntl.h... yes
>
> checking for strings.h... (cached) yes
>
> checking sys/time.h usability... yes
>
> checking sys/time.h presence... yes
>
> checking for sys/time.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking sys/param.h usability... yes
>
> checking sys/param.h presence... yes
>
> checking for sys/param.h... yes
>
> checking for putenv... yes
>
> checking for socket... yes
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating mpdconf.h
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> configure: configuring subsystem in src/pm/hydra
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-fast, --disable-cxx, --with-atomic-primitives
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether build environment is sane... yes
>
> checking for a thread-safe mkdir -p... mkdir -p
>
> checking for gawk... gawk
>
> checking whether make sets $(MAKE)... yes
>
> checking for style of include used by make... GNU
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking dependency style of gcc... gcc3
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking size of unsigned long... 8
>
> checking for gcc... (cached) gcc
>
> checking whether we are using the GNU C compiler... (cached) yes
>
> checking whether gcc accepts -g... (cached) yes
>
> checking for gcc option to accept ISO C89... (cached) none needed
>
> checking dependency style of gcc... (cached) gcc3
>
> checking for size_t... yes
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for a sed that does not truncate output... /bin/sed
>
> checking for fgrep... /bin/grep -F
>
> checking for ld used by gcc... /usr/bin/ld
>
> checking if the linker (/usr/bin/ld) is GNU ld... yes
>
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
>
> checking whether ln -s works... yes
>
> checking the maximum length of command line arguments... 98304
>
> checking whether the shell understands some XSI constructs... yes
>
> checking whether the shell understands "+="... yes
>
> checking for /usr/bin/ld option to reload object files... -r
>
> checking for objdump... objdump
>
> checking how to recognize dependent libraries... pass_all
>
> checking for ar... ar
>
> checking for strip... strip
>
> checking for ranlib... ranlib
>
> checking command to parse /usr/bin/nm -B output from gcc object... ok
>
> checking for dlfcn.h... yes
>
> checking for objdir... .libs
>
> checking if gcc supports -fno-rtti -fno-exceptions... no
>
> checking for gcc option to produce PIC... -fPIC -DPIC
>
> checking if gcc PIC flag -fPIC -DPIC works... yes
>
> checking if gcc static flag -static works... yes
>
> checking if gcc supports -c -o file.o... yes
>
> checking if gcc supports -c -o file.o... (cached) yes
>
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
>
> checking whether -lc should be explicitly linked in... no
>
> checking dynamic linker characteristics... GNU/Linux ld.so
>
> checking how to hardcode library paths into programs... immediate
>
> checking whether stripping libraries is possible... yes
>
> checking if libtool supports shared libraries... yes
>
> checking whether to build shared libraries... yes
>
> checking whether to build static libraries... yes
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking for variable argument list macro functionality... yes
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> checking whether the compiler defines __func__... yes
>
> checking whether the compiler defines __FUNC__... no
>
> checking whether the compiler sets __FUNCTION__... yes
>
> configure: ===== configuring mpl =====
>
> configure: executing:
> /root/download/mvapich2-1.6rc2/src/pm/hydra/mpl/configure
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' CFLAGS='-DSPAWN_DEBUG -DMPISPAWN_DEBUG '
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation' LDFLAGS='' LIBS=''
> CPPFLAGS='-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether build environment is sane... yes
>
> checking for a thread-safe mkdir -p... mkdir -p
>
> checking for gawk... gawk
>
> checking whether make sets $(MAKE)... yes
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for style of include used by make... GNU
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking dependency style of gcc... gcc3
>
> checking for a sed that does not truncate output... /bin/sed
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for fgrep... /bin/grep -F
>
> checking for ld used by gcc... /usr/bin/ld
>
> checking if the linker (/usr/bin/ld) is GNU ld... yes
>
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
>
> checking whether ln -s works... yes
>
> checking the maximum length of command line arguments... 98304
>
> checking whether the shell understands some XSI constructs... yes
>
> checking whether the shell understands "+="... yes
>
> checking for /usr/bin/ld option to reload object files... -r
>
> checking for objdump... objdump
>
> checking how to recognize dependent libraries... pass_all
>
> checking for ar... ar
>
> checking for strip... strip
>
> checking for ranlib... ranlib
>
> checking command to parse /usr/bin/nm -B output from gcc object... ok
>
> checking how to run the C preprocessor... gcc -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for dlfcn.h... yes
>
> checking for objdir... .libs
>
> checking if gcc supports -fno-rtti -fno-exceptions... no
>
> checking for gcc option to produce PIC... -fPIC -DPIC
>
> checking if gcc PIC flag -fPIC -DPIC works... yes
>
> checking if gcc static flag -static works... yes
>
> checking if gcc supports -c -o file.o... yes
>
> checking if gcc supports -c -o file.o... (cached) yes
>
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
>
> checking dynamic linker characteristics... GNU/Linux ld.so
>
> checking how to hardcode library paths into programs... immediate
>
> checking whether stripping libraries is possible... yes
>
> checking if libtool supports shared libraries... yes
>
> checking whether to build shared libraries... no
>
> checking whether to build static libraries... yes
>
> checking for gcc... (cached) gcc
>
> checking whether we are using the GNU C compiler... (cached) yes
>
> checking whether gcc accepts -g... (cached) yes
>
> checking for gcc option to accept ISO C89... (cached) none needed
>
> checking dependency style of gcc... (cached) gcc3
>
> checking for an ANSI C-conforming const... yes
>
> checking for C/C++ restrict keyword... __restrict
>
> checking for variable argument list macro functionality... yes
>
> checking stdio.h usability... yes
>
> checking stdio.h presence... yes
>
> checking for stdio.h... yes
>
> checking for stdlib.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking stdarg.h usability... yes
>
> checking stdarg.h presence... yes
>
> checking for stdarg.h... yes
>
> checking ctype.h usability... yes
>
> checking ctype.h presence... yes
>
> checking for ctype.h... yes
>
> checking for inttypes.h... (cached) yes
>
> checking for stdint.h... (cached) yes
>
> checking valgrind.h usability... no
>
> checking valgrind.h presence... no
>
> checking for valgrind.h... no
>
> checking memcheck.h usability... no
>
> checking memcheck.h presence... no
>
> checking for memcheck.h... no
>
> checking valgrind/valgrind.h usability... no
>
> checking valgrind/valgrind.h presence... no
>
> checking for valgrind/valgrind.h... no
>
> checking valgrind/memcheck.h usability... no
>
> checking valgrind/memcheck.h presence... no
>
> checking for valgrind/memcheck.h... no
>
> checking helgrind.h usability... no
>
> checking helgrind.h presence... no
>
> checking for helgrind.h... no
>
> checking valgrind/helgrind.h usability... no
>
> checking valgrind/helgrind.h presence... no
>
> checking for valgrind/helgrind.h... no
>
> checking drd.h usability... no
>
> checking drd.h presence... no
>
> checking for drd.h... no
>
> checking valgrind/drd.h usability... no
>
> checking valgrind/drd.h presence... no
>
> checking for valgrind/drd.h... no
>
> checking whether the valgrind headers are broken or too old... yes
>
> checking for strdup... yes
>
> checking whether strdup needs a declaration... no
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> checking for strncmp... yes
>
> checking whether strncmp needs a declaration... no
>
> checking for putenv... yes
>
> checking whether putenv needs a declaration... no
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating localdefs
>
> config.status: creating include/config.h
>
> config.status: executing depfiles commands
>
> config.status: executing libtool commands
>
> config.status: executing include/mplconfig.h commands
>
> config.status: creating include/mplconfig.h - prefix MPL for
> include/config.h defines
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> configure: ===== done with mpl configure =====
>
> checking for doxygen... no
>
> checking for unistd.h... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking for strings.h... (cached) yes
>
> checking stdarg.h usability... yes
>
> checking stdarg.h presence... yes
>
> checking for stdarg.h... yes
>
> checking for sys/types.h... (cached) yes
>
> checking sys/socket.h usability... yes
>
> checking sys/socket.h presence... yes
>
> checking for sys/socket.h... yes
>
> checking sched.h usability... yes
>
> checking sched.h presence... yes
>
> checking for sched.h... yes
>
> checking for sys/stat.h... (cached) yes
>
> checking sys/param.h usability... yes
>
> checking sys/param.h presence... yes
>
> checking for sys/param.h... yes
>
> checking netinet/in.h usability... yes
>
> checking netinet/in.h presence... yes
>
> checking for netinet/in.h... yes
>
> checking netinet/tcp.h usability... yes
>
> checking netinet/tcp.h presence... yes
>
> checking for netinet/tcp.h... yes
>
> checking sys/un.h usability... yes
>
> checking sys/un.h presence... yes
>
> checking for sys/un.h... yes
>
> checking netdb.h usability... yes
>
> checking netdb.h presence... yes
>
> checking for netdb.h... yes
>
> checking sys/time.h usability... yes
>
> checking sys/time.h presence... yes
>
> checking for sys/time.h... yes
>
> checking time.h usability... yes
>
> checking time.h presence... yes
>
> checking for time.h... yes
>
> checking ifaddrs.h usability... yes
>
> checking ifaddrs.h presence... yes
>
> checking for ifaddrs.h... yes
>
> checking arpa/inet.h usability... yes
>
> checking arpa/inet.h presence... yes
>
> checking for arpa/inet.h... yes
>
> checking errno.h usability... yes
>
> checking errno.h presence... yes
>
> checking for errno.h... yes
>
> checking poll.h usability... yes
>
> checking poll.h presence... yes
>
> checking for poll.h... yes
>
> checking fcntl.h usability... yes
>
> checking fcntl.h presence... yes
>
> checking for fcntl.h... yes
>
> checking for netdb.h... (cached) yes
>
> checking winsock2.h usability... no
>
> checking winsock2.h presence... no
>
> checking for winsock2.h... no
>
> checking windows.h usability... no
>
> checking windows.h presence... no
>
> checking for windows.h... no
>
> checking for socket in -lsocket... no
>
> checking for gethostbyname in -lnsl... yes
>
> checking for gettimeofday... yes
>
> checking for time... yes
>
> checking for strdup... yes
>
> checking for sigaction... yes
>
> checking for signal... yes
>
> checking for usleep... yes
>
> checking for alloca... no
>
> checking for unsetenv... yes
>
> checking for strerror... yes
>
> checking for strsignal... yes
>
> checking for stat... yes
>
> checking for getifaddrs... yes
>
> checking for fcntl... yes
>
> checking for alarm... yes
>
> checking for environ in unistd.h... no
>
> checking for manually declared extern environ... yes
>
> checking boot-strap server... ssh,rsh,fork,slurm,ll,lsf,sge,persist
>
> checking resource management kernel... none,pbs
>
> checking process manager... pmiserv
>
> checking user interface... mpich
>
> checking process binding library... hwloc,plpa
>
> configure: ===== configuring tools/bind/hwloc/hwloc =====
>
> configure: executing:
> /root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/hwloc/hwloc/configure
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' CFLAGS='-DSPAWN_DEBUG -DMPISPAWN_DEBUG '
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation' LDFLAGS=' -lnsl' LIBS=''
> CPPFLAGS='-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
>
>
> ###
>
> ### Configuring hwloc distribution tarball
>
> ### Startup tests
>
> ###
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking target system type... x86_64-unknown-linux-gnu
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether build environment is sane... yes
>
> checking for a thread-safe mkdir -p... mkdir -p
>
> checking for gawk... gawk
>
> checking whether make sets $(MAKE)... yes
>
> checking how to create a ustar tar archive... gnutar
>
> checking for hwloc version... 1.0.2rc3-1
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for style of include used by make... GNU
>
> checking dependency style of gcc... gcc3
>
> checking whether gcc and cc understand -c and -o together... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for pkg-config... /usr/bin/pkg-config
>
> checking pkg-config is at least version 0.9.0... yes
>
>
>
> ###
>
> ### Configuring hwloc core
>
> ###
>
> checking hwloc building mode... standalone
>
> configure: hwloc builddir:
> /root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/hwloc/hwloc
>
> configure: hwloc srcdir:
> /root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/hwloc/hwloc
>
> checking if want hwloc maintainer support... disabled
>
> checking for hwloc directory prefix... (none)
>
> checking for hwloc symbol prefix... hwloc_
>
> checking for gcc option to accept ISO C99... -std=gnu99
>
> checking minix/config.h usability... no
>
> checking minix/config.h presence... no
>
> checking for minix/config.h... no
>
> checking whether it is safe to define __EXTENSIONS__... yes
>
> checking size of void *... 8
>
> checking which OS support to include... Linux
>
> checking which CPU support to include... x86_64
>
> checking whether diff accepts -u... -u
>
> checking size of unsigned long... 8
>
> checking size of unsigned int... 4
>
> checking for __attribute__... yes
>
> checking for __attribute__(aligned)... yes
>
> checking for __attribute__(always_inline)... yes
>
> checking for __attribute__(cold)... no
>
> checking for __attribute__(const)... yes
>
> checking for __attribute__(deprecated)... yes
>
> checking for __attribute__(format)... no
>
> checking for __attribute__(hot)... no
>
> checking for __attribute__(malloc)... yes
>
> checking for __attribute__(may_alias)... yes
>
> checking for __attribute__(no_instrument_function)... yes
>
> checking for __attribute__(nonnull)... no
>
> checking for __attribute__(noreturn)... yes
>
> checking for __attribute__(packed)... yes
>
> checking for __attribute__(pure)... yes
>
> checking for __attribute__(sentinel)... no
>
> checking for __attribute__(unused)... yes
>
> checking for __attribute__(warn_unused_result)... yes
>
> checking for __attribute__(weak_alias)... yes
>
> checking if gcc supports -fvisibility... yes
>
> checking enable symbol visibility... yes
>
> configure: WARNING: " -fvisibility=hidden" has been added to hwloc's CFLAGS
>
> checking for inline compatibility keyword... __inline__
>
> checking for strncasecmp... yes
>
> checking whether function strncasecmp is declared... yes
>
> checking for stdint.h... (cached) yes
>
> checking for wchar_t... yes
>
> checking for putwc... yes
>
> checking locale.h usability... yes
>
> checking locale.h presence... yes
>
> checking for locale.h... yes
>
> checking for setlocale... yes
>
> checking langinfo.h usability... yes
>
> checking langinfo.h presence... yes
>
> checking for langinfo.h... yes
>
> checking for nl_langinfo... yes
>
> checking curses.h usability... yes
>
> checking curses.h presence... yes
>
> checking for curses.h... yes
>
> checking for term.h... yes
>
> checking for library containing tparm... -lncursesw
>
> checking for KAFFINITY... no
>
> checking for PROCESSOR_CACHE_TYPE... no
>
> checking for CACHE_DESCRIPTOR... no
>
> checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
>
> checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
>
> checking for GROUP_AFFINITY... no
>
> checking for PROCESSOR_RELATIONSHIP... no
>
> checking for NUMA_NODE_RELATIONSHIP... no
>
> checking for CACHE_RELATIONSHIP... no
>
> checking for PROCESSOR_GROUP_INFO... no
>
> checking for GROUP_RELATIONSHIP... no
>
> checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
>
> checking for main in -lgdi32... no
>
> checking windows.h usability... no
>
> checking windows.h presence... no
>
> checking for windows.h... no
>
> checking sys/lgrp_user.h usability... no
>
> checking sys/lgrp_user.h presence... no
>
> checking for sys/lgrp_user.h... no
>
> checking kstat.h usability... no
>
> checking kstat.h presence... no
>
> checking for kstat.h... no
>
> checking infiniband/verbs.h usability... yes
>
> checking infiniband/verbs.h presence... yes
>
> checking for infiniband/verbs.h... yes
>
> checking for ibv_open_device in -libverbs... yes
>
> checking whether _SC_NPROCESSORS_ONLN is declared... yes
>
> checking whether _SC_NPROCESSORS_CONF is declared... yes
>
> checking whether _SC_NPROC_ONLN is declared... no
>
> checking whether _SC_NPROC_CONF is declared... no
>
> checking whether _SC_LARGE_PAGESIZE is declared... no
>
> checking mach/mach_host.h usability... no
>
> checking mach/mach_host.h presence... no
>
> checking for mach/mach_host.h... no
>
> checking mach/mach_init.h usability... no
>
> checking mach/mach_init.h presence... no
>
> checking for mach/mach_init.h... no
>
> checking sys/param.h usability... yes
>
> checking sys/param.h presence... yes
>
> checking for sys/param.h... yes
>
> checking for sys/sysctl.h... yes
>
> checking whether CTL_HW is declared... no
>
> checking whether HW_NCPU is declared... no
>
> checking for sysctl... yes
>
> checking for sysctlbyname... no
>
> checking for pthread_t... yes
>
> checking whether function sched_setaffinity is declared... yes
>
> checking for old prototype of sched_setaffinity... no
>
> checking for working CPU_SET... yes
>
> checking for working CPU_SET_S... no
>
> checking for KERRIGHED... no
>
> checking for lib... no
>
> checking for bash... /bin/sh
>
> checking for ffs... yes
>
> checking whether function ffs is declared... yes
>
> checking for ffsl... yes
>
> checking whether function ffsl is declared... yes
>
> checking for fls... no
>
> checking for flsl... no
>
> checking for clz... no
>
> checking for clzl... no
>
> checking for openat... yes
>
> checking whether numa_bitmask_alloc is declared... no
>
> checking pthread_np.h usability... no
>
> checking pthread_np.h presence... no
>
> checking for pthread_np.h... no
>
> checking whether pthread_setaffinity_np is declared... yes
>
> checking whether pthread_getaffinity_np is declared... yes
>
> checking for sched_setaffinity... yes
>
> checking for sys/cpuset.h... no
>
> checking for library containing pthread_getthrds_np... no
>
> checking for cpuid... yes
>
> checking for X... libraries , headers
>
>
>
> ###
>
> ### Configuring hwloc documentation
>
> ###
>
> checking if this is a developer build... no (doxygen generation is optional)
>
> checking for doxygen... no
>
> checking for pdflatex... /usr/bin/pdflatex
>
> checking for makeindex... /usr/bin/makeindex
>
> checking for fig2dev... no
>
> checking if can build doxygen docs... no
>
> checking for w3m... no
>
> checking for lynx... no
>
> checking if can build top-level README... no
>
> checking if will build doxygen docs... no
>
> checking if will install doxygen docs... no
>
> checking whether to enable "picky" compiler mode... no (default)
>
>
>
> ###
>
> ### Configuring hwloc command line utilities
>
> ###
>
> checking for CAIRO... yes
>
> checking for cairo_fill... yes
>
> checking for final CAIRO support... yes
>
> checking for gethostbyname... yes
>
> checking for connect... yes
>
> checking for remove... yes
>
> checking for shmat... yes
>
> checking for IceConnectionNumber in -lICE... yes
>
> checking for X11/Xlib.h... yes
>
> checking X11/Xutil.h usability... yes
>
> checking X11/Xutil.h presence... yes
>
> checking for X11/Xutil.h... yes
>
> checking for XOpenDisplay in -lX11... yes
>
> checking X11/keysym.h usability... yes
>
> checking X11/keysym.h presence... yes
>
> checking for X11/keysym.h... yes
>
> checking for XOpenDisplay in -lX11... (cached) yes
>
> checking for XML... yes
>
> checking for xmlNewDoc... yes
>
> checking for final XML support... yes
>
> checking for xmllint... xmllint
>
>
>
> ###
>
> ### Configuring hwloc tests
>
> ###
>
> checking for a sed that does not truncate output... /bin/sed
>
> checking for fgrep... /bin/grep -F
>
> checking for ld used by gcc... /usr/bin/ld
>
> checking if the linker (/usr/bin/ld) is GNU ld... yes
>
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
>
> checking whether ln -s works... yes
>
> checking the maximum length of command line arguments... 98304
>
> checking whether the shell understands some XSI constructs... yes
>
> checking whether the shell understands "+="... yes
>
> checking for /usr/bin/ld option to reload object files... -r
>
> checking for objdump... objdump
>
> checking how to recognize dependent libraries... pass_all
>
> checking for ar... ar
>
> checking for strip... strip
>
> checking for ranlib... ranlib
>
> checking command to parse /usr/bin/nm -B output from gcc object... ok
>
> checking for dlfcn.h... yes
>
> checking for objdir... .libs
>
> checking if gcc supports -fno-rtti -fno-exceptions... no
>
> checking for gcc option to produce PIC... -fPIC -DPIC
>
> checking if gcc PIC flag -fPIC -DPIC works... yes
>
> checking if gcc static flag -static works... no
>
> checking if gcc supports -c -o file.o... yes
>
> checking if gcc supports -c -o file.o... (cached) yes
>
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
>
> checking dynamic linker characteristics... GNU/Linux ld.so
>
> checking how to hardcode library paths into programs... immediate
>
> checking whether stripping libraries is possible... yes
>
> checking if libtool supports shared libraries... yes
>
> checking whether to build shared libraries... no
>
> checking whether to build static libraries... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating include/Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating doc/Makefile
>
> config.status: creating doc/doxygen-config.cfg
>
> config.status: creating utils/Makefile
>
> config.status: creating hwloc.pc
>
> config.status: creating tests/Makefile
>
> config.status: creating tests/linux/Makefile
>
> config.status: creating tests/xml/Makefile
>
> config.status: creating tests/ports/Makefile
>
> config.status: creating tests/linux/gather-topology.sh
>
> config.status: creating tests/linux/test-topology.sh
>
> config.status: creating tests/xml/test-topology.sh
>
> config.status: creating utils/test-hwloc-distrib.sh
>
> config.status: creating include/private/config.h
>
> config.status: creating include/hwloc/config.h
>
> config.status: linking src/topology.c to tests/ports/topology.c
>
> config.status: linking src/traversal.c to tests/ports/traversal.c
>
> config.status: linking src/topology-synthetic.c to
> tests/ports/topology-synthetic.c
>
> config.status: linking src/topology-solaris.c to
> tests/ports/topology-solaris.c
>
> config.status: linking src/topology-aix.c to tests/ports/topology-aix.c
>
> config.status: linking src/topology-osf.c to tests/ports/topology-osf.c
>
> config.status: linking src/topology-windows.c to
> tests/ports/topology-windows.c
>
> config.status: linking src/topology-darwin.c to
> tests/ports/topology-darwin.c
>
> config.status: linking src/topology-freebsd.c to
> tests/ports/topology-freebsd.c
>
> config.status: linking src/topology-hpux.c to tests/ports/topology-hpux.c
>
> config.status: executing depfiles commands
>
> config.status: executing chmoding-scripts commands
>
> config.status: executing libtool commands
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> configure: ===== done with tools/bind/hwloc/hwloc configure =====
>
> configure: ===== configuring tools/bind/plpa/plpa =====
>
> configure: executing:
> /root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/plpa/plpa/configure
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' CFLAGS='-DSPAWN_DEBUG -DMPISPAWN_DEBUG '
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation' LDFLAGS=' -lnsl' LIBS=''
> CPPFLAGS='-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether build environment is sane... yes
>
> checking for a thread-safe mkdir -p... mkdir -p
>
> checking for gawk... gawk
>
> checking whether make sets $(MAKE)... yes
>
> checking for PLPA version... 1.3.2
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for style of include used by make... GNU
>
> checking dependency style of gcc... gcc3
>
> checking whether gcc and cc understand -c and -o together... yes
>
> checking whether to enable "picky" compiler mode... no (default)
>
> checking for flex... flex
>
> checking lex output file root... lex.yy
>
> checking lex library... -lfl
>
> checking whether yytext is a pointer... yes
>
> checking for bison... bison -y
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for syscall... yes
>
> checking sys/syscall.h usability... yes
>
> checking sys/syscall.h presence... yes
>
> checking for sys/syscall.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking for __NR_sched_setaffinity... yes
>
> checking for __NR_sched_getaffinity... yes
>
> checking for PLPA building mode... standalone
>
> checking if want PLPA maintainer support... disabled
>
> checking for PLPA config prefix... .
>
> checking for PLPA symbol prefix... plpa_
>
> checking valgrind/valgrind.h usability... no
>
> checking valgrind/valgrind.h presence... no
>
> checking for valgrind/valgrind.h... no
>
> configure: WARNING: valgrind.h not found
>
> checking whether to build PLPA executables... yes
>
> checking for inline... inline
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for a sed that does not truncate output... /bin/sed
>
> checking for fgrep... /bin/grep -F
>
> checking for ld used by gcc... /usr/bin/ld
>
> checking if the linker (/usr/bin/ld) is GNU ld... yes
>
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
>
> checking whether ln -s works... yes
>
> checking the maximum length of command line arguments... 98304
>
> checking whether the shell understands some XSI constructs... yes
>
> checking whether the shell understands "+="... yes
>
> checking for /usr/bin/ld option to reload object files... -r
>
> checking for objdump... objdump
>
> checking how to recognize dependent libraries... pass_all
>
> checking for ar... ar
>
> checking for strip... strip
>
> checking for ranlib... ranlib
>
> checking command to parse /usr/bin/nm -B output from gcc object... ok
>
> checking for dlfcn.h... yes
>
> checking for objdir... .libs
>
> checking if gcc supports -fno-rtti -fno-exceptions... no
>
> checking for gcc option to produce PIC... -fPIC -DPIC
>
> checking if gcc PIC flag -fPIC -DPIC works... yes
>
> checking if gcc static flag -static works... yes
>
> checking if gcc supports -c -o file.o... yes
>
> checking if gcc supports -c -o file.o... (cached) yes
>
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
>
> checking dynamic linker characteristics... GNU/Linux ld.so
>
> checking how to hardcode library paths into programs... immediate
>
> checking whether stripping libraries is possible... yes
>
> checking if libtool supports shared libraries... yes
>
> checking whether to build shared libraries... no
>
> checking whether to build static libraries... yes
>
> configure: creating ./config.status
>
> config.status: creating ./Makefile
>
> config.status: creating ./config/Makefile
>
> config.status: creating ./src/Makefile
>
> config.status: creating ./src/libplpa/Makefile
>
> config.status: creating ./src/plpa-info/Makefile
>
> config.status: creating ./src/plpa-taskset/Makefile
>
> config.status: creating ./src/libplpa/plpa_config.h
>
> config.status: creating ./src/libplpa/plpa.h
>
> config.status: executing depfiles commands
>
> config.status: executing libtool commands
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
> --with-atomic-primitives
>
> configure: ===== done with tools/bind/plpa/plpa configure =====
>
> checking if plpa works correctly... yes
>
> checking checkpointing library... none
>
> checking demux engine... poll,select,port
>
> checking for poll... yes
>
> checking for select... yes
>
> checking debugging support... dbg
>
> checking error checking... yes
>
> checking warnings... no
>
> checking profiling... yes
>
> checking for strsignal... (cached) yes
>
> checking whether strsignal needs a declaration... yes
>
> checking for sigaction... (cached) yes
>
> checking for signal... (cached) yes
>
> checking for sigset... yes
>
> checking for struct sigaction and sa_handler... yes
>
> checking for gethostname... yes
>
> checking whether gethostname needs a declaration... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating tools/bootstrap/src/bsci_init.c
>
> config.status: creating tools/bootstrap/include/bsci.h
>
> config.status: creating tools/rmk/src/rmki_init.c
>
> config.status: creating tools/rmk/include/rmki.h
>
> config.status: creating hydra-doxygen.cfg
>
> config.status: creating include/hydra_config.h
>
> config.status: executing depfiles commands
>
> config.status: executing libtool commands
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-fast, --disable-cxx, --with-atomic-primitives
>
> configure: configuring subsystem in src/pm/gforker
>
> RUNNING CONFIGURE FOR THE GFORKER PM
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether install works... yes
>
> checking whether mkdir -p works... yes
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for working volatile... yes
>
> checking for C/C++ restrict keyword... __restrict
>
> checking for inline... inline
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> checking for strdup... yes
>
> checking whether strdup needs a declaration... no
>
> checking for setsid... yes
>
> checking for isatty... yes
>
> checking for getsid... yes
>
> checking for library containing socketpair... none required
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for sys/types.h... (cached) yes
>
> checking signal.h usability... yes
>
> checking signal.h presence... yes
>
> checking for signal.h... yes
>
> checking sys/ptrace.h usability... yes
>
> checking sys/ptrace.h presence... yes
>
> checking for sys/ptrace.h... yes
>
> checking for strsignal... yes
>
> checking for sigaction... yes
>
> checking for signal... yes
>
> checking for sigset... yes
>
> checking for struct sigaction... yes
>
> checking for string.h... (cached) yes
>
> checking sys/time.h usability... yes
>
> checking sys/time.h presence... yes
>
> checking for sys/time.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking sys/socket.h usability... yes
>
> checking sys/socket.h presence... yes
>
> checking for sys/socket.h... yes
>
> checking wait.h usability... yes
>
> checking wait.h presence... yes
>
> checking for wait.h... yes
>
> checking errno.h usability... yes
>
> checking errno.h presence... yes
>
> checking for errno.h... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating forkerconf.h
>
> === configuring in ../util
> (/root/download/mvapich2-1.6rc2/src/pm/gforker/../util)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src' --cache-file=/dev/null
> --srcdir=.
>
> RUNNING CONFIGURE FOR THE PM UTILITIES
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking for an ANSI C-conforming const... yes
>
> checking for working volatile... yes
>
> checking for C/C++ restrict keyword... __restrict
>
> checking for inline... inline
>
> checking whether __attribute__ allowed... yes
>
> checking whether __attribute__((format)) allowed... yes
>
> checking for strtol... yes
>
> checking for time... yes
>
> checking for gettimeofday... yes
>
> checking whether struct hostent contains h_addr_list... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for pid_t... yes
>
> checking for setsid... yes
>
> checking for isatty... yes
>
> checking for getsid... yes
>
> checking whether getsid is prototyped in unistd.h... no
>
> checking for unsetenv... yes
>
> checking for cygwin1.dll in /bin... yes
>
> checking for environ in unistd.h... no
>
> checking for extern environ in runtime... yes
>
> checking for library containing socketpair... none required
>
> checking for ANSI C header files... (cached) yes
>
> checking for sys/types.h... (cached) yes
>
> checking signal.h usability... yes
>
> checking signal.h presence... yes
>
> checking for signal.h... yes
>
> checking sys/ptrace.h usability... yes
>
> checking sys/ptrace.h presence... yes
>
> checking for sys/ptrace.h... yes
>
> checking sys/uio.h usability... yes
>
> checking sys/uio.h presence... yes
>
> checking for sys/uio.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking whether struct iovec is defined in sys/uio.h... yes
>
> checking for strsignal... yes
>
> checking whether strsignal needs a declaration... yes
>
> checking for snprintf... yes
>
> checking for strdup... yes
>
> checking for sigaction... yes
>
> checking for signal... yes
>
> checking for sigset... yes
>
> checking for struct sigaction and sa_handler... yes
>
> checking whether snprintf needs a declaration... no
>
> checking whether strdup needs a declaration... no
>
> checking for putenv... yes
>
> checking whether putenv needs a declaration... no
>
> checking for gethostname... yes
>
> checking whether gethostname needs a declaration... no
>
> checking for select... yes
>
> checking sys/select.h usability... yes
>
> checking sys/select.h presence... yes
>
> checking for sys/select.h... yes
>
> checking whether FD_ZERO works... yes
>
> checking for sched_setaffinity... yes
>
> checking for sched_getaffinity... yes
>
> checking for bindprocessor... no
>
> checking for thread_policy_set... no
>
> checking whether cpu_set_t available... yes
>
> checking whether the CPU_SET and CPU_ZERO macros are defined... no
>
> checking for string.h... (cached) yes
>
> checking sys/time.h usability... yes
>
> checking sys/time.h presence... yes
>
> checking for sys/time.h... yes
>
> checking time.h usability... yes
>
> checking time.h presence... yes
>
> checking for time.h... yes
>
> checking for stdlib.h... (cached) yes
>
> checking sys/socket.h usability... yes
>
> checking sys/socket.h presence... yes
>
> checking for sys/socket.h... yes
>
> checking wait.h usability... yes
>
> checking wait.h presence... yes
>
> checking for wait.h... yes
>
> checking errno.h usability... yes
>
> checking errno.h presence... yes
>
> checking for errno.h... yes
>
> checking whether socklen_t is defined (in sys/socket.h if present)... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating test/Makefile
>
> config.status: creating pmutilconf.h
>
> configure: configuring subsystem in src/mpe2
>
> Configuring MPE Profiling System with '--prefix=/share/apps/mvapich216'
> '--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
> '--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
> 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> This MPE build is part of the MPICH2 build
>
> checking for leftover Makefiles in subpackages ... none
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking whether MPI_CC has been set ...
> /root/download/mvapich2-1.6rc2/bin/mpicc
>
> checking whether we are using the GNU Fortran 77 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes
>
> checking whether MPI_F77 has been set ...
> /root/download/mvapich2-1.6rc2/bin/mpif77
>
> checking how to get verbose linking output from
> /opt/pgi/linux86-64/10.5/bin/pgf77... -v
>
> checking for Fortran 77 libraries of /opt/pgi/linux86-64/10.5/bin/pgf77...
> -L/usr/lib64 -L/opt/pgi/linux86-64/10.5/lib
> -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lpthread -lrdmacm -libverbs
> -libumad -ldl -lrt -lpgftnrtl -lnspgc -lpgc -lm
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts the FLIBS found
> by autoconf... yes
>
> checking whether C can link with -L/usr/lib64
> -L/opt/pgi/linux86-64/10.5/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
> -lpthread -lrdmacm -libverbs -libumad -ldl -lrt -lpgftnrtl -lnspgc -lpgc
> -lm... yes
>
> checking for linker for Fortran main programs... Use Fortran to link
> programs
>
> checking whether Fortran 77 and C objects are compatible... yes
>
> checking for Fortran 77 name mangling... lower underscore
>
> checking what libraries are needed to link Fortran programs with C routines
> that use stdio... none
>
> checking for Fortran 77 flag for library directories... -L
>
> checking for include directory flag for Fortran... -I
>
> checking how to run the C preprocessor... gcc -E
>
> checking whether ln -s works... yes
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether install works... yes
>
> checking for ranlib... ranlib
>
> checking whether install breaks libraries... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating sbin/mpetestlink
>
> config.status: creating sbin/mpetestexec
>
> config.status: creating sbin/mpetestexeclog
>
> config.status: creating sbin/mpeinstall
>
> config.status: creating sbin/mpecheckinstall
>
> config.status: WARNING: 'sbin/mpecheckinstall.in' seems to ignore the
> --datarootdir setting
>
> config.status: creating sbin/mpecheckbuild
>
> config.status: creating etc/mpe_help.conf
>
> config.status: creating etc/mpe_f77env.conf
>
> config.status: creating mpe_conf.h
>
> config.status: executing default-1 commands
>
> === configuring in src/misc
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/misc)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> Configuring MPE Miscellaneous Library with '--disable-option-checking'
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/misc
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking whether gcc and cc understand -c and -o together... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for dbx... no
>
> checking for gdb... no
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for sysinfo... yes
>
> checking for uname... yes
>
> checking for gethostbyname... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking netdb.h usability... yes
>
> checking netdb.h presence... yes
>
> checking for netdb.h... yes
>
> checking sys/systeminfo.h usability... no
>
> checking sys/systeminfo.h presence... no
>
> checking for sys/systeminfo.h... no
>
> checking for sys/types.h... (cached) yes
>
> checking for sighandler_t... no
>
> checking for kill... yes
>
> checking whether kill needs a declaration... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating src/dbxerr.c
>
> config.status: creating mpe_misc_conf.h
>
> === configuring in src/callstack
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/callstack)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> Configuring MPE CallStack Library with '--disable-option-checking'
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/callstack
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking whether gcc and cc understand -c and -o together... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for inline... inline
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking stdio.h usability... yes
>
> checking stdio.h presence... yes
>
> checking for stdio.h... yes
>
> checking for string.h... (cached) yes
>
> checking for unistd.h... (cached) yes
>
> checking fcntl.h usability... yes
>
> checking fcntl.h presence... yes
>
> checking for fcntl.h... yes
>
> checking execinfo.h usability... yes
>
> checking execinfo.h presence... yes
>
> checking for execinfo.h... yes
>
> checking whether <execinfo.h> defines backtrace_symbols_fd() ... yes
>
> checking if <execinfo.h> links with -Wl,--export-dynamic ... yes
>
> checking for fdopen... yes
>
> checking whether fdopen needs a declaration... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating include/mpe_callstack.h
>
> config.status: creating etc/mpe_callstack_ldflags.conf
>
> config.status: creating mpe_callstack_conf.h
>
> === configuring in src/logging
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/logging)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> Configuring MPE Logging Library and Tools with '--disable-option-checking'
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/logging
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking whether gcc and cc understand -c and -o together... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking whether byte ordering is bigendian... no
>
> checking stdio.h usability... yes
>
> checking stdio.h presence... yes
>
> checking for stdio.h... yes
>
> checking for stdlib.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking for unistd.h... (cached) yes
>
> checking sys/time.h usability... yes
>
> checking sys/time.h presence... yes
>
> checking for sys/time.h... yes
>
> checking for sys/types.h... (cached) yes
>
> checking sys/bitypes.h usability... yes
>
> checking sys/bitypes.h presence... yes
>
> checking for sys/bitypes.h... yes
>
> checking for sys/stat.h... (cached) yes
>
> checking fcntl.h usability... yes
>
> checking fcntl.h presence... yes
>
> checking for fcntl.h... yes
>
> checking for header that defines C99 integer types, intXX_t ... <stdint.h>
>
> checking for inttypes.h... (cached) yes
>
> checking whether <inttypes.h> defines the PRIdXX macros ... yes
>
> checking if <stdint.h> can be behind system headers ... yes
>
> checking size of void *... 8
>
> checking for address-sized integer ... CLOG_int64_t
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for gethostname... yes
>
> checking whether gethostname needs a declaration... no
>
> checking for snprintf... yes
>
> checking whether snprintf needs a declaration... no
>
> checking for mkstemp... yes
>
> checking whether mkstemp needs a declaration... no
>
> checking for srand48... yes
>
> checking whether srand48 needs a declaration... no
>
> checking for lrand48... yes
>
> checking whether lrand48 needs a declaration... no
>
> checking for special C compiler options needed for large files... no
>
> checking for _FILE_OFFSET_BITS value needed for large files... no
>
> checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE
>
> checking for O_BINARY for open() ... no
>
> checking pthread.h usability... yes
>
> checking pthread.h presence... yes
>
> checking for pthread.h... yes
>
> checking for pthread_mutex_lock in -lpthread... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating include/clog_inttypes.h
>
> config.status: creating include/mpi_null.h
>
> config.status: creating include/mpe_log_thread.h
>
> config.status: creating etc/mpe_log.conf
>
> config.status: creating etc/mpe_nolog.conf
>
> config.status: creating etc/mpe_log_postlib.conf
>
> config.status: creating mpe_logging_conf.h
>
> === configuring in src/wrappers
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/wrappers)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> Configuring MPE Wrapper Libraries For MPI with '--disable-option-checking'
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/wrappers
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking stdio.h usability... yes
>
> checking stdio.h presence... yes
>
> checking for stdio.h... yes
>
> checking for stdlib.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking stdarg.h usability... yes
>
> checking stdarg.h presence... yes
>
> checking for stdarg.h... yes
>
> checking for working alloca.h... yes
>
> checking for alloca... yes
>
> checking for stdarg is correct... yes
>
> checking if compiler accepts prototypes ... yes
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for safe PMPI invocations ... no
>
> checking for the value of MPI_STATUS_SIZE ... 5
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating test/Makefile
>
> config.status: creating etc/mpe_f77env.conf
>
> config.status: creating etc/mpe_mpilog.conf
>
> config.status: creating etc/mpe_mpitrace.conf
>
> config.status: creating mpe_wrappers_conf.h
>
> === configuring in src/graphics
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/graphics)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> Configuring MPE X Graphics Library with '--disable-option-checking'
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/graphics
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking whether gcc and cc understand -c and -o together... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for X... libraries , headers
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking size of void *... 8
>
> checking for long pointer... yes
>
> checking for system... yes
>
> checking for unistd.h... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating contrib/life/Makefile
>
> config.status: creating contrib/mandel/Makefile
>
> config.status: creating contrib/mastermind/Makefile
>
> config.status: creating contrib/test/Makefile
>
> config.status: creating etc/mpe_mpianim.conf
>
> config.status: creating etc/mpe_graphics.conf
>
> config.status: creating mpe_graphics_conf.h
>
> === configuring in src/collchk
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/collchk)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> Configuring MPE Collective and Datatype Checking Library with
> '--disable-option-checking' '--prefix=/share/apps/mvapich216'
> '--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
> '--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
> 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/collchk
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for ar... ar
>
> checking for ranlib... ranlib
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking stdio.h usability... yes
>
> checking stdio.h presence... yes
>
> checking for stdio.h... yes
>
> checking for stdlib.h... (cached) yes
>
> checking for string.h... (cached) yes
>
> checking for unistd.h... (cached) yes
>
> checking for working alloca.h... yes
>
> checking for alloca... yes
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating test/Makefile
>
> config.status: creating etc/mpe_mpicheck.conf
>
> config.status: creating mpe_collchk_conf.h
>
> === configuring in src/slog2sdk
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk
>
> Configuring SLOG2SDK with '--disable-option-checking'
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether install works... yes
>
> checking if CLASSPATH is set... no, good to go
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for java in user's PATH... found /usr/java/latest/bin/java
>
> checking if /usr/java/latest/bin/java runs simple java class... yes
>
> checking if /usr/java/latest/bin/java runs simple jar file... yes
>
> checking if /usr/java/latest/bin/java runs non-GUI tool... yes
>
> checking if /usr/java/latest/bin/java runs simple Swing class... yes
>
> checking if /usr/java/latest/bin/java runs simple Swing jar file... yes
>
> checking for Java version... java full version "1.6.0_16-b01", i.e. Java 2
> SDK
>
> checking for cygpath... no
>
> creating /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/share
>
> creating /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/share/logfiles
>
> creating sample logfiles from source
>
> checking for leftover Makefiles in subpackages ... none
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating sbin/install-package
>
> config.status: creating bin/slog2print
>
> config.status: creating bin/slog2navigator
>
> config.status: creating bin/slog2filter
>
> config.status: creating bin/slog2updater
>
> config.status: creating bin/logconvertor
>
> config.status: creating bin/jumpshot
>
> config.status: creating bin/clogprint
>
> config.status: creating bin/clogTOslog2
>
> config.status: creating bin/clog2print
>
> config.status: creating bin/clog2TOslog2
>
> === configuring in trace_rlog
> (/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> --cache-file=/dev/null --srcdir=.
>
> checking for current directory name...
> /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog
>
> Configuring TRACE_RLOG implementation with '--disable-option-checking'
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
> '--with-atomic-primitives=auto_allow_emulation'
> 'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
> 'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS= -L/usr/lib64 '
> 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl -lrt '
> 'CPPFLAGS=-I/usr/local/include
> -I/root/download/mvapich2-1.6rc2/src/openpa/src
> -I/root/download/mvapich2-1.6rc2/src/openpa/src'
> 'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
> '--cache-file=/dev/null' '--srcdir=.'
>
> checking gnumake... yes using --no-print-directory
>
> checking BSD 4.4 make... no - whew
>
> checking OSF V3 make... no
>
> checking for virtual path format... VPATH
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for stdlib.h... (cached) yes
>
> checking stdio.h usability... yes
>
> checking stdio.h presence... yes
>
> checking for stdio.h... yes
>
> checking for string.h... (cached) yes
>
> checking ctype.h usability... yes
>
> checking ctype.h presence... yes
>
> checking for ctype.h... yes
>
> checking errno.h usability... yes
>
> checking errno.h presence... yes
>
> checking for errno.h... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking size of void *... 8
>
> checking size of int... 4
>
> checking size of long... 8
>
> checking size of long long... 8
>
> checking size of __int64... 0
>
> checking whether byte ordering is bigendian... no
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking host system type... x86_64-unknown-linux-gnu
>
> checking for sed... sed
>
> checking for a sed that does not truncate output... sed
>
> checking for fgrep... /bin/grep -F
>
> checking for ld used by gcc... /usr/bin/ld
>
> checking if the linker (/usr/bin/ld) is GNU ld... yes
>
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
>
> checking whether ln -s works... yes
>
> checking the maximum length of command line arguments... 98304
>
> checking whether the shell understands some XSI constructs... yes
>
> checking whether the shell understands "+="... yes
>
> checking for /usr/bin/ld option to reload object files... -r
>
> checking how to recognize dependent libraries... pass_all
>
> checking for ar... ar
>
> checking for strip... strip
>
> checking for ranlib... ranlib
>
> checking command to parse /usr/bin/nm -B output from gcc object... ok
>
> checking for dlfcn.h... yes
>
> checking for objdir... .libs
>
> checking if gcc supports -fno-rtti -fno-exceptions... no
>
> checking for gcc option to produce PIC... -fPIC -DPIC
>
> checking if gcc PIC flag -fPIC -DPIC works... yes
>
> checking if gcc static flag -static works... no
>
> checking if gcc supports -c -o file.o... yes
>
> checking if gcc supports -c -o file.o... (cached) yes
>
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
>
> checking whether -lc should be explicitly linked in... no
>
> checking dynamic linker characteristics... GNU/Linux ld.so
>
> checking how to hardcode library paths into programs... immediate
>
> checking whether stripping libraries is possible... yes
>
> checking if libtool supports shared libraries... yes
>
> checking whether to build shared libraries... yes
>
> checking whether to build static libraries... no
>
> checking for malloc in -lefence... no
>
> checking for strstr... yes
>
> checking target system type... x86_64-unknown-linux-gnu
>
> checking for javah in user's PATH... found /usr/java/latest/bin/javah
>
> checking if /usr/java/latest exists... yes
>
> checking for <jni.h> include flag... found -I/usr/java/latest/include
> -I/usr/java/latest/include/linux
>
> checking for <jni.h> usability... yes
>
> checking for cygpath... no
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether install works... yes
>
> checking for ranlib... (cached) ranlib
>
> checking whether install breaks libraries... no
>
> creating directory
> /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog/lib
>
> creating
> /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog/share
>
> creating
> /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog/share/logfiles
>
> creating sample logfiles from source
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating sbin/install-package
>
> config.status: creating bin/traceprint
>
> config.status: creating bin/traceTOslog2
>
> config.status: creating trace_impl.h
>
> config.status: executing libtool commands
>
> SLOG2SDK: "trace_rlog" have been configured
>
> MPE2: "src/misc" "src/callstack" "src/logging" "src/wrappers"
> "src/graphics" "src/collchk" "src/slog2sdk" have been configured
>
> checking size of OPA_ptr_t... 8
>
> checking the sizeof MPI_Offset... 8
>
> checking whether the Fortran Offset type works with Fortran77... yes
>
> checking whether the Fortran Offset type works with Fortran90... yes
>
> Running Configure for F90 Type routines
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx
>
> checking for cc... gcc
>
> checking whether the C compiler sets its return status correctly... yes
>
> checking for an ANSI C-conforming const... no
>
> checking that f works as the extension for Fortran 90 program... yes
>
> checking for Fortran 90 compiler default output file name... a.out
>
> checking whether the Fortran 90 compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU Fortran 90 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... yes
>
> checking whether Fortran 90 accepts f90 suffix... yes
>
> checking for precision and range of reals... 6 , 37
>
> checking for precision and range of double precision... 15 , 307
>
> checking for range of integers... 9
>
> checking whether we are using the GNU Fortran 77 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes
>
> checking for linker for Fortran main programs... Use Fortran to link
> programs
>
> checking for Fortran 77 name mangling... lower underscore
>
> checking for available integer kinds and ranges... 2 , 1, 4 , 2, 9 , 4, 18
> , 8,
>
> { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 },
>
> configure: creating ./config.status
>
> config.status: creating mpif90model.h
>
> configure: WARNING: unrecognized options: --with-ib-include,
> --with-ib-libpath, --enable-g, --enable-fast, --disable-cxx
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating src/Makefile
>
> config.status: creating src/include/Makefile
>
> config.status: creating src/include/mpich2info.h
>
> config.status: creating mvapich2-doxygen
>
> config.status: creating src/include/mpichtimer.h
>
> config.status: creating src/binding/Makefile
>
> config.status: creating src/binding/cxx/Makefile
>
> config.status: creating src/binding/cxx/mpicxx.h
>
> config.status: creating src/binding/f77/Makefile
>
> config.status: creating src/binding/f77/mpif.h
>
> config.status: creating src/binding/f77/setbotf.f
>
> config.status: creating src/binding/f90/Makefile
>
> config.status: creating src/binding/f90/mpi_sizeofs.f90
>
> config.status: creating src/packaging/Makefile
>
> config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc
>
> config.status: creating src/packaging/pkgconfig/Makefile
>
> config.status: creating src/packaging/envmods/mpich2.module
>
> config.status: WARNING: 'src/packaging/envmods/mpich2.module.in' seems to
> ignore the --datarootdir setting
>
> config.status: creating src/packaging/envmods/Makefile
>
> config.status: creating src/env/mpixxx_opts.conf
>
> config.status: creating src/env/mpicc
>
> config.status: creating src/env/mpicc.conf
>
> config.status: creating src/env/mpicc.bash
>
> config.status: creating src/env/mpicxx
>
> config.status: creating src/env/mpicxx.conf
>
> config.status: creating src/env/mpicxx.bash
>
> config.status: creating src/env/mpif77
>
> config.status: creating src/env/mpif77.conf
>
> config.status: creating src/env/mpif77.bash
>
> config.status: creating src/env/mpif90
>
> config.status: creating src/env/mpif90.conf
>
> config.status: creating src/env/mpif90.bash
>
> config.status: creating src/env/parkill
>
> config.status: creating src/env/Makefile
>
> config.status: creating src/env/mpiname/Makefile
>
> config.status: creating src/util/createshlib
>
> config.status: creating src/mpi/Makefile
>
> config.status: creating src/mpi/attr/Makefile
>
> config.status: creating src/mpi/coll/Makefile
>
> config.status: creating src/mpi/comm/Makefile
>
> config.status: creating src/mpi/datatype/Makefile
>
> config.status: creating src/mpi/debugger/Makefile
>
> config.status: creating src/mpi/errhan/Makefile
>
> config.status: creating src/mpi/group/Makefile
>
> config.status: creating src/mpi/init/Makefile
>
> config.status: creating src/mpi/misc/Makefile
>
> config.status: creating src/mpi/pt2pt/Makefile
>
> config.status: creating src/mpi/rma/Makefile
>
> config.status: creating src/mpi/spawn/Makefile
>
> config.status: creating src/mpi/timer/Makefile
>
> config.status: creating src/mpi/topo/Makefile
>
> config.status: creating src/mpid/Makefile
>
> config.status: creating src/mpid/common/Makefile
>
> config.status: creating src/mpid/common/datatype/Makefile
>
> config.status: creating src/mpid/common/datatype/dataloop/Makefile
>
> config.status: creating src/pm/Makefile
>
> config.status: creating src/pmi/Makefile
>
> config.status: creating src/pmi/simple/Makefile
>
> config.status: creating src/nameserv/Makefile
>
> config.status: creating src/nameserv/file/Makefile
>
> config.status: creating src/nameserv/mpd/Makefile
>
> config.status: creating src/nameserv/pmi/Makefile
>
> config.status: creating src/nameserv/test/Makefile
>
> config.status: creating src/util/Makefile
>
> config.status: creating src/util/info/Makefile
>
> config.status: creating src/util/instrm/Makefile
>
> config.status: creating src/util/thread/Makefile
>
> config.status: creating src/util/mem/Makefile
>
> config.status: creating src/util/msgs/Makefile
>
> config.status: creating src/util/param/Makefile
>
> config.status: creating src/util/dbg/Makefile
>
> config.status: creating src/util/dbg/getfuncstack
>
> config.status: creating src/util/osserv/Makefile
>
> config.status: creating src/util/procmap/Makefile
>
> config.status: creating src/util/other/Makefile
>
> config.status: creating src/include/mpi.h
>
> config.status: creating test/Makefile
>
> config.status: creating test/util/Makefile
>
> config.status: creating test/basic/Makefile
>
> config.status: creating test/commands/Makefile
>
> config.status: creating test/commands/cmdtests
>
> config.status: creating test/mpid/Makefile
>
> config.status: creating test/mpid/ch3/Makefile
>
> config.status: creating test/util/timer/Makefile
>
> config.status: creating examples/Makefile
>
> config.status: creating examples/f77/Makefile
>
> config.status: creating examples/f90/Makefile
>
> config.status: creating examples/cxx/Makefile
>
> config.status: creating src/util/logging/Makefile
>
> config.status: creating src/util/logging/common/Makefile
>
> config.status: creating doc/Makefile
>
> config.status: creating doc/mansrc/Makefile
>
> config.status: creating doc/mansrc/createhtmlindex
>
> config.status: creating src/include/mpichconf.h
>
> config.status: executing default-1 commands
>
> config.status: executing default-2 commands
>
> config.status: executing default-3 commands
>
> config.status: executing default-4 commands
>
> config.status: executing default-5 commands
>
> config.status: executing default-6 commands
>
> config.status: executing default-7 commands
>
> config.status: executing default-8 commands
>
> Updating dependency directories .deps
>
> config.status: executing default-9 commands
>
> config.status: executing default-10 commands
>
> config.status: executing default-11 commands
>
> config.status: executing default-12 commands
>
> config.status: executing default-13 commands
>
> === configuring in test/mpi (/root/download/mvapich2-1.6rc2/test/mpi)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp' --cache-file=/dev/null
> --srcdir=.
>
> RUNNING CONFIGURE FOR MPI TESTS
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking whether we are using the GNU Fortran 77 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes
>
> checking that f works as the extension for Fortran 90 program... yes
>
> checking whether we are using the GNU Fortran 90 compiler... no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... yes
>
> checking whether long double is supported... yes
>
> checking whether long long is supported... yes
>
> checking for an ANSI C-conforming const... yes
>
> checking for C/C++ restrict keyword... __restrict
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for sys/types.h... yes
>
> checking for sys/stat.h... yes
>
> checking for stdlib.h... yes
>
> checking for string.h... yes
>
> checking for memory.h... yes
>
> checking for strings.h... yes
>
> checking for inttypes.h... yes
>
> checking for stdint.h... yes
>
> checking for unistd.h... yes
>
> checking for unistd.h... (cached) yes
>
> checking stdarg.h usability... yes
>
> checking stdarg.h presence... yes
>
> checking for stdarg.h... yes
>
> checking for string.h... (cached) yes
>
> checking for stdlib.h... (cached) yes
>
> checking for memory.h... (cached) yes
>
> checking pthread.h usability... yes
>
> checking pthread.h presence... yes
>
> checking for pthread.h... yes
>
> checking for library containing pthread_create... -lpthread
>
> checking for library containing pthread_barrier_init... none required
>
> checking for pthread_create... yes
>
> checking for pthread_yield... yes
>
> checking for pthread_barrier_init... yes
>
> checking for pthread_barrier_wait... yes
>
> Configuring tests for MVAPICH2
>
> checking whether struct hostent contains h_addr_list... no
>
> checking whether integer*4 is supported... yes
>
> checking whether integer*8 is supported... yes
>
> checking whether integer*16 is supported... yes
>
> checking for Fortran 77 name mangling... lower underscore
>
> checking for Fortran libraries needed for getarg... none needed
>
> checking whether Fortran has pointer declaration... yes
>
> checking that f works as the extension for Fortran 90 program... yes
>
> checking whether we are using the GNU Fortran 90 compiler... (cached) no
>
> checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... (cached)
> yes
>
> checking for extension for Fortran 90 programs... f90
>
> checking whether the Fortran 90 compiler
> (/opt/pgi/linux86-64/10.5/bin/pgf90 -L/usr/lib64 ) works... yes
>
> checking whether the Fortran 90 compiler
> (/opt/pgi/linux86-64/10.5/bin/pgf90 -L/usr/lib64 ) is a cross-compiler...
> no
>
> checking whether Fortran 90 has Cray-style pointer declaration... yes
>
> checking whether MPI_2DOUBLE_COMPLEX is available... no
>
> checking size of void *... 8
>
> checking size of int... 4
>
> checking size of long... 8
>
> checking size of long long... 8
>
> checking size of short... 2
>
> checking for C integer type of address size... long
>
> checking for perl... /usr/bin/perl
>
> configure: creating ./config.status
>
> config.status: creating maint/testmerge
>
> config.status: creating runtests
>
> config.status: creating Makefile
>
> config.status: creating basic/Makefile
>
> config.status: creating attr/Makefile
>
> config.status: creating util/Makefile
>
> config.status: creating coll/Makefile
>
> config.status: creating comm/Makefile
>
> config.status: creating datatype/Makefile
>
> config.status: creating errhan/Makefile
>
> config.status: creating group/Makefile
>
> config.status: creating info/Makefile
>
> config.status: creating init/Makefile
>
> config.status: creating pt2pt/Makefile
>
> config.status: creating rma/Makefile
>
> config.status: creating spawn/Makefile
>
> config.status: creating topo/Makefile
>
> config.status: creating io/Makefile
>
> config.status: creating f77/Makefile
>
> config.status: creating f77/attr/Makefile
>
> config.status: creating f77/attr/attraints.h
>
> config.status: creating f77/pt2pt/attr1aints.h
>
> config.status: creating f77/ext/add1size.h
>
> config.status: creating f77/datatype/Makefile
>
> config.status: creating f77/datatype/typeaints.h
>
> config.status: creating f77/util/Makefile
>
> config.status: creating f77/coll/Makefile
>
> config.status: creating f77/comm/Makefile
>
> config.status: creating f77/topo/Makefile
>
> config.status: creating f77/init/Makefile
>
> config.status: creating f77/rma/addsize.h
>
> config.status: creating f77/pt2pt/Makefile
>
> config.status: creating f77/info/Makefile
>
> config.status: creating f77/spawn/Makefile
>
> config.status: creating f77/spawn/type1aint.h
>
> config.status: creating f77/rma/Makefile
>
> config.status: creating f77/ext/Makefile
>
> config.status: creating f77/ext/testlist
>
> config.status: creating f77/io/Makefile
>
> config.status: creating f77/io/iooffset.h
>
> config.status: creating f77/io/iodisp.h
>
> config.status: creating f77/io/ioaint.h
>
> config.status: creating f90/Makefile
>
> config.status: creating f90/attr/Makefile
>
> config.status: creating f90/datatype/Makefile
>
> config.status: creating f90/f90types/Makefile
>
> config.status: creating f90/util/Makefile
>
> config.status: creating f90/coll/Makefile
>
> config.status: creating f90/comm/Makefile
>
> config.status: creating f90/topo/Makefile
>
> config.status: creating f90/init/Makefile
>
> config.status: creating f90/pt2pt/Makefile
>
> config.status: creating f90/rma/Makefile
>
> config.status: creating f90/info/Makefile
>
> config.status: creating f90/spawn/Makefile
>
> config.status: creating f90/timer/Makefile
>
> config.status: creating f90/ext/Makefile
>
> config.status: creating f90/ext/testlist
>
> config.status: creating f90/io/Makefile
>
> config.status: creating f90/misc/Makefile
>
> config.status: creating cxx/Makefile
>
> config.status: creating cxx/util/Makefile
>
> config.status: creating cxx/attr/Makefile
>
> config.status: creating cxx/pt2pt/Makefile
>
> config.status: creating cxx/comm/Makefile
>
> config.status: creating cxx/coll/Makefile
>
> config.status: creating cxx/info/Makefile
>
> config.status: creating cxx/datatype/Makefile
>
> config.status: creating cxx/io/Makefile
>
> config.status: creating cxx/init/Makefile
>
> config.status: creating cxx/rma/Makefile
>
> config.status: creating cxx/spawn/Makefile
>
> config.status: creating threads/Makefile
>
> config.status: creating threads/pt2pt/Makefile
>
> config.status: creating threads/util/Makefile
>
> config.status: creating threads/comm/Makefile
>
> config.status: creating threads/init/Makefile
>
> config.status: creating threads/spawn/Makefile
>
> config.status: creating errors/Makefile
>
> config.status: creating errors/attr/Makefile
>
> config.status: creating errors/basic/Makefile
>
> config.status: creating errors/coll/Makefile
>
> config.status: creating errors/comm/Makefile
>
> config.status: creating errors/faults/Makefile
>
> config.status: creating errors/group/Makefile
>
> config.status: creating errors/pt2pt/Makefile
>
> config.status: creating errors/rma/Makefile
>
> config.status: creating errors/spawn/Makefile
>
> config.status: creating errors/topo/Makefile
>
> config.status: creating errors/io/Makefile
>
> config.status: creating errors/cxx/Makefile
>
> config.status: creating errors/cxx/errhan/Makefile
>
> config.status: creating errors/cxx/io/Makefile
>
> config.status: creating errors/f77/Makefile
>
> config.status: creating errors/f90/Makefile
>
> config.status: creating manual/Makefile
>
> config.status: creating manual/manyconnect
>
> config.status: creating perf/Makefile
>
> config.status: creating testlist
>
> config.status: creating cxx/testlist
>
> config.status: creating f77/testlist
>
> config.status: creating f90/testlist
>
> config.status: creating threads/testlist
>
> config.status: creating errors/testlist
>
> config.status: creating errors/cxx/testlist
>
> config.status: creating include/mpitestconf.h
>
> config.status: executing default-1 commands
>
> config.status: executing default-2 commands
>
> config.status: executing default-3 commands
>
> === configuring in src/pm/mpirun
> (/root/download/mvapich2-1.6rc2/src/pm/mpirun)
>
> configure: running /bin/sh ./configure --disable-option-checking
> '--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
> '--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
> '--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
> 'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp' --cache-file=/dev/null
> --srcdir=.
>
> RUNNING CONFIGURE FOR THE MPIRUN PM
>
> checking build system type... x86_64-unknown-linux-gnu
>
> checking for gcc... gcc
>
> checking for C compiler default output file name... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables...
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ISO C89... none needed
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether install works... yes
>
> checking whether mkdir -p works... yes
>
> checking for make... make
>
> checking whether clock skew breaks make... no
>
> checking whether make supports include... yes
>
> checking whether make allows comments in actions... yes
>
> checking for virtual path format... VPATH
>
> checking whether make sets CFLAGS... yes
>
> checking how to run the C preprocessor... gcc -E
>
> checking for grep that handles long lines and -e... /bin/grep
>
> checking for egrep... /bin/grep -E
>
> checking for ANSI C header files... yes
>
> checking for library containing ceil... -lm
>
> checking for strndup... yes
>
> checking for get_current_dir_name... yes
>
> checking whether to enable support for BLCR... no
>
> configure: creating ./config.status
>
> config.status: creating Makefile
>
> config.status: creating include/mpirunconf.h
>
> Configuration completed.
>
> Bright Yang
>
> Vaisala, Boulder
>
> This message contains privileged and/or confidential information intended
> solely for the use of the addressee(s) named above. Any disclosure,
> distribution, copying or use of the information by others is strictly
> prohibited. If you have received this message in error, please advise the
> sender by immediate reply and delete the original message.
>
>
>
> U.S. Export Restrictions & Disclaimer: Export of any technical information
> contained in this email and/or its attachments is subject to the export
> control laws and regulations of the U.S. Government and may require a valid
> license or written approval prior to export.
>
>
>
> _______________________________________________
> mvapich-discuss mailing list
> mvapich-discuss at cse.ohio-state.edu
> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>
>
--
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo
More information about the mvapich-discuss
mailing list