[mvapich-discuss] failure during startup when using mvapich2-1.2

Dan Kokron daniel.s.kokron at nasa.gov
Tue Nov 18 13:35:19 EST 2008


My first attempt to use mvapich2-1.2 fails with the following errors.
Any ideas why this is failing?

The config.log is attached.

mpirun_rsh -ssh -np 240 -hostfile machinefile ./GEOSgcm.x
[cli_14]: readline failed
Segmentation fault
[cli_10]: readline failed
[cli_11]: readline failed
[cli_12]: readline failed
[cli_8]: readline failed
[cli_15]: readline failed
[cli_9]: readline failed
[cli_13]: readline failed
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
[cli_0]: readline failed
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0

Child exited abnormally!
cleanupKilling remote processes...[cli_27]: readline failed
Broken pipe
[cli_4]: readline failed
[cli_6]: [cli_3]: readline failed
[cli_7]: readline failed
readline failed
[cli_1]: readline failed
[cli_2]: readline failed
[cli_5]: readline failed
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Broken pipe
[cli_24]: readline failed
[cli_30]: [cli_28]: readline failed
readline failed
[cli_25]: readline failed
[cli_29]: readline failed
[cli_31]: readline failed
[cli_26]: readline failed
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
Fatal error in MPI_Init_thread:
Other MPI error, error stack:
MPIR_Init_thread(310)...........: Initialization failed
MPID_Init(113)..................: channel initialization failed
MPIDI_CH3_Init(182).............: 
MPIDI_CH3I_SMP_Init(652)........: 
MPIDI_CH3I_SMP_pull_header(2599): PMI_KVS_Get returned 0
-- 
Dan Kokron
Global Modeling and Assimilation Office
NASA Goddard Space Flight Center
Greenbelt, MD 20771
Daniel.S.Kokron at nasa.gov
Phone: (301) 614-5192
Fax:   (301) 614-5304
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