[mvapich-discuss] Install MVAPICH 1

Stecher, Fred Fred.Stecher at atk.com
Mon Apr 14 12:24:39 EDT 2008 

 

-----Original Message-----
From: Jonathan Perkins [mailto:perkinjo at cse.ohio-state.edu] 
Sent: Monday, April 14, 2008 11:00 AM
To: Stecher, Fred
Subject: Re: [mvapich-discuss] Install MVAPICH 1

One more file, "config.log" and I should be able to look into why pgCC
couldn't be used.  I believe there may be some mismatch between using
gcc as your c compiler and pgf77 as the fortran compiler.

In the meantime while I'm inspecting your log files you can try using
gcc and
gfortran/g77 as your compilers to rebuild MVAPICH.  Then we can see if
this error persists when you try to rebuild your mpi application.

On Mon, Apr 14, 2008 at 10:29:32AM -0500, Stecher, Fred wrote:
>  
> 
> -----Original Message-----
> From: Jonathan Perkins [mailto:perkinjo at cse.ohio-state.edu]
> Sent: Monday, April 14, 2008 10:16 AM
> To: Stecher, Fred
> Cc: mvapich-discuss at cse.ohio-state.edu
> Subject: Re: [mvapich-discuss] Install MVAPICH 1
> 
> On Fri, Apr 11, 2008 at 03:46:04PM -0500, Stecher, Fred wrote:
> > Jonathan,
> > When I tried to rebuild my application the following error message 
> > was
> > output:
> > 
> > /data1/home/fstecher/mvapich/usr/local/mvapich/lib/libfmpich.a(dup_f
> > nf
> > .o
> > ): In function `pmpi_dup_fn_':
> > dup_fnf.c:(.text+0x23): undefined reference to `MPIR_F_TRUE'
> > dup_fnf.c:(.text+0x2a): undefined reference to `MPIR_F_FALSE'
> > /data1/home/fstecher/mvapich/usr/local/mvapich/lib/libfmpich.a(initi
> > al
> > iz
> > ef.o): In function `pmpi_initialized_':
> > initializef.c:(.text+0x27): undefined reference to `MPIR_F_TRUE'
> > initializef.c:(.text+0x2e): undefined reference to `MPIR_F_FALSE'
> > /data1/home/fstecher/mvapich/usr/local/mvapich/lib/libfmpich.a(null_
> > co
> > py
> > fnf.o): In function `pmpi_null_copy_fn_':
> > null_copyfnf.c:(.text+0x6): undefined reference to `MPIR_F_FALSE'
> 
> This looks like it may have something to do with the Fortran bindings.
> Can you forward us those other log files?
> 
> > 
> > Thanks,
> > 
> > Fred
> >  
> > 
> > -----Original Message-----
> > From: Jonathan Perkins [mailto:perkinjo at cse.ohio-state.edu]
> > Sent: Friday, April 11, 2008 7:37 AM
> > To: Stecher, Fred
> > Cc: mvapich-discuss at cse.ohio-state.edu
> > Subject: Re: [mvapich-discuss] Install MVAPICH 1
> > 
> > After you reinstalled MVAPICH, did you also rebuild your MPI 
> > application before running?  It's possible that you were still using

> > the old library when you restarted.
> > 
> > In order to debug the compiler issue I'd like to see the other log 
> > files as well.  Specifically the config.log and the config-mine.log.
> > 
> > On Thu, Apr 10, 2008 at 04:49:41PM -0500, Stecher, Fred wrote:
> > > Jonathan,
> > > I performed the ./make.mvapich.gen2 command and output to a 
> > > make.log
> 
> > > file. In the make.log file there was a Warning message. Also, the 
> > > pgcc
> > 
> > > compiler was not used. No Fortran compiler was used either. I have

> > > attached the make.log file. I then restarted my run.  Monitoring 
> > > the
> 
> > > InfiniBand network traffic indicated no traffic. Monitoring 
> > > Ethernet
> 
> > > indicated some traffic. I do not think that InfiniBand is being
> used.
> > > 
> > > 
> > > Thanks,
> > > 
> > > Fred
> > >  
> > > 
> > > -----Original Message-----
> > > From: Jonathan L. Perkins [mailto:perkinjo at cse.ohio-state.edu]
> > > Sent: Thursday, April 10, 2008 12:06 PM
> > > To: Stecher, Fred
> > > Subject: Re: [mvapich-discuss] Install MVAPICH 1
> > > 
> > > On Thu, Apr 10, 2008 at 11:53:37AM -0500, Stecher, Fred wrote:
> > > > So,
> > > > How do I make the InfiniBand version if make -f  
> > > > make.mvapich.gen2
> 
> > > > Errors out?
> > > 
> > > Don't call make yourself.  Just type in './make.mvapich.gen2' at 
> > > the
> 
> > > command line (without the quotes of course).  Before doing this, 
> > > be sure to export any variables that you may need to override in 
> > > make.mvapich.gen2.
> > > 
> > > For more information please see
> > > http://mvapich.cse.ohio-state.edu/support/mvapich_user_guide.html
> > > 
> > > Section 4 should answer most of your questions.
> > > 
> > > > 
> > > > Thanks,
> > > > 
> > > > Fred
> > > > 
> > > > -----Original Message-----
> > > > From: Jonathan L. Perkins [mailto:perkinjo at cse.ohio-state.edu]
> > > > Sent: Thursday, April 10, 2008 11:50 AM
> > > > To: Stecher, Fred
> > > > Subject: Re: [mvapich-discuss] Install MVAPICH 1
> > > > 
> > > > On Thu, Apr 10, 2008 at 11:23:49AM -0500, Stecher, Fred wrote:
> > > > > Hi,
> > > > > This is a follow-up to previous question concerning whether 
> > > > > MVAPICH
> > > > > 1 is using InfiniBand or Ethernet. Upon monitoring network 
> > > > > traffic, my executable is definitely using Ethernet.
> > > > > I have reinstalled MVAPICH. The user manual stated "Go to the 
> > > > > mvapich-1.0 directory. We have included a single script for
> > > > > OpenFabrics/Gen2 (make.mvapich.gen2) that takes care of 
> > > > > different platforms, compilers and architectures. By default, 
> > > > > the compilation script uses gcc. In order to select your 
> > > > > compiler, please set the variable CC in the script to use 
> > > > > either
> 
> > > > > Intel, PathScale or PGI compiler. The platform/architecture is

> > > > > detected automatically."  I tried make -f make.mvapich.gen2 
> > > > > with
> 
> > > > > following error
> > > > 
> > > > You should use ./make.mvapich.gen2
> > > > 
> > > > > message:
> > > > > make.mvapich.gen2:7: *** missing separator.  Stop.
> > > > > I then just typed make. This resulted in installation of some 
> > > > > version of MVAPICH. I am not sure what version. Do anyone know

> > > > > what version was installed or how to determine the version?
> > > > > 
> > > > 
> > > > By using make directly you almost certainly have made the TCP
> > version.
> > > > 
> > > > > Thanks,
> > > > > 
> > > > > Fred
> > > > > 
> > > > 
> > > > > _______________________________________________
> > > > > mvapich-discuss mailing list
> > > > > mvapich-discuss at cse.ohio-state.edu
> > > > > http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discus
> > > > > s
> > > > 
> > > > 
> > > > --
> > > > Jonathan Perkins
> > > > http://www.cse.ohio-state.edu/~perkinjo
> > > 
> > > --
> > > Jonathan Perkins
> > > http://www.cse.ohio-state.edu/~perkinjo
> > 
> > 
> > 
> > 
> > --
> > Jonathan Perkins
> > http://www.cse.ohio-state.edu/~perkinjo
> 
> --
> Jonathan Perkins
> http://www.cse.ohio-state.edu/~perkinjo




--
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo
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