[Columbus] Error in installation of Columbus in linux system

Wed Jun 15 09:54:31 EDT 2022

My *install.config *file looks like:
First one is (compatible to Newton-X)
2nd one is (interfaced with Molcas 8)

*Thank you !*

Kalpajyoti Dihingia
C/O -Prof. Biswajit Maiti
Department of Chemistry
Institute of Science
Banaras Hindu University
Varanasi-221005
Phone no: 7576867088, 9707836598

On Wed, Jun 15, 2022 at 7:12 PM Kalpa Dihingia <20jyotikalpa15 at gmail.com>
wrote:

>
> Dear Sir !
>
> I Downloaded the executables
> <https://urldefense.com/v3/__https://www.univie.ac.at/columbus/C70_beta_pre-release/Columbus.7.0/Col7.0.1_2021-01-14_for-NX_bin.tar.gz__;!!KGKeukY!yLYwTK569HsDx7nQJVOLp3CGC5-84HARq7rSUTN_ijT0pZX1H6rKGKIaVtyF13aI8x1Bq05DfO90-le6sFiAQsDiw3_w$ >which
> are compatible with Newton-X and gave the path as follows.
> Now, Can you please tell me how I can run the job?
> I also Downloaded the executables
> <https://urldefense.com/v3/__https://www.univie.ac.at/columbus/C70_beta_pre-release/Columbus.7.0/Col7.0.1_2020-10-09_linux64.ifc_bin.tar.gz__;!!KGKeukY!yLYwTK569HsDx7nQJVOLp3CGC5-84HARq7rSUTN_ijT0pZX1H6rKGKIaVtyF13aI8x1Bq05DfO90-le6sFiAQtvZBeTr$ >
> in a different directory and gave the path in the .bashrc file to work with
> openmolcas.
>
> Please tell me what else I should do after this.
>
> [image: Screenshot from 2022-06-15 18-56-28.png]
> I gave the path in the .bashrc file and did *source ~/.bashrc*
> *export cbsnx=/root/qm-software/columbus/columbus21NX/Columbus*
>
>
>
> *Thank you !*
>
> Kalpajyoti Dihingia
> C/O -Prof. Biswajit Maiti
> Department of Chemistry
> Institute of Science
> Banaras Hindu University
> Varanasi-221005
> Phone no: 7576867088, 9707836598
>
>
>
>
>
>
>
>
>
> On Tue, Jun 14, 2022 at 9:44 PM Kalpa Dihingia <20jyotikalpa15 at gmail.com>
> wrote:
>
>> Dear Sir!
>> I will let you know by tomorrow.
>> Thanks & Regards
>>
>> On Tue, Jun 14, 2022, 9:11 PM Hans Lischka <hans.lischka at univie.ac.at>
>> wrote:
>>
>>> Hi Kalpa,
>>>
>>> Did you check the possibility of using the executables. Please let me
>>> know whether you still have problems.
>>> Best regards, Hans
>>>
>>> On 6/11/2022 11:19 AM, Hans Lischka via Columbus wrote:
>>>
>>> Dear Kalpa, You do not need to compile Columbus, there are executables.
>>> I think this should work for you. You can get the executables form the
>>> Columbus download page. I strongly recommend this option. ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
>>> ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
>>> Dear Kalpa,
>>> You do not need to compile Columbus, there are executables. I think this
>>> should work for you. You can get the executables form the Columbus download
>>> page. I strongly recommend this option.
>>>
>>> If you really want to compile Columbus, you do not need to install cpan.
>>> There is an alternative: see
>>> https://urldefense.com/v3/__https://www.univie.ac.at/columbus/C70_beta_pre-release/bin_distrib.html__;!!KGKeukY!yLYwTK569HsDx7nQJVOLp3CGC5-84HARq7rSUTN_ijT0pZX1H6rKGKIaVtyF13aI8x1Bq05DfO90-le6sFiAQu_-3Aqx$ 
>>> <https://urldefense.com/v3/__https://www.univie.ac.at/columbus/C70_beta_pre-release/bin_distrib.html__;!!KGKeukY!3RgRS3nTkJe8J6kGH-A3kvilvwlz9Hx7vj2JYhFOK_SeNLDDMjgPgbn4I7j2BdYNcacnmD5aY_K9I2zSMltJeRSs8Km6FEw$>,
>>> point 4, the Note. The install.config file should not include the PERL
>>> path. How does your install.config file look like?
>>>
>>> Best regards, Hans
>>>
>>>
>>> On 6/11/2022 12:39 AM, Kalpa Dihingia via Columbus wrote:
>>>
>>> Dear Sir ! Same error is coming when I tried to install cpan. Thank you
>>> ! Kalpajyoti Dihingia C/O -Prof. Biswajit Maiti Department of Chemistry
>>> Institute of Science Banaras Hindu University ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
>>> ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
>>> Dear Sir !
>>> Same error is coming when I tried to install cpan.
>>>
>>> [image: Screenshot from 2022-06-11 11-06-52.png]
>>> [image: Screenshot from 2022-06-11 11-04-40.png]
>>>
>>> *Thank you !*
>>>
>>> Kalpajyoti Dihingia
>>> C/O -Prof. Biswajit Maiti
>>> Department of Chemistry
>>> Institute of Science
>>> Banaras Hindu University
>>> Varanasi-221005
>>> Phone no: 7576867088, 9707836598
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On Fri, Jun 10, 2022 at 7:00 PM Rene F. K. Spada <rfkspada at gmail.com>
>>> wrote:
>>>
>>>> Hi,
>>>>
>>>> Did you install the cpan before the standard package? Something like
>>>>
>>>> bash ./install.automatic -p linux64.ifc cpan
>>>>
>>>> Could you check if there was no error in this process?
>>>>
>>>> Em sex., 10 de jun. de 2022 às 08:53, Kalpa Dihingia via Columbus <
>>>> columbus at lists.osc.edu> escreveu:
>>>>
>>>>> Thank you ! Kalpajyoti Dihingia C/O -Prof. Biswajit Maiti Department
>>>>> of Chemistry Institute of Science Banaras Hindu University Varanasi-221005
>>>>> Phone no: 7576867088, 9707836598 ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
>>>>> ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
>>>>> ‍ ‍ ‍
>>>>>
>>>>>
>>>>> *Thank you !*
>>>>>
>>>>> Kalpajyoti Dihingia
>>>>> C/O -Prof. Biswajit Maiti
>>>>> Department of Chemistry
>>>>> Institute of Science
>>>>> Banaras Hindu University
>>>>> Varanasi-221005
>>>>> Phone no: 7576867088, 9707836598
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Fri, Jun 10, 2022 at 5:21 PM Kalpa Dihingia <
>>>>> 20jyotikalpa15 at gmail.com> wrote:
>>>>>
>>>>>> Dear Sir,
>>>>>> I have given the command as you showed to me.
>>>>>> ------------------------------------------------------------
>>>>>> root at ethene-X9DBL-3F-X9DBL-iF:~/qm-software/columbus/columbus# bash
>>>>>> ./install.automatic -p linux64.ifc standard
>>>>>>
>>>>>> [image: Screenshot from 2022-06-10 17-09-10.png]
>>>>>> And the error is coming as:
>>>>>> [image: Screenshot from 2022-06-10 17-06-59.png]
>>>>>>
>>>>>> I have attached a log file of the installation. Please check and let
>>>>>> me know the actual problem behind it
>>>>>>
>>>>>>
>>>>>> *Thank you !*
>>>>>>
>>>>>> Kalpajyoti Dihingia
>>>>>> C/O -Prof. Biswajit Maiti
>>>>>> Department of Chemistry
>>>>>> Institute of Science
>>>>>> Banaras Hindu University
>>>>>> Varanasi-221005
>>>>>> Phone no: 7576867088, 9707836598
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Fri, Jun 10, 2022 at 5:13 PM Kalpa Dihingia <
>>>>>> 20jyotikalpa15 at gmail.com> wrote:
>>>>>>
>>>>>>> Dear Sir,
>>>>>>> I have given the command as you showed to me.
>>>>>>> ------------------------------------------------------------
>>>>>>> root at ethene-X9DBL-3F-X9DBL-iF:~/qm-software/columbus/columbus# bash
>>>>>>> ./install.automatic -p linux64.ifc standard
>>>>>>>
>>>>>>>
>>>>>>> [image: Screenshot from 2022-06-10 17-09-10.png]
>>>>>>> And the error is coming as:
>>>>>>> [image: Screenshot from 2022-06-10 17-06-59.png]
>>>>>>> I have attached a log file of the installation. Please check and let
>>>>>>> me know the actual problem behind it
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> *Thank you !*
>>>>>>>
>>>>>>> Kalpajyoti Dihingia
>>>>>>> C/O -Prof. Biswajit Maiti
>>>>>>> Department of Chemistry
>>>>>>> Institute of Science
>>>>>>> Banaras Hindu University
>>>>>>> Varanasi-221005
>>>>>>> Phone no: 7576867088, 9707836598
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Thu, Jun 9, 2022 at 11:08 PM Felix Plasser via Columbus <
>>>>>>> columbus at lists.osc.edu> wrote:
>>>>>>>
>>>>>>>> You can try to add "bash" to the command bash ./install.automatic
>>>>>>>> -p linux64.ifc standard On 09/06/2022 08:18, Kalpa Dihingia via Columbus
>>>>>>>> wrote: ** THIS MESSAGE ORIGINATED OUTSIDE LOUGHBOROUGH UNIVERSITY ** ‍ ‍ ‍
>>>>>>>> ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
>>>>>>>>
>>>>>>>> You can try to add "bash" to the command
>>>>>>>>
>>>>>>>> bash ./install.automatic -p linux64.ifc standard
>>>>>>>> On 09/06/2022 08:18, Kalpa Dihingia via Columbus wrote:
>>>>>>>>
>>>>>>>> ** THIS MESSAGE ORIGINATED OUTSIDE LOUGHBOROUGH UNIVERSITY **
>>>>>>>>
>>>>>>>> ** Be wary of links or attachments, especially if the email is
>>>>>>>> unsolicited or you don't recognise the sender's email address. **
>>>>>>>> Dear Sir/Madam I am trying to install Columbus in root but getting
>>>>>>>> the following error.
>>>>>>>> ---------------------------------------------------------------------------------------------
>>>>>>>> root at ethene-X9DBL-3F-X9DBL-iF:~/qm-software/columbus/columbus#
>>>>>>>> Dear Sir/Madam
>>>>>>>> I am trying to install Columbus in root but getting the following
>>>>>>>> error.
>>>>>>>>
>>>>>>>>
>>>>>>>> ---------------------------------------------------------------------------------------------
>>>>>>>> root at ethene-X9DBL-3F-X9DBL-iF:~/qm-software/columbus/columbus#
>>>>>>>> ./install.automatic -p linux64.ifc standard
>>>>>>>> ./install.automatic: 383: Syntax error: word unexpected (expecting
>>>>>>>> ")")
>>>>>>>> root at ethene-X9DBL-3F-X9DBL-iF:~/qm-software/columbus/columbus#
>>>>>>>>
>>>>>>>> ----------------------------------------------------------------------------------------------
>>>>>>>> The line 383 in the install.automatic file is the following:
>>>>>>>>
>>>>>>>> [image: Screenshot from 2022-06-09 12-43-54.png]
>>>>>>>> We have completed all the previous steps of the installation
>>>>>>>> without getting an error message. Now we are stucked in this step. Can you
>>>>>>>> please find the solution to this.
>>>>>>>>
>>>>>>>> *Thank you !*
>>>>>>>>
>>>>>>>> Kalpajyoti Dihingia
>>>>>>>> C/O -Prof. Biswajit Maiti
>>>>>>>> Department of Chemistry
>>>>>>>> Institute of Science
>>>>>>>> Banaras Hindu University
>>>>>>>> Varanasi-221005
>>>>>>>> Phone no: 7576867088, 9707836598
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Columbus mailing listColumbus at lists.osc.eduhttps://lists.osu.edu/mailman/listinfo/columbus
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Columbus mailing list
>>>>>>>> Columbus at lists.osc.edu
>>>>>>>> https://lists.osu.edu/mailman/listinfo/columbus
>>>>>>>
>>>>>>> _______________________________________________
>>>>> Columbus mailing list
>>>>> Columbus at lists.osc.edu
>>>>> https://lists.osu.edu/mailman/listinfo/columbus
>>>>
>>>>
>>>>
>>>> --
>>>>
>>>>
>>>> *Rene Felipe Keidel Spada Físico por Formação, Humano por Natureza *
>>>> *Instituto Tecnológico de Aeronáutica*
>>>>
>>>
>>> _______________________________________________
>>> Columbus mailing listColumbus at lists.osc.eduhttps://lists.osu.edu/mailman/listinfo/columbus
>>>
>>>
>>>
>>> _______________________________________________
>>> Columbus mailing listColumbus at lists.osc.eduhttps://lists.osu.edu/mailman/listinfo/columbus
>>>
>>>
>>>
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