[OOD-users] OnDemand Cluster Config Issues

[Franz, Eric]

Chris,

The yaml content you pasted has “job:” without two spaces in front of it. Is that a paste issue or is that the actual yaml? It is important that “job:” be at the same indentation level as “metadata:” and “login:”.

What is an example of a job submission from the command line that works?

For the Torque adapter, it is using pbs-ruby gem and I believe this block of code is doing the actual job submission: https://github.com/OSC/pbs-ruby/blob/c05de926616ee0327ef997434dae766e5297ea95/lib/pbs/batch.rb#L427-L443

In this case, whatever is set as “host” in the job arguments is being used to set PBS_DEFAULT when calling qsub. So in the case below it would be executing:

PBS_DEFAULT=qsched02 /opt/moab/bin/qsub LD_LIBRARY_PATH=/opt/moab/lib:$LD_LIBRARY_PATH qsub …

If qsched02 is not the host but actually the queue and you intend to instead have qsub called like “qsub -q qsched02” then you need to take different steps to achieve that result.

Thanks,
Eric

---
Eric Franz, Senior Web & Interface App Engineer
Ohio Supercomputer Center
An Ohio Technology Consortium (OH-TECH) Member
1224 Kinnear Road
Columbus, OH 43212
email: efranz at osc.edu

From: OOD-users <ood-users-bounces at lists.osc.edu> on behalf of Christopher Ramirez <c.ramirez01 at gmail.com>
Reply-To: User support mailing list for Open OnDemand <ood-users at lists.osc.edu>
Date: Thursday, June 21, 2018 at 4:42 PM
To: "ood-users at lists.osc.edu" <ood-users at lists.osc.edu>
Subject: Re: [OOD-users] OnDemand Cluster Config Issues

Erik,

We're using torque/moab. I actually reached out to you a month ago regarding wrapper scripts etc..
Anyway, yes we tested command line submissions and are able to submit jobs from the command line.
v2:
  metadata:
    title: "qsched02"
  login:
    host: "system.hostname.com<http://system.hostname.com>"
job:
    adapter: "torque"
    host: "qsched02"
    lib: "/opt/moab/lib"
    bin: "/opt/moab/bin"

Even when we point OOD at the torque binaries, we get the same issues.


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