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This issue has been resolved. The solution is to use the patch from above and then run autogen.sh even with the new tars users may need to run autogen or else it will fail.</div>
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-Matt</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size: 11pt; color: rgb(0, 0, 0);"><b>From:</b> Korzennik, Sylvain <skorzennik@cfa.harvard.edu><br>
<b>Sent:</b> Friday, September 22, 2023 4:15 PM<br>
<b>To:</b> Lieber, Matt <lieber.31@osu.edu><br>
<b>Cc:</b> Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA) Libraries developed at NBCL/OSU <mvapich-discuss@lists.osu.edu><br>
<b>Subject:</b> Re: [Mvapich-discuss] ibmpifort.so: undefined reference to `CFI_is_contiguous'</font>
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With this version, I get to src/pm/mpirun/src/hostfile/parser. y: In function ‘commit’: src/pm/mpirun/src/hostfile/parser. y: 130: 15: warning: incompatible implicit declaration of built-in function ‘realloc’ [enabled by default] ptr = realloc(rank,
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<div class="x_gmail_default" style="font-size: small; color: rgb(53, 28, 117);">With this version, I get to</div>
<div class="x_gmail_default" style="font-size:small"><font face="monospace"><font style="color: rgb(0, 0, 255);">src/pm/mpirun/src/hostfile/parser.y: In function ‘commit’:</font><br>
<font style="color: rgb(0, 0, 255);">src/pm/mpirun/src/hostfile/parser.y:130:15: warning: incompatible implicit declaration of built-in function ‘realloc’ [enabled by default]</font><br>
<font style="color: rgb(0, 0, 255);"> ptr = realloc(rank, sizeof(struct rank_s) * n_alloc);</font><br>
<font style="color: rgb(0, 0, 255);"> ^</font><br>
<font style="color: rgb(0, 0, 255);">src/pm/mpirun/src/hostfile/parser.y: In function ‘read_hostfile’:</font><br>
<font style="color: rgb(0, 0, 255);">src/pm/mpirun/src/hostfile/parser.y:197:13: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]</font><br>
<font style="color: rgb(0, 0, 255);"> exit(EXIT_FAILURE);</font><br>
<font style="color: rgb(0, 0, 255);"> ^</font><br>
<font style="color: rgb(255, 0, 0);">src/pm/mpirun/src/hostfile/parser.y:197:18: error: ‘EXIT_FAILURE’ undeclared (first use in this function)<br>
exit(EXIT_FAILURE);<br>
^<br>
src/pm/mpirun/src/hostfile/parser.y:197:18: note: each undeclared identifier is reported only once for each function it appears in<br>
src/pm/mpirun/src/hostfile/parser.y:212:2: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]<br>
exit(EXIT_FAILURE);</font><br>
<font style="color: rgb(0, 0, 255);"> ^</font><br>
<font style="color: rgb(0, 0, 255);">src/pm/mpirun/src/hostfile/parser.y:222:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]</font><br>
<font style="color: rgb(0, 0, 255);"> exit(EXIT_FAILURE);</font><br>
<font style="color: rgb(0, 0, 255);"> ^</font><br>
<font style="color: rgb(0, 0, 255);">src/pm/mpirun/src/hostfile/parser.y:230:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default]</font><br>
<font style="color: rgb(0, 0, 255);"> exit(EXIT_FAILURE);</font><br>
<font style="color: rgb(0, 0, 255);"> ^</font><br>
<font style="color: rgb(0, 0, 255);">make[2]: *** [src/pm/mpirun/src/hostfile/src_pm_mpirun_src_hostfile_libhostfile_a-parser.o] Error 1</font><br>
<font style="color: rgb(0, 0, 255);">make[2]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'</font><br>
<font style="color: rgb(0, 0, 255);">make[1]: *** [all-recursive] Error 1</font><br>
<font style="color: rgb(0, 0, 255);">make[1]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'</font><br>
<font style="color: rgb(0, 0, 255);">make: *** [all] Error 2</font></font><br>
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<div class="x_gmail_default" style="font-size: small; color: rgb(53, 28, 117);"><br>
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<div class="x_gmail_default" style="font-size:small"><font style="color: rgb(53, 28, 117);">I'll poke around to see where
</font><span style="font-family: monospace; color: rgb(255, 0, 0);">E</span><span style="font-family: monospace; color: rgb(255, 0, 0);">XIT_FAILUR</span><span style="font-family: monospace; color: rgb(255, 0, 0);">E
</span><font style="color: rgb(53, 28, 117);"><span style="font-family:monospace">is
</span>defined, etc... but the patch isn't clean. BTW, I used</font></div>
<div class="x_gmail_default" style="font-size:small"><font face="monospace" style="color: rgb(0, 0, 255);">./configure --disable-f08 -prefix=/...<br>
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<div dir="ltr"><font size="2"><span style="color: rgb(53, 28, 117);"> </span></font><span style="color: rgb(53, 28, 117);"> Cheers,</span><font size="2"><span style="color: rgb(53, 28, 117);"><br>
Sylvain<br>
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<div dir="ltr" class="x_gmail_attr">On Fri, Sep 22, 2023 at 11:34 AM Lieber, Matt <<a href="mailto:lieber.31@osu.edu" data-loopstyle="linkonly" id="OWA579ebf16-07c9-688d-0174-326529e1aa98" class="OWAAutoLink">lieber.31@osu.edu</a>> wrote:<br>
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<span style="font-size: 12pt; margin: 0px; color: black; background-color: rgb(255, 255, 255);"><span style="margin: 0px; background-color: white;">Hi Sylvain,</span></span>
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<span style="margin: 0px; background-color: white;">Sorry to hear you still have issues. I think this is because autogen was not run which is required when changes to the
<a href="https://urldefense.com/v3/__http://configure.ac__;!!KGKeukY!zavLw3zYlg7mz-SuhFcdW0-4R9sb5_Txlxo4iYmMiWBWyACvsoNpgPrAEPdftSUDGfHVYx9ai2YzeJCUrB5oufVJ0XhH$" data-auth="NotApplicable" data-loopstyle="linkonly" id="OWA490a2da4-bfec-3dc0-9d92-237b54bbde81" class="OWAAutoLink">
configure.ac</a> are made. Here is a tar that I have made please try these and let me know if there are still any issues.<br>
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</span></div>
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<span style="margin: 0px; background-color: white;"><span><a href="https://urldefense.com/v3/__https://buckeyemailosu-my.sharepoint.com/:u:/g/personal/lieber_31_osu_edu/Edlz4H8TpXlAvUU9GUbgG70BTf20B55777B5EdBaht2iSA?e=wCqN3V__;!!KGKeukY!zavLw3zYlg7mz-SuhFcdW0-4R9sb5_Txlxo4iYmMiWBWyACvsoNpgPrAEPdftSUDGfHVYx9ai2YzeJCUrB5ouQ0z718W$" data-auth="NotApplicable" id="x_m_-8196015484634552687OLK_Beautified_OWA92b3e5f2-217f-14a4-f821-8e68e9465234" style="padding: 0px 1px; border-radius: 2px; background-color: rgb(243, 242, 241);" data-loopstyle="linkonly" class="OWAAutoLink"><img alt="" role="presentation" style="width:16px; height:16px; vertical-align:middle; padding:1px 2px 2px 0px" src="https://res-h3.public.cdn.office.net/assets/mail/file-icon/png/generic_16x16.png">mvapich2-2.3.7-1.tar.gz</a></span> <br>
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<span style="margin: 0px; background-color: white;">Thanks,</span></div>
<span style="font-size: 12pt; margin: 0px; color: black; background-color: rgb(255, 255, 255);"><span style="margin: 0px; background-color: white;">Matt</span></span><br>
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<div id="x_m_-8196015484634552687divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size: 11pt; color: rgb(0, 0, 0);"><b>From:</b> Korzennik, Sylvain <<a href="mailto:skorzennik@cfa.harvard.edu" data-loopstyle="linkonly" id="OWA4dd0089d-d9d7-0d4c-729d-df4cbef60103" class="OWAAutoLink">skorzennik@cfa.harvard.edu</a>><br>
<b>Sent:</b> Thursday, September 21, 2023 5:33 PM<br>
<b>To:</b> Lieber, Matt <<a href="mailto:lieber.31@osu.edu" data-loopstyle="linkonly" id="OWAb18eef63-a2df-cb44-73da-179ad33feabc" class="OWAAutoLink">lieber.31@osu.edu</a>><br>
<b>Cc:</b> Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA) Libraries developed at NBCL/OSU <<a href="mailto:mvapich-discuss@lists.osu.edu" data-loopstyle="linkonly" id="OWAb902d857-a050-cbb7-8e65-2f0d956fe95c" class="OWAAutoLink">mvapich-discuss@lists.osu.edu</a>><br>
<b>Subject:</b> Re: [Mvapich-discuss] ibmpifort.so: undefined reference to `CFI_is_contiguous'</font>
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Thx Matt, but 1- I had to execute /bin/sh /local/hpc/nvidia/23. 7/mvapich2-2. 3. 7-1/confdb/missing aclocal -I confdb /bin/sh /local/hpc/nvidia/23. 7/mvapich2-2. 3. 7-1/confdb/missing automake --foreign b/c the make was trying to execute /bin/sh
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<div style="font-size: small; color: rgb(53, 28, 117);">Thx Matt, but</div>
<div style="font-size: small; color: rgb(53, 28, 117);"><br>
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<div style="font-size: small; color: rgb(53, 28, 117);">1- I had to execute </div>
<div style="font-size:small"><font face="monospace" style="color: rgb(0, 0, 255);"> /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing aclocal -I confdb<br>
/bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing automake --foreign</font><br>
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<div style="font-size: small; color: rgb(53, 28, 117);"><font face="arial, sans-serif">b/c the make was trying to execute</font></div>
<div style="font-size:small"><font face="monospace" style="color: rgb(0, 0, 255);"> /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing aclocal-1.15 -I confdb</font></div>
<div style="font-size:small"><font face="monospace"><font style="color: rgb(0, 0, 255);"> /bin/sh /local/hpc/nvidia/23.7/mvapich2-2.3.7-1/confdb/missing automake-1.15 --foreign</font><br>
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<div><font size="2"><span style="color: rgb(53, 28, 117);"><span style="font-size: small; color: rgb(53, 28, 117);">b/c the
<a href="https://urldefense.com/v3/__http://configure.ac__;!!KGKeukY!2msSyVSCwsxQmNkdBFxbFYZi7st28k_-41G55m9ua21Gx6frh-dQaJ8e80ElBTMtWC8IYCWbjqPCnl3y9x0HDygfO0Se$" data-auth="NotApplicable" data-loopstyle="linkonly" id="OWAf9955919-9e48-3552-74da-7749495d9e82" class="OWAAutoLink">
configure.ac</a> was modified by the patching, and looking for aclocal-1.15 automake-1.15 fail.</span></span></font></div>
<div><font size="2"><span style="color: rgb(53, 28, 117);"><span style="font-size: small; color: rgb(53, 28, 117);"><br>
</span></span></font></div>
<div><span style="color: rgb(53, 28, 117);"><span style="font-size: small; color: rgb(53, 28, 117);"> After that the make reran the config (--recheck) and then croaks on</span></span></div>
<div><span style="color: rgb(53, 28, 117);"><span style="font-size: small; color: rgb(53, 28, 117);"><br>
</span></span></div>
<div><font face="monospace" style="color: rgb(255, 0, 0);">make all-recursive<br>
make[1]: Entering directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'<br>
make[1]: execvp: /bin/sh: Argument list too long<br>
make[1]: *** [all-recursive] Error 127<br>
make[1]: Leaving directory `/local/hpc/nvidia/23.7/mvapich2-2.3.7-1'<br>
make: *** [all] Error 2</font><br>
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<div style="font-size: small; color: rgb(53, 28, 117);">What am I missing???</div>
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<div dir="ltr"><font size="2"><span style="color: rgb(53, 28, 117);"> </span></font><span style="color: rgb(53, 28, 117);"> Cheers,</span><font size="2"><span style="color: rgb(53, 28, 117);"><br>
Sylvain<br>
--<br>
</span><font size="2"><br>
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<div dir="ltr">On Thu, Sep 21, 2023 at 1:32 PM Lieber, Matt <<a href="mailto:lieber.31@osu.edu" data-loopstyle="linkonly" id="OWA085b503f-6bfc-5395-11b7-2d989b040868" class="OWAAutoLink">lieber.31@osu.edu</a>> wrote:<br>
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Hi Sylvain,</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Thank you for the report, we think we have a patch that can fix this issue. Please use the attached patch with --disable-f08 and let us know if you have any other questions.</div>
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-Matt</div>
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<font face="Calibri, sans-serif" style="font-size: 11pt; color: rgb(0, 0, 0);"><b>From:</b> Mvapich-discuss <<a href="mailto:mvapich-discuss-bounces@lists.osu.edu" data-loopstyle="linkonly" id="OWA9bf258bf-b3bc-f366-4200-ba5a1a3e0706" class="OWAAutoLink">mvapich-discuss-bounces@lists.osu.edu</a>>
on behalf of Korzennik, Sylvain via Mvapich-discuss <<a href="mailto:mvapich-discuss@lists.osu.edu" data-loopstyle="linkonly" id="OWA67543e7d-c88e-b6d9-1e32-768f4289969b" class="OWAAutoLink">mvapich-discuss@lists.osu.edu</a>><br>
<b>Sent:</b> Tuesday, September 19, 2023 6:54 PM<br>
<b>To:</b> Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA) Libraries developed at NBCL/OSU <<a href="mailto:mvapich-discuss@lists.osu.edu" data-loopstyle="linkonly" id="OWAb104591c-0db9-1d4c-ad92-c0ef8e1f65be" class="OWAAutoLink">mvapich-discuss@lists.osu.edu</a>><br>
<b>Subject:</b> [Mvapich-discuss] ibmpifort.so: undefined reference to `CFI_is_contiguous'</font>
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I was able to build mvapich2-2. 3. 7-1 w/ nvidia's compiler ver 23. 5 or 23. 7 under CO7 (w/ same tweaks as when using ver 23. 3), but I can't compile a trivial MPI test program w/ either version: % mpif90 -o ring0f ring0f. o /share/apps/nvidia/Linux_x86_64/23. 5/mvapich2-2. 3. 7-1/lib/libmpifort. so:
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<div style="font-size: small; color: rgb(53, 28, 117);">I was able to build mvapich2-2.3.7-1 w/ nvidia's compiler ver 23.5 or 23.7 under CO7 (w/ same tweaks as when using ver 23.3), but I can't compile a trivial MPI test program w/ either version:</div>
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<div style="font-size:small"><font face="monospace" style="color: rgb(0, 0, 255);">% mpif90 -o ring0f ring0f.o<br>
/share/apps/nvidia/Linux_x86_64/23.5/mvapich2-2.3.7-1/lib/libmpifort.so: undefined reference to `CFI_is_contiguous'</font><br>
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<div style="font-size: small; color: rgb(53, 28, 117);">or</div>
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<div style="font-size:small"><font face="monospace" style="color: rgb(0, 0, 255);">% mpif90 -o ring0f ring0f.o<br>
/share/apps/nvidia/Linux_x86_64/23.7/mvapich2-2.3.7-1/lib/libmpifort.so: undefined reference to `CFI_is_contiguous'</font><br>
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<div style="font-size: small; color: rgb(53, 28, 117);">Anyone ran into this and has a solution? Rebuilding w/ --disable-f08 in the config step does not help (based on
<a href="https://urldefense.com/v3/__https://github.com/pmodels/mpich/issues/6505__;!!KGKeukY!2u0ZW6taxuRSfFe8Dk9FewQ4ND7Y-Ju0qBVz8Px7kDWV693LGxXFKlcoAd77SHwXNULF6xYZ9Lli75GOIA1Lc3yIM33ujPVzm2KqxA$" data-auth="NotApplicable" data-loopstyle="linkonly" id="OWA24c9853f-effb-9a55-ae96-8eabf57fdeed" class="OWAAutoLink">
https://github.com/pmodels/mpich/issues/6505</a> for MPICH)</div>
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<div dir="ltr"><font size="2"><span style="color: rgb(53, 28, 117);"> </span></font><span style="color: rgb(53, 28, 117);"> Cheers,</span><font size="2"><span style="color: rgb(53, 28, 117);"><br>
Sylvain<br>
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