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Hi Hari, Thanks for the quick response. I wasn’t able to find the particular combination I’m using for the GDR rpm here: http://mvapich.cse.ohio-state.edu/downloads/ I did submit a request using the link you shared though Tesla GPU architecture
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<p class="MsoNormal"><span style="font-size:11.0pt">Hi </span><span style="font-size:11.0pt;color:black">Hari</span><span style="font-size:11.0pt">,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Thanks for the quick response.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I wasn’t able to find the particular combination I’m using for the GDR rpm here:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><a href="http://mvapich.cse.ohio-state.edu/downloads/">http://mvapich.cse.ohio-state.edu/downloads/</a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I did submit a request using the link you shared though Tesla GPU architecture was not in the option list.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Would be looking forward to see that RPM package available soon.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Thanks again for your help.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<div>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">Mariana Levi, Ph.D.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">Computational Scientist<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif;color:black">Research Computing, Information Technology Services</span><span style="font-family:"Arial",sans-serif"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif;color:black">Northeastern University</span><span style="font-family:"Arial",sans-serif"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">617-470-4022<o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal" style="margin-bottom:12.0pt"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">Subramoni, Hari <subramoni.1@osu.edu><br>
<b>Date: </b>Tuesday, August 16, 2022 at 10:00 PM<br>
<b>To: </b>Levi, Mariana <m.levi@northeastern.edu>, mvapich-discuss@lists.osu.edu <mvapich-discuss@lists.osu.edu><br>
<b>Cc: </b>Subramoni, Hari <subramoni.1@osu.edu><br>
<b>Subject: </b>RE: Error compiling with CUDA 11.4 and GNU 11.1.0<o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span style="font-size:11.0pt">Hello, Dr. Levi.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">We only have basic support for GPU-enabled clusters in MVAPICH2 2.3.7.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">For best performance, functionality, and the latest features on GPU-enabled clusters, we strongly recommend using MVAPICH2-GDR. It is available as an RPM package from our download page.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">If you do not find the exact version you’re looking for, kindly fill out this form and we can build it for you.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><a href="https://urldefense.com/v3/__https://nam12.safelinks.protection.outlook.com/?url=http*3A*2F*2Fmvapich.cse.ohio-state.edu*2FGDRform*2F&data=05*7C01*7Cm.levi*40northeastern.edu*7C930cf67f5f414b92b13e08da7fb989b4*7Ca8eec281aaa34daeac9b9a398b9215e7*7C0*7C0*7C637962732117709675*7CUnknown*7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0*3D*7C3000*7C*7C*7C&sdata=J8E0tjx7qFKzc*2BudLpQL4Ulz8eFVVbsqoXzheS8KGPY*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJSUlJSUlJQ!!KGKeukY!wSYGRcSjLLn8Myot8eYRQfY_UHxf_iz4eMKWOoXtZgppmdCdzas7ET87OaDnMLIZJ-zab2qCzoHeY-_1IIvCRicyXH3Osfaj$">http://mvapich.cse.ohio-state.edu/GDRform/</a></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best,</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Hari.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<div style="border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span style="font-size:11.0pt">From:</span></b><span style="font-size:11.0pt"> Mvapich-discuss <mvapich-discuss-bounces@lists.osu.edu>
<b>On Behalf Of </b>Levi, Mariana via Mvapich-discuss<br>
<b>Sent:</b> Tuesday, August 16, 2022 2:48 PM<br>
<b>To:</b> mvapich-discuss@lists.osu.edu<br>
<b>Subject:</b> [Mvapich-discuss] Error compiling with CUDA 11.4 and GNU 11.1.0</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span style="font-size:12.0pt"> <o:p></o:p></span></p>
<div>
<p class="MsoNormal" style="mso-line-height-alt:.75pt"><span style="font-size:1.0pt;color:white">Hi MVAPICH2 team, I’m trying to install a MVAPICH 2.3.7 with GNU 11.1.0 and CUDA 11.4 on an HPC cluster (Centos 7). I’m using the following command: FFLAGS="-w
-fallow-argument-mismatch -O2" ../configure --prefix=/shared/centos7/mvapich2/2.3.7-gcc11.1-cuda11.4
</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span style="font-size:11.0pt">Hi MVAPICH2 team,</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I’m trying to install a MVAPICH 2.3.7 with GNU 11.1.0 and CUDA 11.4 on an HPC cluster (Centos 7). I’m using the following command:<br>
<br>
</span><span style="font-family:"Courier New"">FFLAGS="-w -fallow-argument-mismatch -O2" ../configure --prefix=/shared/centos7/mvapich2/2.3.7-gcc11.1-cuda11.4 --with-device=ch3:mrail --with-rdma=gen2 --enable-threads=multiple --enable-fortran=all --enable-fast
--with-pmi=pmi2 --with-pm=slurm --enable-slurm=yes --with-libcuda=/shared/centos7/cuda/11.4/targets/x86_64-linux/lib/stubs --with-libcudart=/shared/centos7/cuda/11.4/targets/x86_64-linux/lib --with-cuda=/shared/centos7/cuda/11.4 --with-cuda-include=/shared/centos7/cuda/11.4/include
--with-cuda-libpath=/shared/centos7/cuda/11.4/lib64<br>
<br>
make -j</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">The architecture I’m building on is Intel(R) Xeon(R) Gold 6132 CPU @ 2.60GHz (Skylake_avx512 microarchitecture) with V100 NVIDIA GPUs, and InfiniBand network (Mellanox OFED version 5.3) support.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Could you please assist with the following errors I’m getting:</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:</span></b><span style="font-family:"Courier New""> In function ‘hwloc_opencl_query_device<b>s</b>’:</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:108:5:</span></b><span style="font-family:"Courier New"">
<b>error: </b>unknown type name ‘<b>cl_device_topology_amd</b>’</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 108 | <b>cl_device_topology_amd</b> amdtopo;</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> | <b>^~~~~~~~~~~~~~~~~~~~~~</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:171:9:</span></b><span style="font-family:"Courier New"">
<b>error: </b>‘<b>CL_DEVICE_TOPOLOGY_TYPE_PCIE_AMD</b>’ undeclared (first use in this function); did you mean ‘<b>CL_DEVICE_TOPOLOGY_AMD</b>’?</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 171 | if (<b>CL_DEVICE_TOPOLOGY_TYPE_PCIE_AMD</b> != amdtopo.raw.type) {</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> | <b>^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> | CL_DEVICE_TOPOLOGY_AMD</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:171:9:</span></b><span style="font-family:"Courier New"">
<b>note: </b>each undeclared identifier is reported only once for each function it appears in</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:171:52:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>raw</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 171 | if (CL_DEVICE_TOPOLOGY_TYPE_PCIE_AMD != amdtopo<b>.</b>raw.type) {</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:172:53:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>raw</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 172 | hwloc_debug("not a PCIe device: %u\n", amdtopo<b>.</b>raw.type);</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:178:40:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>pcie</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 178 | info->specific.amd.pcibus = amdtopo<b>.</b>pcie.bus;</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:179:40:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>pcie</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 179 | info->specific.amd.pcidev = amdtopo<b>.</b>pcie.device;</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:180:41:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>pcie</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 180 | info->specific.amd.pcifunc = amdtopo<b>.</b>pcie.function;</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:183:35:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>pcie</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 183 | (unsigned) amdtopo<b>.</b>pcie.bus, (unsigned) amdtopo.pcie.device, (unsigned) amdtopo.pcie.function);</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:183:64:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>pcie</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 183 | (unsigned) amdtopo.pcie.bus, (unsigned) amdtopo<b>.</b>pcie.device, (unsigned) amdtopo.pcie.function);</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-family:"Courier New"">../../../../contrib/hwloc_v1/src/topology-opencl.c:183:96:</span></b><span style="font-family:"Courier New"">
<b>error: </b>request for member ‘<b>pcie</b>’ in something not a structure or union</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> 183 | (unsigned) amdtopo.pcie.bus, (unsigned) amdtopo.pcie.device, (unsigned) amdtopo<b>.</b>pcie.function);</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""> |
<b>^</b></span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make[3]: *** [topology-opencl.lo] Error 1</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make[3]: *** Waiting for unfinished jobs....</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make[3]: Leaving directory `/shared/centos7/mvapich2/src/mvapich2-2.3.7/build-gcc11.1-cuda11.4/contrib/hwloc_v1/src'</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make[2]: *** [all-recursive] Error 1</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make[2]: Leaving directory `/shared/centos7/mvapich2/src/mvapich2-2.3.7/build-gcc11.1-cuda11.4/contrib/hwloc_v1'</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make[1]: *** [all-recursive] Error 1</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make[1]: Leaving directory `/shared/centos7/mvapich2/src/mvapich2-2.3.7/build-gcc11.1-cuda11.4'</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">make: *** [all] Error 2</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I’ve also attached the config.log file for reference.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Thanks in advance for your assistance.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best,</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> </span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">Mariana Levi, Ph.D.</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">Computational Scientist</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif;color:black">Research Computing, Information Technology Services</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif;color:black">Northeastern University</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">617-470-4022</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt"> <o:p></o:p></span></p>
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