[Mvapich-discuss] OMB v7.1 - Build fails due to pointer-related issues in osu_util_mpi.c
Kandes, Martin
mkandes at sdsc.edu
Wed Jun 21 14:56:10 EDT 2023
Hi Hari,
Was this a recent fix? This build issue was noticed on 6/17/23 [1] using the v7.1 tarball. However, maybe now I see a '-1' added to the end of the tarball name [2], which was not included the name of the tarball I used.
Marty
[1]
-rw-rw-r-- 1 ubuntu ubuntu 3.3K Jun 17 22:12 Singularity.omb-7.1-ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3
-rwxr-xr-x 1 ubuntu ubuntu 779M Jun 17 22:13 omb-7.1-ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3.sif
[2]
https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-7.1-1.tar.gz
________________________________
From: Subramoni, Hari <subramoni.1 at osu.edu>
Sent: Tuesday, June 20, 2023 5:39 AM
To: Kandes, Martin <mkandes at sdsc.edu>; Announcement about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA) Libraries developed at NBCL/OSU <mvapich-discuss at lists.osu.edu>
Cc: Subramoni, Hari <subramoni.1 at osu.edu>
Subject: RE: [Mvapich-discuss] OMB v7.1 - Build fails due to pointer-related issues in osu_util_mpi.c
Hi, Marty.
We have seen this issue in the past. It is because of a difference in the datatype objects being used by MPICH derivatives and OpenMPI. I believe we had fixed this issue and updated the tarball on the website with the fix.
Can you please let us know if the latest tarball fixes things for you?
Thx,
Hari.
From: Mvapich-discuss <mvapich-discuss-bounces+subramon=cse.ohio-state.edu at lists.osu.edu> On Behalf Of Kandes, Martin via Mvapich-discuss
Sent: Saturday, June 17, 2023 6:35 PM
To: mvapich-discuss at lists.osu.edu
Subject: [Mvapich-discuss] OMB v7.1 - Build fails due to pointer-related issues in osu_util_mpi.c
Hi all, Has anyone run into this build issue yet [1}? If not, I can post more details. No issue backing off to OMB v6. 2. Marty [1] .. . config. status: executing libtool commands Making all in c make[1]: Entering directory '/tmp/osu-micro-benchmarks-7. 1/c'
Hi all,
Has anyone run into this build issue yet [1}? If not, I can post more details. No issue backing off to OMB v6.2.
Marty
[1]
...
config.status: executing libtool commands
Making all in c
make[1]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c'
Making all in mpi
make[2]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c/mpi'
Making all in pt2pt
make[3]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt'
Making all in standard
make[4]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt/standard'
depbase=`echo osu_bibw.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
mpicc -DPACKAGE_NAME=\"OSU-Micro-Benchmarks\" -DPACKAGE_TARNAME=\"osu-micro-benchmarks\" -DPACKAGE_VERSION=\"7.1\" -DPACKAGE_STRING=\"OSU-Micro-Benchmarks\ 7.1\" -DPACKAGE_BUGREPORT=\"mvapich-discuss at cse.ohio-state.edu\<mailto:mvapich-discuss at cse.ohio-state.edu\>" -DPACKAGE_URL=\"\" -DPACKAGE=\"osu-micro-benchmarks\" -DVERSION=\"7.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_MATH_H=1 -DHAVE_GETPAGESIZE=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_SQRT=1 -DFIELD_WIDTH=18 -DFLOAT_PRECISION=2 -I. -I../../../../c/util -g -O2 -MT osu_bibw.o -MD -MP -MF $depbase.Tpo -c -o osu_bibw.o osu_bibw.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo ../../../util/osu_util.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
mpicc -DPACKAGE_NAME=\"OSU-Micro-Benchmarks\" -DPACKAGE_TARNAME=\"osu-micro-benchmarks\" -DPACKAGE_VERSION=\"7.1\" -DPACKAGE_STRING=\"OSU-Micro-Benchmarks\ 7.1\" -DPACKAGE_BUGREPORT=\"mvapich-discuss at cse.ohio-state.edu\<mailto:mvapich-discuss at cse.ohio-state.edu\>" -DPACKAGE_URL=\"\" -DPACKAGE=\"osu-micro-benchmarks\" -DVERSION=\"7.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_MATH_H=1 -DHAVE_GETPAGESIZE=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_SQRT=1 -DFIELD_WIDTH=18 -DFLOAT_PRECISION=2 -I. -I../../../../c/util -g -O2 -MT ../../../util/osu_util.o -MD -MP -MF $depbase.Tpo -c -o ../../../util/osu_util.o ../../../util/osu_util.c &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo ../../../util/osu_util_mpi.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
mpicc -DPACKAGE_NAME=\"OSU-Micro-Benchmarks\" -DPACKAGE_TARNAME=\"osu-micro-benchmarks\" -DPACKAGE_VERSION=\"7.1\" -DPACKAGE_STRING=\"OSU-Micro-Benchmarks\ 7.1\" -DPACKAGE_BUGREPORT=\"mvapich-discuss at cse.ohio-state.edu\<mailto:mvapich-discuss at cse.ohio-state.edu\>" -DPACKAGE_URL=\"\" -DPACKAGE=\"osu-micro-benchmarks\" -DVERSION=\"7.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_MATH_H=1 -DHAVE_GETPAGESIZE=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_SQRT=1 -DFIELD_WIDTH=18 -DFLOAT_PRECISION=2 -I. -I../../../../c/util -g -O2 -MT ../../../util/osu_util_mpi.o -MD -MP -MF $depbase.Tpo -c -o ../../../util/osu_util_mpi.o ../../../util/osu_util_mpi.c &&\
mv -f $depbase.Tpo $depbase.Po
../../../util/osu_util_mpi.c: In function 'omb_assign_to_type':
../../../util/osu_util_mpi.c:1411:13: error: switch quantity not an integer
1411 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:1412:9: error: pointers are not permitted as case values
1412 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:1416:9: error: pointers are not permitted as case values
1416 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c:1419:9: error: pointers are not permitted as case values
1419 | case MPI_FLOAT:
| ^~~~
../../../util/osu_util_mpi.c: In function 'omb_get_num_elements':
../../../util/osu_util_mpi.c:1430:13: error: switch quantity not an integer
1430 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:1431:9: error: pointers are not permitted as case values
1431 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:1434:9: error: pointers are not permitted as case values
1434 | case MPI_FLOAT:
| ^~~~
../../../util/osu_util_mpi.c:1437:9: error: pointers are not permitted as case values
1437 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c: In function 'omb_validate_neighbour_col':
../../../util/osu_util_mpi.c:1970:21: error: switch quantity not an integer
1970 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:1971:17: error: pointers are not permitted as case values
1971 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:1980:17: error: pointers are not permitted as case values
1980 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c:1988:17: error: pointers are not permitted as case values
1988 | case MPI_FLOAT:
| ^~~~
../../../util/osu_util_mpi.c: In function 'validate_reduce_scatter':
../../../util/osu_util_mpi.c:2039:17: error: switch quantity not an integer
2039 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:2040:13: error: pointers are not permitted as case values
2040 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:2046:13: error: pointers are not permitted as case values
2046 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c:2052:13: error: pointers are not permitted as case values
2052 | case MPI_FLOAT:
| ^~~~
make[4]: *** [Makefile:582: ../../../util/osu_util_mpi.o] Error 1
make[4]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt/standard'
make[3]: *** [Makefile:353: all-recursive] Error 1
make[3]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt'
make[2]: *** [Makefile:354: all-recursive] Error 1
make[2]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c/mpi'
make[1]: *** [Makefile:428: all-recursive] Error 1
make[1]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c'
make: *** [Makefile:382: all-recursive] Error 1
Making install in c
make[1]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c'
Making install in mpi
make[2]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c/mpi'
Making install in pt2pt
make[3]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt'
Making install in standard
make[4]: Entering directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt/standard'
depbase=`echo ../../../util/osu_util_mpi.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
mpicc -DPACKAGE_NAME=\"OSU-Micro-Benchmarks\" -DPACKAGE_TARNAME=\"osu-micro-benchmarks\" -DPACKAGE_VERSION=\"7.1\" -DPACKAGE_STRING=\"OSU-Micro-Benchmarks\ 7.1\" -DPACKAGE_BUGREPORT=\"mvapich-discuss at cse.ohio-state.edu\<mailto:mvapich-discuss at cse.ohio-state.edu\>" -DPACKAGE_URL=\"\" -DPACKAGE=\"osu-micro-benchmarks\" -DVERSION=\"7.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_MATH_H=1 -DHAVE_GETPAGESIZE=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_SQRT=1 -DFIELD_WIDTH=18 -DFLOAT_PRECISION=2 -I. -I../../../../c/util -g -O2 -MT ../../../util/osu_util_mpi.o -MD -MP -MF $depbase.Tpo -c -o ../../../util/osu_util_mpi.o ../../../util/osu_util_mpi.c &&\
mv -f $depbase.Tpo $depbase.Po
../../../util/osu_util_mpi.c: In function 'omb_assign_to_type':
../../../util/osu_util_mpi.c:1411:13: error: switch quantity not an integer
1411 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:1412:9: error: pointers are not permitted as case values
1412 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:1416:9: error: pointers are not permitted as case values
1416 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c:1419:9: error: pointers are not permitted as case values
1419 | case MPI_FLOAT:
| ^~~~
../../../util/osu_util_mpi.c: In function 'omb_get_num_elements':
../../../util/osu_util_mpi.c:1430:13: error: switch quantity not an integer
1430 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:1431:9: error: pointers are not permitted as case values
1431 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:1434:9: error: pointers are not permitted as case values
1434 | case MPI_FLOAT:
| ^~~~
../../../util/osu_util_mpi.c:1437:9: error: pointers are not permitted as case values
1437 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c: In function 'omb_validate_neighbour_col':
../../../util/osu_util_mpi.c:1970:21: error: switch quantity not an integer
1970 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:1971:17: error: pointers are not permitted as case values
1971 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:1980:17: error: pointers are not permitted as case values
1980 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c:1988:17: error: pointers are not permitted as case values
1988 | case MPI_FLOAT:
| ^~~~
../../../util/osu_util_mpi.c: In function 'validate_reduce_scatter':
../../../util/osu_util_mpi.c:2039:17: error: switch quantity not an integer
2039 | switch (dtype) {
| ^~~~~
../../../util/osu_util_mpi.c:2040:13: error: pointers are not permitted as case values
2040 | case MPI_CHAR:
| ^~~~
../../../util/osu_util_mpi.c:2046:13: error: pointers are not permitted as case values
2046 | case MPI_INT:
| ^~~~
../../../util/osu_util_mpi.c:2052:13: error: pointers are not permitted as case values
2052 | case MPI_FLOAT:
| ^~~~
make[4]: *** [Makefile:582: ../../../util/osu_util_mpi.o] Error 1
make[4]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt/standard'
make[3]: *** [Makefile:353: install-recursive] Error 1
make[3]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c/mpi/pt2pt'
make[2]: *** [Makefile:354: install-recursive] Error 1
make[2]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c/mpi'
make[1]: *** [Makefile:428: install-recursive] Error 1
make[1]: Leaving directory '/tmp/osu-micro-benchmarks-7.1/c'
make: *** [Makefile:382: install-recursive] Error 1
/.post.script: line 50: cd: /opt/omb/7.1: No such file or directory
mv: cannot stat 'libexec/osu-micro-benchmarks/mpi/collective': No such file or directory
mv: cannot stat 'libexec/osu-micro-benchmarks/mpi/one-sided': No such file or directory
mv: cannot stat 'libexec/osu-micro-benchmarks/mpi/pt2pt': No such file or directory
mv: cannot stat 'libexec/osu-micro-benchmarks/mpi/startup': No such file or directory
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
INFO: Adding labels
INFO: Adding environment to container
INFO: Adding runscript
INFO: Creating SIF file...
INFO: Build complete: omb-7.1-ubuntu-22.04-openmpi-4.1.3.sif
ubuntu at mkandes-container-builder:~/naked-singularity/definition-files/omb$
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.osu.edu/pipermail/mvapich-discuss/attachments/20230621/63640423/attachment-0005.html>
More information about the Mvapich-discuss
mailing list