[Mvapich-discuss] Build Failure with NVHPC 23.3
Louise Spellacy
louise.spellacy at linaro.org
Fri Jun 9 08:56:16 EDT 2023
Hi Nat,
I think the patch you provided works for the rdynamic fix but not for the
Fortran 2008 issue.
I needed to report the issue to MPICH also and it was resolved by adding a
call to CFI_is_contiguous as part of the F08 support check.
This should fail to link if it's not supported.
See
https://urldefense.com/v3/__https://github.com/pmodels/mpich/pull/6537/commits/0cc7d58b1cb18b2573c74e16ba159487de0899d2__;!!KGKeukY!2Wpwex0uFIT7DiwcKRaUjPikuhUEq9iclL1xZvqe6lbbzWbWE_0RQufnjsAUBk4lHbXLXWAErk-fyey6LOBqBM2tKkITPYvfiW8Bzg$
Thanks,
Louise
On Wed, 17 May 2023 at 15:00, Louise Spellacy <louise.spellacy at linaro.org>
wrote:
> Hi Sylvain,
>
> I forced it with a patch to the configure file - but I wouldn't recommend
> it as a long term fix:
>
> --- a/mvapich2-2.3.7/configure
>> +++ b/mvapich2-2.3.7/configure
>> @@ -34260,7 +34260,7 @@ ac_compile='$F77 -c $FFLAGS conftest.$ac_ext >&5'
>> ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext
>> $LIBS >&5'
>> ac_compiler_gnu=$ac_cv_f77_compiler_gnu
>>
>> -
>> +f08_works=no
>> if test "$f08_works" = "yes" ; then
>> f08_works=yes
>>
> else
>
>
> This was the only way I could get mpif90 to work.
>
> Thanks,
> Louise
>
> On Mon, 15 May 2023 at 15:29, Korzennik, Sylvain <
> skorzennik at cfa.harvard.edu> wrote:
>
>> Thx Louise. I hadn't yet check the build. How did you disable have f08 in
>> the config script?
>>
>> Cheers,
>> Sylvain
>> ---
>>
>> On Mon, May 15, 2023, 10:12 AM Louise Spellacy <
>> louise.spellacy at linaro.org> wrote:
>>
>>> Hi All,
>>>
>>> The above patch solves the -rdynamic issue but doesn't resolve the
>>> Fortran 2008 isuse.
>>>
>>> With the above patch, mvapich2 is still being configured
>>> with HAVE_F08_BINDING set to 1. The configure and make steps now work but
>>> mpif90 now has a undefined reference:
>>>
>>>> mpif90 -g -o test test.f90
>>>> /home/user/install/mvapich2-install/lib/libmpifort.so: undefined
>>>> reference to `CFI_is_contiguous'
>>>
>>>
>>> Forcibly changing the configure script to set this to zero results in a
>>> usable mpif90.
>>>
>>> Thanks,
>>>
>>> Louise
>>>
>>>
>>> On Fri, 12 May 2023 at 16:37, Korzennik, Sylvain <
>>> skorzennik at cfa.harvard.edu> wrote:
>>>
>>>> Same here:
>>>> 1- I could not run patch on the file you supplied, but edited the files
>>>> directly (am I missing something?)
>>>> 2- I get the same "'aclocal-1.15' is missing on your system." err mgs
>>>>
>>>> So I reverted to the original .m4 & .mk, removed the -rdynamic flags
>>>> from the top Makefile after running configure and was able to build mvapich2-2.3.7
>>>> w/ nvidia 23.3 compilers.
>>>> I have yet to check that all runs fine, tho.
>>>>
>>>> Also, I had to downgrade the optimization to -O1 (instead of -O4 or
>>>> -O2) since I was getting
>>>>
>>>>> NVC++-F-0007-Source file too large to compile at this optimization
>>>>> level (src/mpi/coll/allreduce_tuning.c)
>>>>> NVC++/x86-64 Linux 22.9-0: compilation aborted
>>>>
>>>> that I assume is an issue w/ the NVIDIA compilers (aargh) that seems
>>>> to has creeped up since ver 22.9 (ver 22.3 was happy w/ -O4).
>>>>
>>>> Cheers,
>>>> Sylvain
>>>> --
>>>>
>>>>
>>>>
>>>> On Fri, May 12, 2023 at 9:41 AM Louise Spellacy <
>>>> louise.spellacy at linaro.org> wrote:
>>>>
>>>>> Thanks Nat,
>>>>>
>>>>> I took the patch and applied it to the mvapich2-2.3.7.tar.gz but it
>>>>> now requires that aclocal and automake be installed on the system:
>>>>>
>>>>> CDPATH="${ZSH_VERSION+.}:" && cd mvapich2-2.3.7 && /bin/bash
>>>>>> confdb/missing aclocal-1.15 -I confdb
>>>>>> confdb/missing: line 81: aclocal-1.15: command not found
>>>>>> WARNING: 'aclocal-1.15' is missing on your system.
>>>>>
>>>>>
>>>>> and
>>>>>
>>>>> cd mvapich2-2.3.7 && /bin/bash confdb/missing automake-1.15 --foreign
>>>>>> Makefile
>>>>>> confdb/missing: line 81: automake-1.15: command not found
>>>>>> WARNING: 'automake-1.15' is missing on your system.
>>>>>
>>>>>
>>>>> Because the subconfigure.m4 and Makefile.mk files are changed, a new
>>>>> configure and Makefile.in file need to be generated. Would it be possible
>>>>> to include a patch with the changes to configure and Makefile.in instead of
>>>>> the m4 and Makefile.mk file? I know long term they will need to be merged
>>>>> as changes to the subconfigure.m4 and Makefile.mk but for testing purposes
>>>>> they won't work with the tar ball.
>>>>>
>>>>> Thanks,
>>>>>
>>>>> Louise
>>>>>
>>>>> On Thu, 11 May 2023 at 17:12, Korzennik, Sylvain <
>>>>> skorzennik at cfa.harvard.edu> wrote:
>>>>>
>>>>>> Hi Nat,
>>>>>>
>>>>>> Thanks for getting back to us. Shall I apply it to mvapich2-2.3.7
>>>>>> or mvapich2-2.3.7-1?
>>>>>>
>>>>>> Cheers,
>>>>>> Sylvain
>>>>>> --
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Thu, May 11, 2023 at 11:02 AM Shineman, Nat <shineman.5 at osu.edu>
>>>>>> wrote:
>>>>>>
>>>>>>> Louise and Sylvain,
>>>>>>>
>>>>>>> Please try the attached patch to resolve both the real128 and the
>>>>>>> rdynamic issues. Let me know if you have any issues.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Nat
>>>>>>> ------------------------------
>>>>>>> *From:* Mvapich-discuss <mvapich-discuss-bounces at lists.osu.edu> on
>>>>>>> behalf of Subramoni, Hari via Mvapich-discuss <
>>>>>>> mvapich-discuss at lists.osu.edu>
>>>>>>> *Sent:* Friday, May 5, 2023 11:23
>>>>>>> *To:* Korzennik, Sylvain <skorzennik at cfa.harvard.edu>; Announcement
>>>>>>> about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA)
>>>>>>> Libraries developed at NBCL/OSU <mvapich-discuss at lists.osu.edu>;
>>>>>>> Louise Spellacy <louise.spellacy at linaro.org>
>>>>>>> *Subject:* Re: [Mvapich-discuss] Build Failure with NVHPC 23.3
>>>>>>>
>>>>>>>
>>>>>>> Hi, Sylvain/Louise.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Thanks for the report. We will take a look at this and get back to
>>>>>>> you soon.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Best,
>>>>>>> Hari.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> *From:* Mvapich-discuss <mvapich-discuss-bounces+subramon=
>>>>>>> cse.ohio-state.edu at lists.osu.edu> *On Behalf Of *Korzennik, Sylvain
>>>>>>> via Mvapich-discuss
>>>>>>> *Sent:* Friday, May 5, 2023 11:20 AM
>>>>>>> *To:* Louise Spellacy <louise.spellacy at linaro.org>; Announcement
>>>>>>> about MVAPICH2 (MPI over InfiniBand, RoCE, Omni-Path, iWARP and EFA)
>>>>>>> Libraries developed at NBCL/OSU <mvapich-discuss at lists.osu.edu>
>>>>>>> *Subject:* Re: [Mvapich-discuss] Build Failure with NVHPC 23.3
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> I ran into the exact same problem - unclear to me why config w/
>>>>>>> NVIDIA 23. x turns on "supports fortran 2008" and then fails miserably,
>>>>>>> while NVIDIA 22. x compilers did not. Also, the config adds -rdynamic that
>>>>>>> is not supported by NVIDIA's
>>>>>>>
>>>>>>> I ran into the exact same problem - unclear to me why config w/
>>>>>>> NVIDIA 23.x turns on "supports fortran 2008" and then fails miserably,
>>>>>>> while NVIDIA 22.x compilers did not.
>>>>>>>
>>>>>>> Also, the config adds -rdynamic that is not supported by NVIDIA's
>>>>>>> compilers.
>>>>>>>
>>>>>>> Cheers,
>>>>>>> Sylvain
>>>>>>> --
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Fri, May 5, 2023 at 11:14 AM Louise Spellacy via Mvapich-discuss <
>>>>>>> mvapich-discuss at lists.osu.edu> wrote:
>>>>>>>
>>>>>>> Hi, I am building MVAPICH2 2. 3. 7 with NVHPC 23. 3 which is
>>>>>>> encountering a build error. The configure script runs successfully but when
>>>>>>> building with make I get the following error: make -j 8 MOD
>>>>>>> src/binding/fortran/use_mpi_f08/mpi_f08_types.
>>>>>>> stampNVFORTRAN-S-0081-Illegal
>>>>>>>
>>>>>>> Hi,
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> I am building MVAPICH2 2.3.7 with NVHPC 23.3 which is encountering a
>>>>>>> build error.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> The configure script runs successfully but when building with make
>>>>>>> I get the following error:
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> make -j 8
>>>>>>> MOD src/binding/fortran/use_mpi_f08/mpi_f08_types.stamp
>>>>>>> NVFORTRAN-S-0081-Illegal selector - KIND value must be non-negative
>>>>>>> (../mvapich2-2.3.7/src/binding/fortran/use_mpi_f08/mpi_f08_types.f90: 355)
>>>>>>> 0 inform, 0 warnings, 1 severes, 0 fatal for
>>>>>>> mpi_sizeof_xreal128
>>>>>>> NVFORTRAN-S-0081-Illegal selector - KIND value must be non-negative
>>>>>>> (../mvapich2-2.3.7/src/binding/fortran/use_mpi_f08/mpi_f08_types.f90: 385)
>>>>>>> 0 inform, 0 warnings, 1 severes, 0 fatal for
>>>>>>> mpi_sizeof_xcomplex128
>>>>>>> make: *** [Makefile:45401:
>>>>>>> src/binding/fortran/use_mpi_f08/mpi_f08_types.stamp] Error 1
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> These lines refer to code using real128 datatypes.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> When I compared the status of the configure, with a previously
>>>>>>> successful build with NVHPC 22.5 - the HAVE_F08_BINDING is set to 1 (with
>>>>>>> 23.3) not 0 (with 22.5).
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> I attempted to work around this by setting --enable-fortran=f77 but
>>>>>>> this removes the mpif90 compiler so this wasn't a viable work-around.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Is there a way of enabling f90 support without explicitly enabling
>>>>>>> f08 support? The only option I could see was --enable-fortran=fc which
>>>>>>> enables both.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Or adding a check for real128 support to the configure script for
>>>>>>> Fortran 2008 support checking?
>>>>>>>
>>>>>>>
>>>>>>> All the best,
>>>>>>>
>>>>>>> Louise
>>>>>>>
>>>>>>> --------
>>>>>>>
>>>>>>> *Louise Spellacy*
>>>>>>> Principal Engineer
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> https://urldefense.com/v3/__http://www.linaroforge.com__;!!KGKeukY!2Wpwex0uFIT7DiwcKRaUjPikuhUEq9iclL1xZvqe6lbbzWbWE_0RQufnjsAUBk4lHbXLXWAErk-fyey6LOBqBM2tKkITPYu7e4byMw$
>>>>>>> <https://urldefense.com/v3/__http:/www.linaroforge.com/__;!!KGKeukY!3iNLn14b76jc9LvUWa_ex-6vU1H2l0eOVemLx4Ifpj9f27VMFsusddvwZOz1dFkdJDARoTJq5Q-WqB_Eq39J_cZ2AhNmp4Tl0oJ8Iw$>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> [image: Image removed by sender.]
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Mvapich-discuss mailing list
>>>>>>> Mvapich-discuss at lists.osu.edu
>>>>>>> https://lists.osu.edu/mailman/listinfo/mvapich-discuss
>>>>>>>
>>>>>>>
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