[Mvapich-discuss] [mvapich-discuss] MVAPICH2 2.3.5 and HDF5 1.10.7 parallel tests

[Mark Dixon]

Hi there,

Just wondering if anyone had found the time to run my script and see the 
same issue with parallel HDF5 that I do, please?

Regards,

Mark

On Tue, 15 Dec 2020, Mark Dixon wrote:

> Hi Hari,
>
> Thanks for replying. Just tried it out on an x86 box with Truescale IB, 
> running centos7.8 - same result.
>
> This time, files were on an ext4 filesystem and no lustre was available (so 
> compiled with "--enable-romio --with-file-system=ufs")
>
> Best,
>
> Mark
>
> On Tue, 15 Dec 2020, Subramoni, Hari wrote:
>
>>
>>  [EXTERNAL EMAIL] Do not open links or attachments unless you recognise the
>>  sender and know the content is safe. Otherwise, use the Report Message
>>  button or report to phishing at durham.ac.uk<"mailto:phishing at durham.ac.uk>.
>>
>>  Hi, Mark.
>>
>>  Sorry to hear that you're facing issues.
>>
>>  Can you please let us know if the is issue particular to POWER9 + Lustre +
>>  UFS combination or does it happen on x86 systems as well?
>>
>>  We will try out the steps you've mentioned locally and see if we are able
>>  to reproduce it.
>>
>>  Thx,,
>>  Hari.
>>
>>  -----Original Message-----
>>  From: mvapich-discuss-bounces at cse.ohio-state.edu
>>  <mvapich-discuss-bounces at mailman.cse.ohio-state.edu> On Behalf Of Mark
>>  Dixon
>>  Sent: Tuesday, December 15, 2020 12:11 PM
>>  To: mvapich-discuss at cse.ohio-state.edu
>>  <mvapich-discuss at mailman.cse.ohio-state.edu>
>>  Subject: [mvapich-discuss] MVAPICH2 2.3.5 and HDF5 1.10.7 parallel tests
>>
>>  Hi there,
>>
>>  I'm having trouble getting HDF5's parallel tests to pass when built on top
>>  of MVAPICH2. I was wondering if anyone else is seeing this, please?
>>
>>  For reference (not sure it's relevant), I had similar trouble with the
>>  version of ROMIO bundled inside OpenMPI
>>  (https://urldefense.com/v3/__https://github.com/open-mpi/ompi/issues/6871__;!!KGKeukY!nWOQssfAxiSnSZJJ7bf62O6vhk438EzOmw7yXziKQ3niAaJZUYlmw-6k6nKp0Si8pwjiqKIs-3I4CJc$
>>  )
>>
>>  Thanks,
>>
>>  Mark
>> 
>>
>>  #!/bin/bash
>> 
>> #  We have run this on an IBM POWER9 rhel7.6-alt system with MOFED 4.7. The 
>> #  # hdf5 test "testphdf5" does not complete until it is terminated by (in 
>> #  # this case) a 1 hour alarm timeout.
>> # 
>> #  The last lines that the test printed was 6 copies of this:
>> # 
>> # Testing  -- multi-chunk collective chunk io (cchunk3) # # This has been 
>> # run from a location on an xfs filesystem, and # on a lustre filesystem, 
>> # with the same result.
>>
>>  set -x
>>  set -e
>>
>>  # (needed on our system to ensure we are using the OS-provided # version
>>  of GCC, etc.) module purge || true
>>
>>  test -d build || mkdir build
>>  test -d src || mkdir src
>>
>>  prefix=`pwd`/build
>>  export PATH=${prefix}/bin:$PATH
>>
>>  cd src
>> 
>>
>>  # mvapich2
>>
>>  wget
>>  https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.3.5.tar.gz
>>  tar xf mvapich2-2.3.5.tar.gz
>>  (
>>     cd mvapich2-2.3.5
>>
>>     ./configure --prefix=$prefix \
>>         --enable-romio \
>>         --with-file-system=lustre+ufs
>>
>>     make -j12
>>     make install
>> ) 
>> 
>>
>>  # hdf5
>>
>>  wget
>>  https://urldefense.com/v3/__https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz__;!!KGKeukY!nWOQssfAxiSnSZJJ7bf62O6vhk438EzOmw7yXziKQ3niAaJZUYlmw-6k6nKp0Si8pwjiqKIsvYU7Edc$
>>  tar xf hdf5-1.10.7.tar.gz
>>  (
>>     cd hdf5-1.10.7
>>
>>     export CC=mpicc
>>     export CXX=mpicxx
>>     export FC=mpif90
>>     export F77=mpif77
>>     export F90=mpif90
>>
>>     export HDF5_ALARM_SECONDS=3600
>>
>>     ./configure --prefix=$prefix --enable-parallel
>>     make -j12
>>     make check
>>     make install
>> ) 
>>
>>  _______________________________________________
>>  mvapich-discuss mailing list
>>  mvapich-discuss at cse.ohio-state.edu
>>  http://mailman.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>> 
>