[mvapich-discuss] Benchmark results

admin at genome.arizona.edu admin at genome.arizona.edu
Wed Jan 24 19:07:11 EST 2018


I tried running some of the benchmarks and was getting speeds much 
faster than our network (40Gb infiniband), for example osu_put_bw was 
reporting speeds over 10,000 MB/s.... so I just wanted to verify things 
were working correctly.  The hostfile is configured like this:

n001:1
n002:1

On n001 i used the command "watch -d -n 1 perfquery -x" in order to 
monitor the infiniband bandwidth, and it didn't move very much, was 
expecting to see gigabytes of data.  The mpirun command was run from our 
headnode (pac).  The output below is from some of the tests.

I tried running some of the tests again with MPICH which wasn't 
configured to use infiniband and the reported speeds are similar... I 
would think the max bw for 1Gb ethernet would be around 125 MB/s.

   Why does the speed reported surpass the network's capability, and why 
don't I see more data reported by perfquery?

Thanks


$ mpirun -n 2 ./osu_mbw_mr
[1516836664.543562] [pac:19995:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516836664.551337] [pac:19994:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516836664.615265] [pac:19994:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
[1516836664.615341] [pac:19995:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
# OSU MPI Multiple Bandwidth / Message Rate Test v5.4.0
# [ pairs: 1 ] [ window size: 64 ]
# Size                  MB/s        Messages/s
1                       1.57        1568238.92
2                       3.47        1734415.30
4                      10.98        2744177.63
8                      22.03        2754031.56
16                     43.63        2726894.11
32                     87.33        2729112.00
64                    167.59        2618627.02
128                   317.88        2483443.94
256                   615.49        2404258.45
512                   991.41        1936344.63
1024                 2020.12        1972774.72
2048                 3648.01        1781257.17
4096                 5575.05        1361096.52
8192                 7640.54         932682.87
16384                8120.92         495661.61
32768                7306.94         222990.08
65536                6115.58          93316.27
131072               7068.91          53931.51
262144               6255.16          23861.54
524288               4799.04           9153.45
1048576              4149.86           3957.62
2097152              4241.41           2022.46
4194304              4421.88           1054.26

$ mpirun -n 2 ./osu_bibw
[1516836740.325164] [pac:20357:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516836740.326007] [pac:20356:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516836740.375677] [pac:20357:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
[1516836740.375846] [pac:20356:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
# OSU MPI Bi-Directional Bandwidth Test v5.4.0
# Size      Bandwidth (MB/s)
1                       1.87
2                       6.12
4                      13.12
8                      26.15
16                     52.54
32                    103.86
64                    192.62
128                   375.00
256                   725.77
512                  1356.62
1024                 2454.05
2048                 3824.12
4096                 5817.68
8192                 7810.70
16384                8115.97
32768                7596.26
65536                5697.60
131072               6471.82
262144               5800.20
524288               6305.01
1048576              7838.19
2097152              4161.10
4194304              4180.82

$ mpirun -n 2 ./osu_put_bw
[1516837452.743091] [pac:23619:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516837452.743084] [pac:23620:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516837454.525230] [pac:23620:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
[1516837454.846800] [pac:23619:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
# OSU MPI_Put Bandwidth Test v5.4.0
# Window creation: MPI_Win_allocate
# Synchronization: MPI_Win_flush
# Size      Bandwidth (MB/s)
1                      23.88
2                      46.52
4                      91.77
8                     170.57
16                    297.64
32                    564.01
64                   1128.03
128                  2150.17
256                  4035.20
512                  5799.11
1024                 7603.81
2048                10214.71
4096                10141.23
8192                 7411.61
16384               10592.60
32768               10640.01
65536               10043.78
131072               4290.18
262144               4808.87
524288               4469.42
1048576              3548.38
2097152              3009.57
4194304              2755.88

$ mpirun -n 2 ./osu_latency_mt
[1516836724.398940] [pac:20275:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516836724.398949] [pac:20276:0]         sys.c:744  MXM  WARN 
Conflicting CPU frequencies detected, using: 2101.00
[1516836724.459278] [pac:20276:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
[1516836724.459351] [pac:20275:0]    proto_ep.c:179  MXM  WARN  tl dc is 
requested but not supported
# OSU MPI Multi-threaded Latency Test v5.4.0
# Size          Latency (us)
0                       4.95
1                       5.56
2                       5.55
4                       5.56
8                       5.52
16                      5.62
32                      5.97
64                      5.88
128                     6.35
256                     6.34
512                     6.47
1024                    6.57
2048                    5.12
4096                    5.36
8192                   10.59
16384                  14.14
32768                  23.21
65536                  21.84
131072                 32.38
262144                 56.23
524288                118.70
1048576               264.23
2097152               520.68
4194304              1015.48


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