[mvapich-discuss] malloc_consolidate failure in mvapich2-2.1

Sashi Balasingam sashibala2 at yahoo.com
Tue Sep 1 02:22:48 EDT 2015


 Hi All:We have a subsystem where the host communicates with the client system using Omni-ORB (...a CORBA implementation). The client system is running an mvapich2-2.1 application, with Corba server in it. During one of the calls from host to client, we are seeing a hang-up in that call execution. 
>From gdb, we find the following stack trace, which seems to indicate a failure with the 'malloc_consolidate' method, used thru the mvapich library.
The client system runs SuSe Linux 11, SP3, Infiniband HCA, mvapich2-2.1, and we are using gcc 4.8.3 for code build, which was used to compile all libraries (mvapich, Omni-Orb), and our mpi application. 
STACK (gdb) #0  0x00007fbc9ea15ca5 in malloc_consolidate () from /usr/mpi/gcc/mvapich2-2.1/lib/libmpi.so.12
(gdb) #1  0x00007fbc9ea16fa0 in _int_malloc () from /usr/mpi/gcc/mvapich2-2.1/lib/libmpi.so.12
(gdb) #2  0x00007fbc9ea17e0a in malloc () from /usr/mpi/gcc/mvapich2-2.1/lib/libmpi.so.12
(gdb) #3  0x00007fbc9e41908d in operator new(unsigned long) () from /usr/lib64/libstdc++.so.6
(gdb) #4  0x00007fbc9e419189 in operator new[](unsigned long) () from /usr/lib64/libstdc++.so.6
(gdb) #5  0x00007fbc9fa580ea in omni::omniCodeSet::TCS_C_8bit::fastUnmarshalString(cdrStream&, omni::omniCodeSet::NCS_C*, unsigned int, unsigned int&, char*&) () from /root/m31/blazer/nIMC/Exec/ThirdParty/libomniORB4.so.2
(gdb) #6  0x00007fbc9fa5839a in omni::omniCodeSet::NCS_C_8bit::unmarshalString(cdrStream&, omni::omniCodeSet::TCS_C*, unsigned int, char*&) () from /root/m31/blazer/nIMC/Exec/ThirdParty/libomniORB4.so.2
(gdb) #7  0x00007fbc9efc30c0 in unmarshalString (bounded=0, this=0x1485298) at /usr/local/include/omniORB4/cdrStream.h:462
(gdb) #8  _0RL_cd_e5de0fd0b13285ea_d0000000::unmarshalArguments (this=0x7fbc94535660, _n=...)(gdb)     at ../../../../IMCBridge/Src/IDLGen/nIMC/Linux/EverestInterface.omni.cpp:1101

Any suggestion on potential cause or workarounds would be much appreciated.
Thanks,Sashi
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