[mvapich-discuss] mvapich2-GDR-2.0b installation problems
Jonathan Perkins
perkinjo at cse.ohio-state.edu
Fri Jan 24 12:35:42 EST 2014
To be honest I'm not sure. I see this problem sometimes when the
"missing" libraries are not installed by an RPM or are in a non-system
path but it appears that one of the libraries that RPM complained
about was in the system path.
Good to know that the installation is working for you. Please do let
us know if you encounter any further issues.
On Fri, Jan 24, 2014 at 2:52 AM, Mohamad Amirul Abdullah
<amirul.abdullah at mimos.my> wrote:
> Thanks Jonathans, now can compile and run succesfully (but in one machine, next will try for multiple node in different machine).
> But i still wonder why im getting that error before.
>
> Regards,
> Amirul
>
> -----Original Message-----
> From: Jonathan Perkins [mailto:perkinjo at cse.ohio-state.edu]
> Sent: 24 Januari 2014 12:12
> To: Mohamad Amirul Abdullah
> Cc: Jonathan Perkins; mvapich-discuss at cse.ohio-state.edu; Yong Keh Kok
> Subject: Re: [mvapich-discuss] mvapich2-GDR-2.0b installation problems
>
> You can find the installation under /opt/mvapich2/gdr/2.0/gnu.
>
> On Thu, Jan 23, 2014 at 11:03 PM, Mohamad Amirul Abdullah <amirul.abdullah at mimos.my> wrote:
>> After i run with --nodeps, only this came out.
>>
>> [gpu0 at gpu0 Downloads]$ sudo rpm --replacepkgs --nodeps -Uvh mvapich2-gdr-2.0b-3.rhel6.rpm
>> Preparing... ########################################### [100%]
>> 1:mvapich2-gdr-gnu ########################################### [100%]
>> [gpu0 at gpu0 Downloads]$
>>
>> after that nothing happen. how can i verify the installation work?.. i
>> cant see mpicc for mvapich 2.0
>>
>> notes: i did found mvapich2-1.9 installed at
>> /usr/mpi/gcc/mvapich2-1.9, but i was
>>
>> Regards,
>> -Amirul-
>>
>>
>> ________________________________________
>> From: Jonathan Perkins [perkinjo at cse.ohio-state.edu]
>> Sent: Friday, January 24, 2014 11:56 AM
>> To: Mohamad Amirul Abdullah
>> Cc: mvapich-discuss at cse.ohio-state.edu; Yong Keh Kok
>> Subject: Re: [mvapich-discuss] mvapich2-GDR-2.0b installation problems
>>
>> There seems to be a discrepancy between what `rpm' and `locate' is
>> reporting. If you're sure that the cached results from `locate' are
>> correct you can try adding the --nodeps option to rpm and see if the
>> package works correctly for you. Please let us know if this helps.
>>
>> On Thu, Jan 23, 2014 at 9:29 PM, Mohamad Amirul Abdullah
>> <amirul.abdullah at mimos.my> wrote:
>>> Hi,
>>>
>>> I'm having problem to install the new release mvapich2-GDR-2.0b.
>>> Everytime i ran the mvapich2-gdr-gnu-2.0-3.el6.x86_64 it says it cant find libcuda.so.1:
>>>
>>> [gpu0 at gpu0 Downloads]$ rpm -Uvh ./mvapich2-gdr-2.0b-3.rhel6.rpm
>>> error: Failed dependencies:
>>> libcuda.so.1()(64bit) is needed by mvapich2-gdr-gnu-2.0-3.el6.x86_64
>>> libcudart.so.5.5()(64bit) is needed by
>>> mvapich2-gdr-gnu-2.0-3.el6.x86_64
>>>
>>> here is my configuration:
>>>
>>> OS: CENTOS 6.4
>>> [gpu0 at gpu0 Downloads]$ uname -a
>>> Linux gpu0 2.6.32-358.el6.x86_64 #1 SMP Fri Feb 22 00:31:26 UTC 2013
>>> x86_64
>>> x86_64 x86_64 GNU/Linux
>>>
>>> NVIDIA SMI
>>> [gpu0 at gpu0 Downloads]$ nvidia-smi
>>> Fri Jan 24 10:15:20 2014
>>> +------------------------------------------------------+
>>> | NVIDIA-SMI 331.20 Driver Version: 331.20 |
>>> |-------------------------------+----------------------+----------------------+
>>> | GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr.
>>> ECC |
>>> | Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute
>>> M. |
>>> |===============================+======================+======================|
>>> | 0 GeForce 9300 GE Off | 0000:03:00.0 N/A |
>>> N/A |
>>> | 40% 68C N/A N/A / N/A | 63MiB / 255MiB | N/A
>>> Default |
>>> +-------------------------------+----------------------+----------------------+
>>> | 1 Tesla K20c Off | 0000:04:00.0 Off |
>>> 0 |
>>> | 30% 39C P8 26W / 225W | 10MiB / 4799MiB | 0%
>>> Default |
>>> +-------------------------------+----------------------+----------------------+
>>>
>>> Mellanox
>>> [gpu0 at gpu0 Downloads]$ lspci | grep Mellanox
>>> 23:00.0 Network controller: Mellanox Technologies MT27500 Family
>>> [ConnectX-3]
>>>
>>> ENVIRONMENT PATH
>>> [gpu0 at gpu0 Downloads]$ echo $LD_LIBRARY_PATH
>>> /usr/local/cuda/lib64:/usr/lib64
>>> [gpu0 at gpu0 Downloads]$ echo $PATH
>>> /usr/local/cuda/bin:/usr/local/cuda/include:/usr/lib64/qt-3.3/bin:/us
>>> r/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutil
>>> s/bin:/home/gpu0/bin
>>>
>>> libcuda and libcudart path
>>> [gpu0 at gpu0 Downloads]$ locate libcuda libcudart /usr/lib/libcuda.so
>>> /usr/lib/libcuda.so.1
>>> /usr/lib/libcuda.so.331.20
>>> /usr/lib64/libcuda.so
>>> /usr/lib64/libcuda.so.1
>>> /usr/lib64/libcuda.so.331.20
>>> /usr/local/cuda-5.5/lib/libcudadevrt.a
>>> /usr/local/cuda-5.5/lib/libcudart.so
>>> /usr/local/cuda-5.5/lib/libcudart.so.5.5
>>> /usr/local/cuda-5.5/lib/libcudart.so.5.5.22
>>> /usr/local/cuda-5.5/lib/libcudart_static.a
>>> /usr/local/cuda-5.5/lib64/libcudadevrt.a
>>> /usr/local/cuda-5.5/lib64/libcudart.so
>>> /usr/local/cuda-5.5/lib64/libcudart.so.5.5
>>> /usr/local/cuda-5.5/lib64/libcudart.so.5.5.22
>>> /usr/local/cuda-5.5/lib64/libcudart_static.a
>>> /usr/local/cuda-5.5/libnsight/configuration/org.eclipse.osgi/bundles/
>>> 11/1/.cp/so/linux/x86_64/libcudautil.so
>>>
>>> please advice
>>>
>>> Regards,
>>> -Amirul-
>>>
>>>
>>> _______________________________________________
>>> mvapich-discuss mailing list
>>> mvapich-discuss at cse.ohio-state.edu
>>> http://mailman.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>>
>>
>>
>>
>> --
>> Jonathan Perkins
>> http://www.cse.ohio-state.edu/~perkinjo
>>
>>
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>
>
>
> --
> Jonathan Perkins
> http://www.cse.ohio-state.edu/~perkinjo
>
>
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> This e-mail (including any attachments) is for the addressee(s)
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> MIMOS Berhad is a research and development institution under
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> Innovation. Opinions, conclusions and other information in this e-
> mail that do not relate to the official business of MIMOS Berhad
> and/or its subsidiaries shall be understood as neither given nor
> endorsed by MIMOS Berhad and/or its subsidiaries and neither
> MIMOS Berhad nor its subsidiaries accepts responsibility for the
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--
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo
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