[mvapich-discuss] PMGR_COLLECTIVE ERROR

[Dhabaleswar Panda]

Thanks for your report. MVAPICH-1.2.0 is an ancient version and not 
supported any more. Please upgrade your system to the latest MVAPICH2 1.9 
version. Let us know if you see any issues with this latest version and we 
will be happy to extend help.

Thanks,

DK

On Wed, 26 Jun 2013, Andre Pattantyus wrote:

> Hello,
> 
> I am running a numerical dispersion model on a linux cluster with
> mvapich-1.2.0 and  pgi/10.2 compiler. I am trying to submit a job on 8
> processors with code written by the developer but I keep getting errors.
> Right now I am getting the following error when the executable hycm_std gets
> called:
> 
> /share/huina/akp4221/hysplit/trunk/exec/hycm_std
> PMGR_COLLECTIVE ERROR: unitialized MPI task: Missing required environment
> variable: MPIRUN_RANK
> 
> 
> I think maybe my job submit command might not be adequate. Right now I am
> submitting via this piece of code:
> 
> #PBS -q default
> #PBS -N hysprun
> 
> # request X processes (X = nodes * cpus)
> #PBS -l nodes=1:ppn=8
> 
> # request wall time
> #PBS -l walltime=01:00:00
> 
> # PBS output files
> #PBS -o $PBS_JOBNAME.OUT
> #PBS -e $PBS_JOBNAME.ERR
> 
> echo "script running on host `hostname`"
> 
> # directory where qsub started
> cd   $PBS_O_WORKDIR
> echo "PBS_NODEFILE"
> #cat  $PBS_NODEFILE
> echo `pwd`
> 
> rm -f  MESSAGE.???
> 
> #-------------------------------------------------------
> #  step2 - run the parallel or serial version of HYSPLIT
> 
> ${EXECprod}/hycm_std        >>step2.sh
> 
> I do not have root privileges but I would like to know what the potential
> issues I could be facing so I can let the administrator now. Mahalo!
> 
> 
> --
> Andre Pattantyus
> Graduate Student Research Assistant
> Department of Meteorology
> University of Hawaii at Manoa
> 2525 Correa Rd, HIG 350
> Honolulu, HI 96822
> Phone: (845) 264-3582
> 
>