[mvapich-discuss] mpirun: "bind: address family not supported by
protocol" "
Jonathan Perkins
perkinjo at cse.ohio-state.edu
Sat Feb 23 20:13:01 EST 2013
Hello Bernward. MVAPICH-1.2 is no longer supported. Can you try using
the latest stable MVAPICH2 release. I believe this issue has already
been resolved there.
https://mvapich.cse.ohio-state.edu/nightly/mvapich2/branches/1.8/mvapich2-latest.tar.gz
On Sat, Feb 23, 2013 at 10:05:31PM +0100, Bernward Platz wrote:
> Hi,
>
> in an infiniband-cluster when I execute
>
>
> mpirun_rsh -ssh -np <cpus> -hostfile hostfile <program>
>
> I always get a
>
> bind: Address family not supported by protocol
>
> I get the same error-message with all binaries also from the
> mvapich-test-suite.
>
> ssh is configured and tested correctly (no prompting for password or
> something else).
> I tried it with hostnames, ip-adresses, localhost. Always the same message.
>
> mpirun from openmpi is working fine.
>
> Platform: Linux x86_64
> OS: SLES 11p2 +
> mpvapich: mvapich from MLNX_OFED_LINUX-1.5.3-3.1.0-sles11sp2-x86_64
>
> Output of strace:
>
> execve("/usr/mpi/gcc/mvapich-1.2.0/bin/mpirun_rsh",
> ["/usr/mpi/gcc/mvapich-1.2.0/bin/m"..., "-ssh", "-np", "4", "-hostfile",
> "hostfile", "./osu_alltoall", "cd", "/CFD/fs1"], [/* 60 vars */]) = 0
> brk(0) = 0x613000
> mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
> 0x7f7aab703000
> access("/etc/ld.so.preload", R_OK) = -1 ENOENT (No such file or
> directory)
> open("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/tls/x86_64/libm.so.6",
> O_RDONLY) = -1 ENOENT (No such file or directory)
> stat("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/tls/x86_64", 0x7fff29e5edd0) =
> -1 ENOENT (No such file or directory)
> open("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/tls/libm.so.6", O_RDONLY) = -1
> ENOENT (No such file or directory)
> stat("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/tls", 0x7fff29e5edd0) = -1
> ENOENT (No such file or directory)
> open("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/x86_64/libm.so.6", O_RDONLY) =
> -1 ENOENT (No such file or directory)
> stat("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/x86_64", 0x7fff29e5edd0) = -1
> ENOENT (No such file or directory)
> open("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/libm.so.6", O_RDONLY) = -1
> ENOENT (No such file or directory)
> stat("/usr/mpi/gcc/mvapich-1.2.0/lib/shared", {st_mode=S_IFDIR|0755,
> st_size=4096, ...}) = 0
> open("/etc/ld.so.cache", O_RDONLY) = 3
> fstat(3, {st_mode=S_IFREG|0644, st_size=222401, ...}) = 0
> mmap(NULL, 222401, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7f7aab6cc000
> close(3) = 0
> open("/lib64/libm.so.6", O_RDONLY) = 3
> read(3,
> "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\200E\0\0\0\0\0\0"..., 832)
> = 832
> fstat(3, {st_mode=S_IFREG|0755, st_size=541821, ...}) = 0
> mmap(NULL, 2592072, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) =
> 0x7f7aab26d000
> fadvise64(3, 0, 2592072, POSIX_FADV_WILLNEED) = 0
> mprotect(0x7f7aab2c8000, 2093056, PROT_NONE) = 0
> mmap(0x7f7aab4c7000, 126976, PROT_READ|PROT_WRITE,
> MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x5a000) = 0x7f7aab4c7000
> close(3) = 0
> open("/usr/mpi/gcc/mvapich-1.2.0/lib/shared/libc.so.6", O_RDONLY) = -1
> ENOENT (No such file or directory)
> open("/lib64/libc.so.6", O_RDONLY) = 3
> read(3,
> "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P\355\1\0\0\0\0\0"..., 832)
> = 832
> fstat(3, {st_mode=S_IFREG|0755, st_size=1754140, ...}) = 0
> mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
> 0x7f7aab6cb000
> mmap(NULL, 3619016, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) =
> 0x7f7aaaef9000
> fadvise64(3, 0, 3619016, POSIX_FADV_WILLNEED) = 0
> mprotect(0x7f7aab064000, 2093056, PROT_NONE) = 0
> mmap(0x7f7aab263000, 20480, PROT_READ|PROT_WRITE,
> MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16a000) = 0x7f7aab263000
> mmap(0x7f7aab268000, 18632, PROT_READ|PROT_WRITE,
> MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f7aab268000
> close(3) = 0
> mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
> 0x7f7aab6ca000
> mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
> 0x7f7aab6c9000
> arch_prctl(ARCH_SET_FS, 0x7f7aab6ca700) = 0
> mprotect(0x7f7aab263000, 16384, PROT_READ) = 0
> mprotect(0x7f7aab4c7000, 4096, PROT_READ) = 0
> mprotect(0x610000, 4096, PROT_READ) = 0
> mprotect(0x7f7aab704000, 4096, PROT_READ) = 0
> munmap(0x7f7aab6cc000, 222401) = 0
> brk(0) = 0x613000
> brk(0x634000) = 0x634000
> access("/usr/mpi/gcc/mvapich-1.2.0/etc/mvapich.conf", R_OK) = 0
> open("/usr/mpi/gcc/mvapich-1.2.0/etc/mvapich.conf", O_RDONLY) = 3
> fstat(3, {st_mode=S_IFREG|0644, st_size=27877, ...}) = 0
> mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
> 0x7f7aab702000
> read(3, "#-------------------------------"..., 4096) = 4096
> read(3, "TAL_SIZE=9216\n# For a PCI Expres"..., 4096) = 4096
> read(3, "-------------------------\n# VIAD"..., 4096) = 4096
> read(3, "n\n#-----------------------------"..., 4096) = 4096
> read(3, "epost_depth + viadev_prepost_ren"..., 4096) = 4096
> read(3, "#\n# Default value: 1<<10\n# The t"..., 4096) = 4096
> read(3, "efault value: 1 (enabled)\n# This"..., 4096) = 3301
> read(3, "", 4096) = 0
> close(3) = 0
> munmap(0x7f7aab702000, 4096) = 0
> open("hostfile", O_RDONLY) = 3
> fstat(3, {st_mode=S_IFREG|0644, st_size=40, ...}) = 0
> mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
> 0x7f7aab702000
> read(3, "127.0.0.1\n127.0.0.1\n127.0.0.1\n12"..., 4096) = 40
> close(3) = 0
> munmap(0x7f7aab702000, 4096) = 0
> stat(".", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0
> stat("/usr/mpi/gcc/mvapich-1.2.0/tests/osu_benchmarks-3.1.1",
> {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0
> uname({sys="Linux", node="compute01", ...}) = 0
> socket(PF_INET, SOCK_STREAM, IPPROTO_TCP) = 3
> bind(3, {sa_family=0xf390 /* AF_??? */,
> sa_data="\0\0\0\0\0\0.UO\253z\177\0\0"}, 16) = -1 EAFNOSUPPORT (Address
> family not supported by protocol)
> dup(2) = 4
> fcntl(4, F_GETFL) = 0x8002 (flags O_RDWR|O_LARGEFILE)
> fstat(4, {st_mode=S_IFCHR|0620, st_rdev=makedev(136, 2), ...}) = 0
> mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
> 0x7f7aab702000
> lseek(4, 0, SEEK_CUR) = -1 ESPIPE (Illegal seek)
> write(4, "bind: Address family not support"..., 47bind: Address family not
> supported by protocol
> ) = 47
> close(4) = 0
> munmap(0x7f7aab702000, 4096) = 0
> exit_group(1)
>
> Thanks
>
> Bernward
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--
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo
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