[mvapich-discuss] Problem running Mvapich2 1.8 on Centos 6.3
Jonathan Perkins
perkinjo at cse.ohio-state.edu
Mon Jul 16 22:35:32 EDT 2012
Hi Craig,
Can you try adding --enable-g=dbg and --disable-fast to your configure
option. This should provide us more info to help debug the issue that
you're seeing.
On Mon, Jul 16, 2012 at 05:16:20PM -0600, Craig Tierney wrote:
> Hello,
>
> We are building up a new image and upgrading Mvapich2 to the latest, 1.8.
> When our image was Centos 6.2, I had no problems building and running basic
> MPI jobs. I built mvapich2 with:
>
> ./configure CC=icc CXX=icpc F77=ifort FC=ifort \
> LDFLAGS="-Wl,-rpath $INTEL/compiler/lib/intel64" \
> --prefix=/apps/mvapich2/1.8-intel \
> --with-rdma=gen2 \
> --with-ib-libpath=/usr/lib64 \
> --enable-romio=yes --with-file-system=lustre+panfs --enable-shared
>
> But since Centos 6.3 just came out, We updated the image with all available packages
> and tried again. I was no longer able to launch jobs. I rebuilt mvapich2
> to see if that would help. It didn't help.
>
> When I try to run a code, I get the following (full debug output below):
>
> [cli_0]: aborting job:
> Fatal error in MPI_Init:
> Other MPI error
>
> =====================================================================================
> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> = EXIT CODE: 256
> = CLEANING UP REMAINING PROCESSES
> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> =====================================================================================
> [cli_1]: aborting job:
> Fatal error in MPI_Init:
> Other MPI error
>
> =====================================================================================
> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> = EXIT CODE: 256
> = CLEANING UP REMAINING PROCESSES
> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> =====================================================================================
>
> Am I the first person to try this?
>
> Thanks,
> Craig
>
>
> ------------------
> Full HYDRA_DEBUG=1 output:
>
>
> host: h234
> host: h235
>
> ==================================================================================================
> mpiexec options:
> ----------------
> Base path: /apps/mvapich2/1.8-intel/bin/
> Launcher: (null)
> Debug level: 1
> Enable X: -1
>
> Global environment:
> -------------------
> USER=ctierney
> LOGNAME=ctierney
> HOME=/home/ctierney
>
> PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/bin/intel64:/home/ctierney/gmt/bin:/home/ctierney/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/esrl/bin:/opt/sge/default/bin/lx26-amd64:/apps/moab/default/bin:/apps/moab/default/sbin:/home/ctierney/GPU/trunk/GPU/bin:/apps/mvapich2/1.8-intel/bin
> MAIL=/var/spool/mail/ctierney
> SHELL=/bin/tcsh
> SSH_CLIENT=10.178.22.53 58254 22
> SSH_CONNECTION=10.178.22.53 58254 10.178.22.54 22
> SSH_TTY=/dev/pts/0
> TERM=xterm
> HOSTTYPE=x86_64-linux
> VENDOR=unknown
> OSTYPE=linux
> MACHTYPE=x86_64
> SHLVL=1
> PWD=/home/ctierney/OMB-3.1.1
> GROUP=jetmgmt
> HOST=h234
> REMOTEHOST=h233
> HOSTNAME=h234
>
> LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*
> .xcf=01;3
> 5:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
> G_BROKEN_FILENAMES=1
> LESSOPEN=|/usr/bin/lesspipe.sh %s
> MODULE_VERSION=3.2.9
> MODULE_VERSION_STACK=3.2.9
> MODULESHOME=/apps/Modules/3.2.9
>
> MODULEPATH=/apps/Modules/versions:/apps/Modules/$MODULE_VERSION/modulefiles:/apps/Modules/modulefiles:/apps/Modules/default/systemdefaults:/apps/Modules/default/compilers:/apps/Modules/default/systemtools:/apps/Modules/default/datatools:/apps/Modules/default/modulefamilies/intel:/apps/Modules/default/modulefamilies/intel-mvapich2
> LOADEDMODULES=sge:intel/12.1.4:mvapich2/1.8
> QTDIR=/usr/lib64/qt-3.3
> QTINC=/usr/lib64/qt-3.3/include
> QTLIB=/usr/lib64/qt-3.3/lib
>
> LD_LIBRARY_PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/lib/intel64:/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/compiler/lib/intel64:/opt/sge/default/lib/lx26-amd64
> MANPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/man/en_US:/usr/share/man:/opt/sge/default/man:/apps/moab/default/man
> MOAB=/apps/moab/default
> MOABHOMEDIR=/apps/moab/moabhome
> SGE_ROOT=/opt/sge/default
> _LMFILES_=/apps/Modules/default/systemdefaults/sge:/apps/Modules/default/compilers/intel/12.1.4:/apps/Modules/default/modulefamilies/intel/mvapich2/1.8
> GPUF2C=/home/ctierney/GPU/trunk/GPU
> GMT=/home/ctierney/gmt
> X509_USER_PROXY=/home/ctierney/.x509_user_proxy
> PERL5LIB=/home/ctierney/chron/lib:/home/ctierney/chron/lib/perl5/site_perl
> HPSS_PRINCIPAL=craig.tierney
> HPSS_KEYTAB_PATH=/home/ctierney/hpss/craig.tierney.keytab
> HPSS_SERVER_HOST=hpsscore1.fairmont.rdhpcs.noaa.gov
> HPSS_PFTPC_PORT_RANGE=ncacn_ip_tcp[38000-38999]
> HPSS_HOSTNAME=h234.boulder.rdhpcs.noaa.gov
> HPSS_CFG_FILE_PATH=/home/ctierney
> CPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/include
> FPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/includelp64
> INCLUDE=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/include
> INTEL=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319
> INTEL_LICENSE_FILE=/apps/intel/licenses
> LIBRARY_PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/lib/intel64:/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/compiler/lib/intel64
> MKLROOT=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl
> MKL_LP64_ILP64=lp64
> MKL_TARGET_ARCH=intel64
> MPICH=/apps/mvapich2/1.8-intel
> MVAPICH=/apps/mvapich2/1.8-intel
> HYDRA_DEBUG=1
>
> Hydra internal environment:
> ---------------------------
> GFORTRAN_UNBUFFERED_PRECONNECTED=y
>
>
> Proxy information:
> *********************
> [1] proxy: h234 (1 cores)
> Exec list: ./osu_bw (1 processes);
>
> [2] proxy: h235 (1 cores)
> Exec list: ./osu_bw (1 processes);
>
>
> ==================================================================================================
>
> [mpiexec at h234] Timeout set to -1 (-1 means infinite)
> [mpiexec at h234] Got a control port string of h234:51408
>
> Proxy launch args: /apps/mvapich2/1.8-intel/bin/hydra_pmi_proxy --control-port h234:51408 --debug --rmk user --launcher ssh --demux poll --pgid 0 --retries 10
> --proxy-id
>
> [mpiexec at h234] PMI FD: (null); PMI PORT: (null); PMI ID/RANK: -1
> Arguments being passed to proxy 0:
> --version 1.4.1p1 --iface-ip-env-name MPICH_INTERFACE_HOSTNAME --hostname h234 --global-core-map 0,1,1 --filler-process-map 0,1,1 --global-process-count 2
> --auto-cleanup 1 --pmi-rank -1 --pmi-kvsname kvs_3934_0 --pmi-process-mapping (vector,(0,2,1)) --ckpoint-num -1 --global-inherited-env 59 'USER=ctierney'
> 'LOGNAME=ctierney' 'HOME=/home/ctierney'
> 'PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/bin/intel64:/home/ctierney/gmt/bin:/home/ctierney/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/esrl/bin:/opt/sge/default/bin/lx26-amd64:/apps/moab/default/bin:/apps/moab/default/sbin:/home/ctierney/GPU/trunk/GPU/bin:/apps/mvapich2/1.8-intel/bin'
> 'MAIL=/var/spool/mail/ctierney' 'SHELL=/bin/tcsh' 'SSH_CLIENT=10.178.22.53 58254 22' 'SSH_CONNECTION=10.178.22.53 58254 10.178.22.54 22' 'SSH_TTY=/dev/pts/0'
> 'TERM=xterm' 'HOSTTYPE=x86_64-linux' 'VENDOR=unknown' 'OSTYPE=linux' 'MACHTYPE=x86_64' 'SHLVL=1' 'PWD=/home/ctierney/OMB-3.1.1' 'GROUP=jetmgmt' 'HOST=h234'
> 'REMOTEHOST=h233' 'HOSTNAME=h234'
> 'LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:
> *.xcf=01;
> 35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:'
> 'G_BROKEN_FILENAMES=1' 'LESSOPEN=|/usr/bin/lesspipe.sh %s' 'MODULE_VERSION=3.2.9' 'MODULE_VERSION_STACK=3.2.9' 'MODULESHOME=/apps/Modules/3.2.9'
> 'MODULEPATH=/apps/Modules/versions:/apps/Modules/$MODULE_VERSION/modulefiles:/apps/Modules/modulefiles:/apps/Modules/default/systemdefaults:/apps/Modules/default/compilers:/apps/Modules/default/systemtools:/apps/Modules/default/datatools:/apps/Modules/default/modulefamilies/intel:/apps/Modules/default/modulefamilies/intel-mvapich2'
> 'LOADEDMODULES=sge:intel/12.1.4:mvapich2/1.8' 'QTDIR=/usr/lib64/qt-3.3' 'QTINC=/usr/lib64/qt-3.3/include' 'QTLIB=/usr/lib64/qt-3.3/lib'
> 'LD_LIBRARY_PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/lib/intel64:/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/compiler/lib/intel64:/opt/sge/default/lib/lx26-amd64'
> 'MANPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/man/en_US:/usr/share/man:/opt/sge/default/man:/apps/moab/default/man' 'MOAB=/apps/moab/default'
> 'MOABHOMEDIR=/apps/moab/moabhome' 'SGE_ROOT=/opt/sge/default'
> '_LMFILES_=/apps/Modules/default/systemdefaults/sge:/apps/Modules/default/compilers/intel/12.1.4:/apps/Modules/default/modulefamilies/intel/mvapich2/1.8'
> 'GPUF2C=/home/ctierney/GPU/trunk/GPU' 'GMT=/home/ctierney/gmt' 'X509_USER_PROXY=/home/ctierney/.x509_user_proxy'
> 'PERL5LIB=/home/ctierney/chron/lib:/home/ctierney/chron/lib/perl5/site_perl' 'HPSS_PRINCIPAL=craig.tierney'
> 'HPSS_KEYTAB_PATH=/home/ctierney/hpss/craig.tierney.keytab' 'HPSS_SERVER_HOST=hpsscore1.fairmont.rdhpcs.noaa.gov'
> 'HPSS_PFTPC_PORT_RANGE=ncacn_ip_tcp[38000-38999]' 'HPSS_HOSTNAME=h234.boulder.rdhpcs.noaa.gov' 'HPSS_CFG_FILE_PATH=/home/ctierney'
> 'CPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/include' 'FPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/includelp64'
> 'INCLUDE=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/include' 'INTEL=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319'
> 'INTEL_LICENSE_FILE=/apps/intel/licenses'
> 'LIBRARY_PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/lib/intel64:/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/compiler/lib/intel64'
> 'MKLROOT=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl' 'MKL_LP64_ILP64=lp64' 'MKL_TARGET_ARCH=intel64' 'MPICH=/apps/mvapich2/1.8-intel'
> 'MVAPICH=/apps/mvapich2/1.8-intel' 'HYDRA_DEBUG=1' --global-user-env 0 --global-system-env 1 'GFORTRAN_UNBUFFERED_PRECONNECTED=y' --proxy-core-count 1 --exec
> --exec-appnum 0 --exec-proc-count 1 --exec-local-env 0 --exec-wdir /home/ctierney/OMB-3.1.1 --exec-args 1 ./osu_bw
>
> [mpiexec at h234] PMI FD: (null); PMI PORT: (null); PMI ID/RANK: -1
> Arguments being passed to proxy 1:
> --version 1.4.1p1 --iface-ip-env-name MPICH_INTERFACE_HOSTNAME --hostname h235 --global-core-map 1,1,0 --filler-process-map 1,1,0 --global-process-count 2
> --auto-cleanup 1 --pmi-rank -1 --pmi-kvsname kvs_3934_0 --pmi-process-mapping (vector,(0,2,1)) --ckpoint-num -1 --global-inherited-env 59 'USER=ctierney'
> 'LOGNAME=ctierney' 'HOME=/home/ctierney'
> 'PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/bin/intel64:/home/ctierney/gmt/bin:/home/ctierney/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/esrl/bin:/opt/sge/default/bin/lx26-amd64:/apps/moab/default/bin:/apps/moab/default/sbin:/home/ctierney/GPU/trunk/GPU/bin:/apps/mvapich2/1.8-intel/bin'
> 'MAIL=/var/spool/mail/ctierney' 'SHELL=/bin/tcsh' 'SSH_CLIENT=10.178.22.53 58254 22' 'SSH_CONNECTION=10.178.22.53 58254 10.178.22.54 22' 'SSH_TTY=/dev/pts/0'
> 'TERM=xterm' 'HOSTTYPE=x86_64-linux' 'VENDOR=unknown' 'OSTYPE=linux' 'MACHTYPE=x86_64' 'SHLVL=1' 'PWD=/home/ctierney/OMB-3.1.1' 'GROUP=jetmgmt' 'HOST=h234'
> 'REMOTEHOST=h233' 'HOSTNAME=h234'
> 'LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:
> *.xcf=01;
> 35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:'
> 'G_BROKEN_FILENAMES=1' 'LESSOPEN=|/usr/bin/lesspipe.sh %s' 'MODULE_VERSION=3.2.9' 'MODULE_VERSION_STACK=3.2.9' 'MODULESHOME=/apps/Modules/3.2.9'
> 'MODULEPATH=/apps/Modules/versions:/apps/Modules/$MODULE_VERSION/modulefiles:/apps/Modules/modulefiles:/apps/Modules/default/systemdefaults:/apps/Modules/default/compilers:/apps/Modules/default/systemtools:/apps/Modules/default/datatools:/apps/Modules/default/modulefamilies/intel:/apps/Modules/default/modulefamilies/intel-mvapich2'
> 'LOADEDMODULES=sge:intel/12.1.4:mvapich2/1.8' 'QTDIR=/usr/lib64/qt-3.3' 'QTINC=/usr/lib64/qt-3.3/include' 'QTLIB=/usr/lib64/qt-3.3/lib'
> 'LD_LIBRARY_PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/lib/intel64:/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/compiler/lib/intel64:/opt/sge/default/lib/lx26-amd64'
> 'MANPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/man/en_US:/usr/share/man:/opt/sge/default/man:/apps/moab/default/man' 'MOAB=/apps/moab/default'
> 'MOABHOMEDIR=/apps/moab/moabhome' 'SGE_ROOT=/opt/sge/default'
> '_LMFILES_=/apps/Modules/default/systemdefaults/sge:/apps/Modules/default/compilers/intel/12.1.4:/apps/Modules/default/modulefamilies/intel/mvapich2/1.8'
> 'GPUF2C=/home/ctierney/GPU/trunk/GPU' 'GMT=/home/ctierney/gmt' 'X509_USER_PROXY=/home/ctierney/.x509_user_proxy'
> 'PERL5LIB=/home/ctierney/chron/lib:/home/ctierney/chron/lib/perl5/site_perl' 'HPSS_PRINCIPAL=craig.tierney'
> 'HPSS_KEYTAB_PATH=/home/ctierney/hpss/craig.tierney.keytab' 'HPSS_SERVER_HOST=hpsscore1.fairmont.rdhpcs.noaa.gov'
> 'HPSS_PFTPC_PORT_RANGE=ncacn_ip_tcp[38000-38999]' 'HPSS_HOSTNAME=h234.boulder.rdhpcs.noaa.gov' 'HPSS_CFG_FILE_PATH=/home/ctierney'
> 'CPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/include' 'FPATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/includelp64'
> 'INCLUDE=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/include' 'INTEL=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319'
> 'INTEL_LICENSE_FILE=/apps/intel/licenses'
> 'LIBRARY_PATH=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl/lib/intel64:/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/compiler/lib/intel64'
> 'MKLROOT=/apps/intel/12.1.4/composer_xe_2011_sp1.10.319/mkl' 'MKL_LP64_ILP64=lp64' 'MKL_TARGET_ARCH=intel64' 'MPICH=/apps/mvapich2/1.8-intel'
> 'MVAPICH=/apps/mvapich2/1.8-intel' 'HYDRA_DEBUG=1' --global-user-env 0 --global-system-env 1 'GFORTRAN_UNBUFFERED_PRECONNECTED=y' --proxy-core-count 1 --exec
> --exec-appnum 0 --exec-proc-count 1 --exec-local-env 0 --exec-wdir /home/ctierney/OMB-3.1.1 --exec-args 1 ./osu_bw
>
> [mpiexec at h234] Launch arguments: /apps/mvapich2/1.8-intel/bin/hydra_pmi_proxy --control-port h234:51408 --debug --rmk user --launcher ssh --demux poll --pgid 0
> --retries 10 --proxy-id 0
> [mpiexec at h234] Launch arguments: /usr/bin/ssh -x h235 "/apps/mvapich2/1.8-intel/bin/hydra_pmi_proxy" --control-port h234:51408 --debug --rmk user --launcher ssh
> --demux poll --pgid 0 --retries 10 --proxy-id 1
> [proxy:0:0 at h234] got pmi command (from 0): init
> pmi_version=1 pmi_subversion=1
> [proxy:0:0 at h234] PMI response: cmd=response_to_init pmi_version=1 pmi_subversion=1 rc=0
> [proxy:0:0 at h234] got pmi command (from 0): get_maxes
>
> [proxy:0:0 at h234] PMI response: cmd=maxes kvsname_max=256 keylen_max=64 vallen_max=1024
> [proxy:0:0 at h234] got pmi command (from 0): get_appnum
>
> [proxy:0:0 at h234] PMI response: cmd=appnum appnum=0
> [proxy:0:0 at h234] got pmi command (from 0): get_my_kvsname
>
> [proxy:0:0 at h234] PMI response: cmd=my_kvsname kvsname=kvs_3934_0
> [proxy:0:0 at h234] got pmi command (from 0): get_my_kvsname
>
> [proxy:0:0 at h234] PMI response: cmd=my_kvsname kvsname=kvs_3934_0
> [proxy:0:0 at h234] got pmi command (from 0): get
> kvsname=kvs_3934_0 key=PMI_process_mapping
> [proxy:0:0 at h234] PMI response: cmd=get_result rc=0 msg=success value=(vector,(0,2,1))
> [cli_0]: aborting job:
> Fatal error in MPI_Init:
> Other MPI error
>
>
> =====================================================================================
> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> = EXIT CODE: 256
> = CLEANING UP REMAINING PROCESSES
> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> =====================================================================================
> [proxy:0:1 at h235] got pmi command (from 4): init
> pmi_version=1 pmi_subversion=1
> [proxy:0:1 at h235] PMI response: cmd=response_to_init pmi_version=1 pmi_subversion=1 rc=0
> [proxy:0:1 at h235] got pmi command (from 4): get_maxes
>
> [proxy:0:1 at h235] PMI response: cmd=maxes kvsname_max=256 keylen_max=64 vallen_max=1024
> [proxy:0:1 at h235] got pmi command (from 4): get_appnum
>
> [proxy:0:1 at h235] PMI response: cmd=appnum appnum=0
> [proxy:0:1 at h235] got pmi command (from 4): get_my_kvsname
>
> [proxy:0:1 at h235] PMI response: cmd=my_kvsname kvsname=kvs_3934_0
> [proxy:0:1 at h235] got pmi command (from 4): get_my_kvsname
>
> [proxy:0:1 at h235] PMI response: cmd=my_kvsname kvsname=kvs_3934_0
> [proxy:0:1 at h235] got pmi command (from 4): get
> kvsname=kvs_3934_0 key=PMI_process_mapping
> [proxy:0:1 at h235] PMI response: cmd=get_result rc=0 msg=success value=(vector,(0,2,1))
> [cli_1]: aborting job:
> Fatal error in MPI_Init:
> Other MPI error
>
>
> =====================================================================================
> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> = EXIT CODE: 256
> = CLEANING UP REMAINING PROCESSES
> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> =====================================================================================
>
> _______________________________________________
> mvapich-discuss mailing list
> mvapich-discuss at cse.ohio-state.edu
> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>
--
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo
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