[mvapich-discuss] Fwd: Run-time libraries Question for
mpiexec.hydra on latst MVAPICH2 1.8
Michael E. Thomadakis
miket at tamu.edu
Tue Jul 3 14:58:54 EDT 2012
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miket at login006[pts/9]exp $ mpiexec.hydra -verbose -hosts login005 -np 4 /bin/hostname
host: login005
==================================================================================================
mpiexec options:
----------------
Base path: /scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin/
Launcher: (null)
Debug level: 1
Enable X: -1
Global environment:
-------------------
LC_PAPER=en_US.UTF-8
MODULE_VERSION_STACK=3.2.7
MANPATH=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/share/man:/scratch/miket/software/intelXE/composerxe/man/en_US:/g/home/pbs/torque/current/man:/g/home/ams/man:/g/software/man:/g/home/pbs/mpiexec/current/man:/g/home/pbs/mpispawn/current/share/man:/g/software/Modules/3.2.7/share/man::/scratch/miket/software/share/man:/scratch/miket/software/man
LC_ADDRESS=en_US.UTF-8
LC_MONETARY=en_US.UTF-8
HOSTNAME=login006
INTEL_LICENSE_FILE=/scratch/miket/software/intelXE/licenses
SHELL=/bin/bash
TERM=xterm
IIDB_BIN=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64
IVERSION=12.1.4-mvapich2/1.8-r5435+limic2-0-Intel64
HISTSIZE=4000
SSH_CLIENT=165.91.34.10 54982 22
KDE_NO_IPV6=1
IFC_MAN=/scratch/miket/software/intelXE/composerxe/man/en_US
SCRATCHP=/scratch/miket
WINDOWID=46137421
LC_NUMERIC=en_US.UTF-8
OLDPWD=/g/home/miket
QTDIR=/usr/lib64/qt-3.3
QTINC=/usr/lib64/qt-3.3/include
SSH_TTY=/dev/pts/6
VTUNE_USER_DIR=/scratch/miket/VTune
USER=miket
HISTFILESIZE=4000
LC_TELEPHONE=en_US.UTF-8
LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.btm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.bz=00;31:*.tz=00;31:*.rpm=00;31:*.cpio=00;31:*.jpg=00;35:*.gif=00;35:*.bmp=00;35:*.xbm=00;35:*.xpm=00;35:*.png=00;35:*.tif=00;35:
ICC_MAN=/scratch/miket/software/intelXE/composerxe/man/en_US
LD_LIBRARY_PATH=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/lib:/scratch/miket/software/intelXE/composerxe/lib/intel64
intelxer=/scratch/miket/software/intelXE
IFC_BIN=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64
KDEDIR=/usr
ILOG_LICENSE_FILE=/g/home/miket/cplex/access.ilm
NLSPATH=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64/locale/%l_%t/%N:/scratch/miket/software/intelXE/composerxe/idb/intel64/locale/%l_%t/%N
PATH=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/sbin:/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin:/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64:/scratch/miket/software/Adobe/Reader9/bin:/scratch/miket/software/emacs/23.4/gcc/bin:/sbin:/usr/sbin:/g/home/pbs/maui/current/bin:/g/home/pbs/maui/current/sbin:/g/home/pbs/torque/current/bin:/g/home/pbs/torque/current/sbin:/g/home/ams/bin:/g/software/bin:/g/software/adobe/Adobe/Reader9/bin:/usr/lib64/qt-3.3/bin:/g/home/pbs/mpiexec/current/bin:/g/home/pbs/mpispawn/current/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/lpp/mmfs/bin:/g/home/miket/bin:/g/home/miket/bin:/scratch/miket/software/bin
MAIL=/var/spool/mail/miket
MODULE_VERSION=3.2.7
ICC_BIN=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64
LC_MESSAGES=en_US.UTF-8
LC_IDENTIFICATION=en_US.UTF-8
LC_COLLATE=en_US.UTF-8
PWD=/scratch/miket/cs691/performance/benchmarking/networks/Intel64/HPCI/exp
INPUTRC=/etc/inputrc
_LMFILES_=/scratch/miket/modules/mtintelXE-compilers:/scratch/miket/modules/mtmvapich2_1.8-latest-intelXE
LANG=en_US
KDE_IS_PRELINKED=1
MODULEPATH=/scratch/miket/modules:/g/software/Modules/modulefiles/Development:/g/software/Modules/modulefiles/Applications
PROFILE_TAMU=1
LC_MEASUREMENT=en_US.UTF-8
LOADEDMODULES=mtintelXE-compilers:mtmvapich2_1.8-latest-intelXE
MV_MPI_ROOT=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE
SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
HISTCONTROL=ignoredups
HOME=/g/home/miket
SHLVL=2
LANGUAGE=en_US:en
IFC_LIB=/scratch/miket/software/intelXE/composerxe/lib/intel64
LOGNAME=miket
ICC_LIB=/scratch/miket/software/intelXE/composerxe/lib/intel64
CVS_RSH=ssh
QTLIB=/usr/lib64/qt-3.3/lib
SSH_CONNECTION=165.91.34.10 54982 165.91.16.16 22
LC_CTYPE=en_US.UTF-8
MODULESHOME=/g/software/Modules/3.2.7
LESSOPEN=|/usr/bin/lesspipe.sh %s
OMP_NUM_THREADS=1
I_MPI_TIMER_KIND=rdtsc
MV_MPI_EX=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/share
uscratch=/scratch/miket
sp=/scratch/miket/software
IIDB_MAN=/scratch/miket/software/intelXE/composerxe/man/en_US
LC_TIME=en_US.UTF-8
G_BROKEN_FILENAMES=1
SCRATCH=/scratch/miket
COLORTERM=gnome-terminal
LC_NAME=en_US.UTF-8
module=() { eval `/g/software/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
}
_=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin/mpiexec.hydra
Hydra internal environment:
---------------------------
GFORTRAN_UNBUFFERED_PRECONNECTED=y
Proxy information:
*********************
[1] proxy: login005 (1 cores)
Exec list: /bin/hostname (4 processes);
==================================================================================================
[mpiexec at login006] Timeout set to -1 (-1 means infinite)
[mpiexec at login006] Got a control port string of login006:45310
Proxy launch args: /scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin/hydra_pmi_proxy --control-port login006:45310 --debug --rmk user --launcher ssh --demux poll --pgid 0 --retries 10 --proxy-id
[mpiexec at login006] PMI FD: (null); PMI PORT: (null); PMI ID/RANK: -1
Arguments being passed to proxy 0:
--version 1.4.1p1 --iface-ip-env-name MPICH_INTERFACE_HOSTNAME --hostname login005 --global-core-map 0,1,0 --filler-process-map 0,1,0 --global-process-count 4 --auto-cleanup 1 --pmi-rank -1 --pmi-kvsname kvs_31811_0 --pmi-process-mapping (vector,(0,1,1)) --ckpoint-num -1 --global-inherited-env 78 'LC_PAPER=en_US.UTF-8' 'MODULE_VERSION_STACK=3.2.7' 'MANPATH=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/share/man:/scratch/miket/software/intelXE/composerxe/man/en_US:/g/home/pbs/torque/current/man:/g/home/ams/man:/g/software/man:/g/home/pbs/mpiexec/current/man:/g/home/pbs/mpispawn/current/share/man:/g/software/Modules/3.2.7/share/man::/scratch/miket/software/share/man:/scratch/miket/software/man' 'LC_ADDRESS=en_US.UTF-8' 'LC_MONETARY=en_US.UTF-8' 'HOSTNAME=login006' 'INTEL_LICENSE_FILE=/scratch/miket/software/intelXE/licenses' 'SHELL=/bin/bash' 'TERM=xterm' 'IIDB_BIN=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64' 'IVERSION=12.1.4-mvapich2/1.8-r5435+limic2-0-Intel64' 'HISTSIZE=4000' 'SSH_CLIENT=165.91.34.10 54982 22' 'KDE_NO_IPV6=1' 'IFC_MAN=/scratch/miket/software/intelXE/composerxe/man/en_US' 'SCRATCHP=/scratch/miket' 'WINDOWID=46137421' 'LC_NUMERIC=en_US.UTF-8' 'OLDPWD=/g/home/miket' 'QTDIR=/usr/lib64/qt-3.3' 'QTINC=/usr/lib64/qt-3.3/include' 'SSH_TTY=/dev/pts/6' 'VTUNE_USER_DIR=/scratch/miket/VTune' 'USER=miket' 'HISTFILESIZE=4000' 'LC_TELEPHONE=en_US.UTF-8' 'LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.btm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.bz=00;31:*.tz=00;31:*.rpm=00;31:*.cpio=00;31:*.jpg=00;35:*.gif=00;35:*.bmp=00;35:*.xbm=00;35:*.xpm=00;35:*.png=00;35:*.tif=00;35:' 'ICC_MAN=/scratch/miket/software/intelXE/composerxe/man/en_US' 'LD_LIBRARY_PATH=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/lib:/scratch/miket/software/intelXE/composerxe/lib/intel64' 'intelxer=/scratch/miket/software/intelXE' 'IFC_BIN=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64' 'KDEDIR=/usr' 'ILOG_LICENSE_FILE=/g/home/miket/cplex/access.ilm' 'NLSPATH=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64/locale/%l_%t/%N:/scratch/miket/software/intelXE/composerxe/idb/intel64/locale/%l_%t/%N' 'PATH=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/sbin:/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin:/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64:/scratch/miket/software/Adobe/Reader9/bin:/scratch/miket/software/emacs/23.4/gcc/bin:/sbin:/usr/sbin:/g/home/pbs/maui/current/bin:/g/home/pbs/maui/current/sbin:/g/home/pbs/torque/current/bin:/g/home/pbs/torque/current/sbin:/g/home/ams/bin:/g/software/bin:/g/software/adobe/Adobe/Reader9/bin:/usr/lib64/qt-3.3/bin:/g/home/pbs/mpiexec/current/bin:/g/home/pbs/mpispawn/current/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/lpp/mmfs/bin:/g/home/miket/bin:/g/home/miket/bin:/scratch/miket/software/bin' 'MAIL=/var/spool/mail/miket' 'MODULE_VERSION=3.2.7' 'ICC_BIN=/scratch/miket/software/intelXE/composerxe/pkg_bin/intel64' 'LC_MESSAGES=en_US.UTF-8' 'LC_IDENTIFICATION=en_US.UTF-8' 'LC_COLLATE=en_US.UTF-8' 'PWD=/scratch/miket/cs691/performance/benchmarking/networks/Intel64/HPCI/exp' 'INPUTRC=/etc/inputrc' '_LMFILES_=/scratch/miket/modules/mtintelXE-compilers:/scratch/miket/modules/mtmvapich2_1.8-latest-intelXE' 'LANG=en_US' 'KDE_IS_PRELINKED=1' 'MODULEPATH=/scratch/miket/modules:/g/software/Modules/modulefiles/Development:/g/software/Modules/modulefiles/Applications' 'PROFILE_TAMU=1' 'LC_MEASUREMENT=en_US.UTF-8' 'LOADEDMODULES=mtintelXE-compilers:mtmvapich2_1.8-latest-intelXE' 'MV_MPI_ROOT=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE' 'SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass' 'HISTCONTROL=ignoredups' 'HOME=/g/home/miket' 'SHLVL=2' 'LANGUAGE=en_US:en' 'IFC_LIB=/scratch/miket/software/intelXE/composerxe/lib/intel64' 'LOGNAME=miket' 'ICC_LIB=/scratch/miket/software/intelXE/composerxe/lib/intel64' 'CVS_RSH=ssh' 'QTLIB=/usr/lib64/qt-3.3/lib' 'SSH_CONNECTION=165.91.34.10 54982 165.91.16.16 22' 'LC_CTYPE=en_US.UTF-8' 'MODULESHOME=/g/software/Modules/3.2.7' 'LESSOPEN=|/usr/bin/lesspipe.sh %s' 'OMP_NUM_THREADS=1' 'I_MPI_TIMER_KIND=rdtsc' 'MV_MPI_EX=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/share' 'uscratch=/scratch/miket' 'sp=/scratch/miket/software' 'IIDB_MAN=/scratch/miket/software/intelXE/composerxe/man/en_US' 'LC_TIME=en_US.UTF-8' 'G_BROKEN_FILENAMES=1' 'SCRATCH=/scratch/miket' 'COLORTERM=gnome-terminal' 'LC_NAME=en_US.UTF-8' 'module=() { eval `/g/software/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
}' '_=/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin/mpiexec.hydra' --global-user-env 0 --global-system-env 1 'GFORTRAN_UNBUFFERED_PRECONNECTED=y' --proxy-core-count 1 --exec --exec-appnum 0 --exec-proc-count 4 --exec-local-env 0 --exec-wdir /scratch/miket/cs691/performance/benchmarking/networks/Intel64/HPCI/exp --exec-args 1 /bin/hostname
[mpiexec at login006] Launch arguments: /usr/bin/ssh -x login005 "/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin/hydra_pmi_proxy" --control-port login006:45310 --debug --rmk user --launcher ssh --demux poll --pgid 0 --retries 10 --proxy-id 0
/scratch/miket/software/mvapich2/1.8-r5435+limic2/intelXE/bin/hydra_pmi_proxy: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory
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