[mvapich-discuss] Configure error confdefs.h

Mon Jun 6 17:10:00 EDT 2011

This is the config.log for the osu micro benchmarks.  Did mvapich2
configure and build successfully?  It looks like mvapich2 was built
with checkpoint/restart support but ``libcr'' is not being found when
trying to compile the benchmarks.

Please let me know what it is that you're compiling and the steps that
you've used.  Thanks.

On Mon, Jun 6, 2011 at 5:05 PM, Hoot Thompson <hoot at ptpnow.com> wrote:
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
>
> It was created by OSU-Micro-Benchmarks configure 3.3, which was
> generated by GNU Autoconf 2.65.  Invocation command line was
>
>   $ ./configure
>
> ## --------- ##
> ## Platform. ##
> ## --------- ##
>
> hostname = ubuntu-1
> uname -m = x86_64
> uname -r = 2.6.38-8-server
> uname -s = Linux
> uname -v = #42-Ubuntu SMP Mon Apr 11 03:49:04 UTC 2011
>
> /usr/bin/uname -p = unknown
> /bin/uname -X     = unknown
>
> /bin/arch              = unknown
> /usr/bin/arch -k       = unknown
> /usr/convex/getsysinfo = unknown
> /usr/bin/hostinfo      = unknown
> /bin/machine           = unknown
> /usr/bin/oslevel       = unknown
> /bin/universe          = unknown
>
> PATH: /usr/local/sbin
> PATH: /usr/local/bin
> PATH: /usr/sbin
> PATH: /usr/bin
> PATH: /sbin
> PATH: /bin
> PATH: /usr/games
>
>
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
>
> configure:2154: checking for a BSD-compatible install
> configure:2222: result: /usr/bin/install -c
> configure:2233: checking whether build environment is sane
> configure:2283: result: yes
> configure:2424: checking for a thread-safe mkdir -p
> configure:2463: result: /bin/mkdir -p
> configure:2476: checking for gawk
> configure:2506: result: no
> configure:2476: checking for mawk
> configure:2492: found /usr/bin/mawk
> configure:2503: result: mawk
> configure:2514: checking whether make sets $(MAKE)
> configure:2536: result: yes
> configure:2672: checking for mpicc
> configure:2688: found /usr/bin/mpicc
> configure:2699: result: mpicc
> configure:2730: checking for C compiler version
> configure:2739: mpicc --version >&5
> gcc (Ubuntu/Linaro 4.5.2-8ubuntu4) 4.5.2
> Copyright (C) 2010 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
> configure:2750: $? = 0
> configure:2739: mpicc -v >&5
> mpicc for MPICH2 version 1.3.1
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/lib/x86_64-linux-gnu/gcc/x86_64-linux-gnu/4.5.2/lto-wrapper
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro
> 4.5.2-8ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-4.5/README.Bugs
> --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
> --program-suffix=-4.5 --enable-shared --enable-multiarch
> --with-multiarch-defaults=x86_64-linux-gnu --enable-linker-build-id
> --with-system-zlib --libexecdir=/usr/lib/x86_64-linux-gnu
> --without-included-gettext --enable-threads=posix
> --with-gxx-include-dir=/usr/include/c++/4.5
> --libdir=/usr/lib/x86_64-linux-gnu --enable-nls --with-sysroot=/
> --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> --enable-plugin --enable-gold --enable-ld=default --with-plugin-ld=ld.gold
> --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic
> --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
> --target=x86_64-linux-gnu
> Thread model: posix
> gcc version 4.5.2 (Ubuntu/Linaro 4.5.2-8ubuntu4)
> configure:2750: $? = 0
> configure:2739: mpicc -V >&5
> gcc: '-V' must come at the start of the command line
> configure:2750: $? = 1
> configure:2739: mpicc -qversion >&5
> gcc: unrecognized option '-qversion'
> /usr/bin/ld: cannot find -lcr
> collect2: ld returned 1 exit status
> configure:2750: $? = 1
> configure:2770: checking whether the C compiler works
> configure:2792: mpicc    conftest.c  >&5
> /usr/bin/ld: cannot find -lcr
> collect2: ld returned 1 exit status
> configure:2796: $? = 1
> configure:2834: result: no
> configure: failed program was:
> | /* confdefs.h */
> | #define PACKAGE_NAME "OSU-Micro-Benchmarks"
> | #define PACKAGE_TARNAME "osu-micro-benchmarks"
> | #define PACKAGE_VERSION "3.3"
> | #define PACKAGE_STRING "OSU-Micro-Benchmarks 3.3"
> | #define PACKAGE_BUGREPORT "mvapich-discuss at cse.ohio-state.edu"
> | #define PACKAGE_URL ""
> | #define PACKAGE "osu-micro-benchmarks"
> | #define VERSION "3.3"
> | /* end confdefs.h.  */
> |
> | int
> | main ()
> | {
> |
> |   ;
> |   return 0;
> | }
> configure:2839: error: in
> `/home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3':
> configure:2843: error: C compiler cannot create executables
> See `config.log' for more details.
>
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
>
> ac_cv_env_CC_set=
> ac_cv_env_CC_value=
> ac_cv_env_CFLAGS_set=
> ac_cv_env_CFLAGS_value=
> ac_cv_env_CPPFLAGS_set=
> ac_cv_env_CPPFLAGS_value=
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_LDFLAGS_set=
> ac_cv_env_LDFLAGS_value=
> ac_cv_env_LIBS_set=
> ac_cv_env_LIBS_value=
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_path_install='/usr/bin/install -c'
> ac_cv_path_mkdir=/bin/mkdir
> ac_cv_prog_AWK=mawk
> ac_cv_prog_ac_ct_CC=mpicc
> ac_cv_prog_make_make_set=yes
>
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
>
> ACLOCAL='${SHELL} /home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3/missing
> --run aclocal-1.11'
> AMDEPBACKSLASH=''
> AMDEP_FALSE=''
> AMDEP_TRUE=''
> AMTAR='${SHELL} /home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3/missing
> --run tar'
> AUTOCONF='${SHELL} /home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3/missing
> --run autoconf'
> AUTOHEADER='${SHELL}
> /home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3/missing --run autoheader'
> AUTOMAKE='${SHELL} /home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3/missing
> --run automake-1.11'
> AWK='mawk'
> CC='mpicc'
> CCDEPMODE=''
> CFLAGS=''
> CPP=''
> CPPFLAGS=''
> CYGPATH_W='echo'
> DEFS=''
> DEPDIR=''
> ECHO_C=''
> ECHO_N='-n'
> ECHO_T=''
> EGREP=''
> EXEEXT=''
> GREP=''
> INSTALL_DATA='${INSTALL} -m 644'
> INSTALL_PROGRAM='${INSTALL}'
> INSTALL_SCRIPT='${INSTALL}'
> INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
> LDFLAGS=''
> LIBOBJS=''
> LIBS=''
> LTLIBOBJS=''
> MAKEINFO='${SHELL} /home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3/missing
> --run makeinfo'
> MKDIR_P='/bin/mkdir -p'
> MPI2_LIBRARY_FALSE=''
> MPI2_LIBRARY_TRUE=''
> OBJEXT=''
> PACKAGE='osu-micro-benchmarks'
> PACKAGE_BUGREPORT='mvapich-discuss at cse.ohio-state.edu'
> PACKAGE_NAME='OSU-Micro-Benchmarks'
> PACKAGE_STRING='OSU-Micro-Benchmarks 3.3'
> PACKAGE_TARNAME='osu-micro-benchmarks'
> PACKAGE_URL=''
> PACKAGE_VERSION='3.3'
> PATH_SEPARATOR=':'
> SET_MAKE=''
> SHELL='/bin/bash'
> STRIP=''
> VERSION='3.3'
> ac_ct_CC='mpicc'
> am__EXEEXT_FALSE=''
> am__EXEEXT_TRUE=''
> am__fastdepCC_FALSE=''
> am__fastdepCC_TRUE=''
> am__include=''
> am__isrc=''
> am__leading_dot='.'
> am__quote=''
> am__tar='${AMTAR} chof - "$$tardir"'
> am__untar='${AMTAR} xf -'
> bindir='${exec_prefix}/bin'
> build_alias=''
> datadir='${datarootdir}'
> datarootdir='${prefix}/share'
> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
> dvidir='${docdir}'
> exec_prefix='NONE'
> host_alias=''
> htmldir='${docdir}'
> includedir='${prefix}/include'
> infodir='${datarootdir}/info'
> install_sh='${SHELL}
> /home/hoot/mpistuff/osu/osu-micro-benchmarks-3.3/install-sh'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localedir='${datarootdir}/locale'
> localstatedir='${prefix}/var'
> mandir='${datarootdir}/man'
> mkdir_p='/bin/mkdir -p'
> oldincludedir='/usr/include'
> pdfdir='${docdir}'
> prefix='NONE'
> program_transform_name='s,x,x,'
> psdir='${docdir}'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target_alias=''
>
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
>
> /* confdefs.h */
> #define PACKAGE_NAME "OSU-Micro-Benchmarks"
> #define PACKAGE_TARNAME "osu-micro-benchmarks"
> #define PACKAGE_VERSION "3.3"
> #define PACKAGE_STRING "OSU-Micro-Benchmarks 3.3"
> #define PACKAGE_BUGREPORT "mvapich-discuss at cse.ohio-state.edu"
> #define PACKAGE_URL ""
> #define PACKAGE "osu-micro-benchmarks"
> #define VERSION "3.3"
>
> configure: exit 77
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> -----Original Message-----
> From: Jonathan Perkins <perkinjo at cse.ohio-state.edu>
> To: Hoot Thompson <hoot at ptpnow.com>
> Cc: mvapich-discuss at cse.ohio-state.edu
> Subject: Re: [mvapich-discuss] Configure error confdefs.h
> Date: Mon, 6 Jun 2011 17:00:23 -0400
>
> Can you send me the config.log?
>
> On Mon, Jun 6, 2011 at 4:40 PM, Hoot Thompson <hoot at ptpnow.com> wrote:
>> Running Ubuntu 11.04 and I can't get past the configure step. I'm missing
>> confdefs.h it appears even with seemingly all relevant packages installed.
>> What Ubuntu (apt-get install) package installs confdefs.h?
>>
>>
>> Thanks in advance...
>>
>>
>> _______________________________________________
>> mvapich-discuss mailing list
>> mvapich-discuss at cse.ohio-state.edu
>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>
>>
>
>
>
>
>

-- 
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo