[mvapich-discuss] Compilation error

[Dan Kokron]

If you are using the Intel fortran compiler under the mpif90 wrapper,
then you are missing -lguide from your link line.

Dan

On Fri, 2011-07-22 at 10:51 -0500, Jim Bungener wrote:
> Hello, 
> 
> 
> I am trying to compile the latest version of the NASA Fun3D CFD code
> on a CENTOS cluster running infiniband. 
> 
> 
> Before inifiniband we were using MPI and it compiled/ran fine. 
> 
> 
> Now that we are running infiniband we are using MVAPICH2 and I get the
> following compilation error:
> 
> 
> Any suggestions on where I could find the missing libraries?
> 
> 
> /apps/MVAPICH2//bin/mpif90 -I ..//libcore -I ..//libturb
> -I ..//libsmemrd -I ..//LibF90 -I ..//PHYSICS_DUMMY
> -I ..//PHYSICS_DEPS -I ..//libdesign -I ../FuncLib90 -I ../ -O2 -ip
> -align -fno-als -g -traceback -vec-report0    -o dual_mpi  cut_rad.o
> getgrad_driver.o gmres_matvec.o init_adjs.o main.o
> precond_bc_element_based.o precond_bc.o precond_bci.o
> precond_inviscid.o precond_lamir.o precond_laminari.o precond_nonin.o
> precond.o precond_turbpart.o precond_turbparti.o precond_turbulent.o
> precond_turbulenti.o radp.o relax_adjoint.o
> residual_bc_element_based.o residual_bc residual_bci.o residual_cut.o
> residual_drdq.o residual_inviscid.o residual_inviscidi.o
> residual_laminar.o residual_laminari.o residual.o residual_nonin.o
> residual_turbpart.o residual_turbpar.o residual_turbulent.o
> residual_turbulenti.o -L..//libdesign -ldesign -L..//PHYSICS_DEPS
> -lFUN3DPhysicsDeps -L..//PHYSICS_DUMMY -lFUN3DPhysics -L..//LibF90
> -lFUN3DApp -lFUN3DUtil -lFUN3DCapDs -L..//libsmemrd -lsmemrd
> -L..//libturb -lturb -L..//libcore -lcore -L/apps/CFD/ParMetis-3.2.0
> -lparmetis -lmetis -L/apps/CFD/secure/FUN3D/refine-1.7.1/lib -lrefine
> -lFAUXGeom       -L/apps/D/secure/FUN3D/knife-1.2.0/lib -lknife
> -L/apps/CFD/secure/cgnslib_3.1.3/src//lib -lcgns       -Vaxlib -lm
> -lm 
> ifort: command line remark #10010: option '-Vaxlib' is deprecated and
> will be removed in a future release. See '-help deprecated'
> /apps/MVAPICH2/lib/libmpich.a(dbg_printf.o): In function
> `MPIU_dbglog_vprintf':
> dbg_printf.c:(.text+0x30): undefined reference to
> `__kmpc_global_thread_num'
> dbg_printf.c:(.text+0x251): undefined reference to
> `__kmpc_for_static_init_4'
> dbg_printf.c:(.text+0x462): undefined reference to
> `__kmpc_for_static_fini'
> dbg_printf.c:(.text+0x53e): undefined reference to `__kmpc_ok_to_fork'
> dbg_printf.c:(.text+0x573): undefined reference to `__kmpc_fork_call'
> /apps/MVAPICH2/lib/libmpich.a(dbg_printf.o): In function
> `MPIU_dbg_printf':
> dbg_printf.c:(.text+0x7f8): undefined reference to
> `__kmpc_global_thread_num'
> dbg_printf.c:(.text+0xacc): undefined reference to
> `__kmpc_for_static_init_4'
> dbg_printf.c:(.text+0xcdd): undefined reference to
> `__kmpc_for_static_fini'
> dbg_printf.c:(.text+0xdc0): undefined reference to `__kmpc_ok_to_fork'
> dbg_printf.c:(.text+0xdf5): undefined reference to `__kmpc_fork_call'
> /apps/MVAPICH2/lib/libmpich.a(dbg_printf.o): In function
> `MPIU_dbglog_printf':
> dbg_printf.c:(.text+0x1078): undefined reference to
> `__kmpc_global_thread_num'
> dbg_printf.c:(.text+0x12fa): undefined reference to
> `__kmpc_for_static_init_4'
> dbg_printf.c:(.text+0x150b): undefined reference to
> `__kmpc_for_static_fini'
> dbg_printf.c:(.text+0x15ee): undefined reference to
> `__kmpc_ok_to_fork'
> dbg_printf.c:(.text+0x1623): undefined reference to `__kmpc_fork_call'
> /apps/MVAPICH2/lib/libmpich.a(dbg_printf.o): In function
> `MPIU_dbg_init':
> dbg_printf.c:(.text+0x1a72): undefined reference to
> `__kmpc_global_thread_num'
> dbg_printf.c:(.text+0x1b63): undefined reference to
> `__kmpc_for_static_init_4'
> dbg_printf.c:(.text+0x1d74): undefined reference to
> `__kmpc_for_static_fini'
> dbg_printf.c:(.text+0x1ea2): undefined reference to
> `__kmpc_ok_to_fork'
> dbg_printf.c:(.text+0x1ed7): undefined reference to `__kmpc_fork_call'
> /apps/MVAPICH2/lib/libmpich.a(topology.o): In function
> `hwloc_setup_misc_level_from_distances':
> topology.c:(.text+0xcc): undefined reference to
> `__kmpc_global_thread_num'
> topology.c:(.text+0xb0b): undefined reference to
> `__kmpc_for_static_init_4'
> topology.c:(.text+0xe51): undefined reference to
> `__kmpc_for_static_fini'
> topology.c:(.text+0x1562): undefined reference to `__kmpc_ok_to_fork'
> topology.c:(.text+0x15f8): undefined reference to `__kmpc_fork_call'
> /apps/MVAPICH2/lib/libmpich.a(topology.o): In function
> `hwloc__setup_misc_level_from_distances':
> topology.c:(.text+0x1caf): undefined reference to
> `__kmpc_global_thread_num'
> topology.c:(.text+0x25f5): undefined reference to
> `__kmpc_for_static_init_4'
> topology.c:(.text+0x293e): undefined reference to
> `__kmpc_for_static_fini'
> topology.c:(.text+0x3045): undefined reference to `__kmpc_ok_to_fork'
> topology.c:(.text+0x30d8): undefined reference to `__kmpc_fork_call'
> /apps/MVAPICH2/lib/libmpich.a(topology-linux.o): In function
> `look_cpuinfo':
> topology-linux.c:(.text+0x3a13): undefined reference to
> `__kmpc_global_thread_num'
> topology-linux.c:(.text+0x3a4a): undefined reference to
> `__kmpc_ok_to_fork'
> topology-linux.c:(.text+0x3aa1): undefined reference to
> `__kmpc_fork_call'
> topology-linux.c:(.text+0x3ca8): undefined reference to
> `__kmpc_for_static_init_4'
> topology-linux.c:(.text+0x3db2): undefined reference to
> `__kmpc_for_static_fini'
> make[2]: *** [dual_mpi] Error 1
> make[2]: Leaving directory
> `/apps/CFD/secure/FUN3D/fun3d-11.6-54779/Adjoint'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/apps/CFD/secure/FUN3D/fun3d-11.6-54779'
> make: *** [all] Error 2
> [root at orange1 fun3d-11.6-54779]# 
-- 
Dan Kokron
Global Modeling and Assimilation Office
NASA Goddard Space Flight Center
Greenbelt, MD 20771
Daniel.S.Kokron at nasa.gov
Phone: (301) 614-5192
Fax:   (301) 614-5304