[mvapich-discuss] Make Issue w/ Mvapich2-1.6 RC2 - Error label 'fn_fail' used but not defined

[bright.yang at vaisala.com]

Hi,

 

 I received an error message after configure and while make, here is the
error message -

  CC              dup_fn.c

  AR cr ../../../lib/libmpich.a attr_delete.o attr_get.o attr_put.o
comm_create_keyval.o comm_delete_attr.o comm_free_keyval.o
comm_get_attr.o comm_set_attr.o keyval_create.o keyval_free.o
type_create_keyval.o type_delete_attr.o type_free_keyval.o
type_get_attr.o type_set_attr.o win_create_keyval.o win_delete_attr.o
win_free_keyval.o win_get_attr.o win_set_attr.o attrutil.o dup_fn.o

  RANLIB          libmpich.a

date > .libstamp0

make[3]: Leaving directory `/root/download/mvapich2-1.6rc2/src/mpi/attr'

make[3]: Entering directory
`/root/download/mvapich2-1.6rc2/src/mpi/coll'

  CC              allreduce.c

  CC              barrier.c

  CC              op_create.c

  CC              op_free.c

  CC              bcast.c

  CC              alltoall.c

  CC              alltoallv.c

  CC              reduce.c

  CC              scatter.c

  CC              gather.c

  CC              scatterv.c

  CC              gatherv.c

  CC              scan.c

  CC              exscan.c

  CC              allgather.c

  CC              allgatherv.c

  CC              red_scat.c

  CC              alltoallw.c

  CC              reduce_local.c

  CC              op_commutative.c

  CC              red_scat_block.c

  CC              allgather_osu.c

  CC              allgatherv_osu.c

  CC              allreduce_osu.c

allreduce_osu.c: In function 'MPIR_Allreduce_OSU':

allreduce_osu.c:132: error: label 'fn_fail' used but not defined

allreduce_osu.c: At top level:

allreduce_osu.c:279: error: expected identifier or '(' before 'else'

allreduce_osu.c:627: error: expected identifier or '(' before 'if'

allreduce_osu.c:631: error: expected '=', ',', ';', 'asm' or
'__attribute__' before ':' token

allreduce_osu.c:632: error: expected identifier or '(' before 'while'

allreduce_osu.c:633: error: expected identifier or '(' before '{' token

allreduce_osu.c:634: error: expected identifier or '(' before 'return'

allreduce_osu.c:636: error: expected '=', ',', ';', 'asm' or
'__attribute__' before ':' token

allreduce_osu.c:638: error: expected identifier or '(' before '}' token

make[3]: *** [allreduce_osu.o] Error 1

make[3]: Leaving directory `/root/download/mvapich2-1.6rc2/src/mpi/coll'

make[2]: *** [all-redirect] Error 2

make[2]: Leaving directory `/root/download/mvapich2-1.6rc2/src/mpi'

make[1]: *** [all-redirect] Error 2

make[1]: Leaving directory `/root/download/mvapich2-1.6rc2/src'

make: *** [all-redirect] Error 2

 

I did configure successfully, see my flags & configure log below.
Thanks! -

env CC=gcc CXX=cpp CFLAGS="-DSPAWN_DEBUG -DMPISPAWN_DEBUG"
F90="/opt/pgi/linux86-64/10.5/bin/pgf90"
FC="/opt/pgi/linux86-64/10.5/bin/pgf77"
FLIBS="/opt/pgi/linux86-64/10.5/lib/pgfmain.o" ./configure
--with-ib-include=/usr/local/include --with-ib-libpath=/usr/lib64
--prefix=/share/apps/mvapich216 --enable-g=dbg --enable-fast=none
--disable-cxx

 

Configuring MVAPICH2  with  '--with-ib-include=/usr/local/include'
'--with-ib-libpath=/usr/lib64' '--prefix=/share/apps/mvapich216'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'

checking build system type... x86_64-unknown-linux-gnu

checking whether to enable header caching... yes

Executing mpich2prereq in /root/download/mvapich2-1.6rc2/src/mpid/ch3
with 

Executing mpich2prereq in
/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/nemesis

sourcing /root/download/mvapich2-1.6rc2/src/pm/mpd/mpich2prereq

sourcing /root/download/mvapich2-1.6rc2/src/pm/hydra/mpich2prereq

sourcing /root/download/mvapich2-1.6rc2/src/pm/gforker/mpich2prereq

sourcing /root/download/mvapich2-1.6rc2/src/pm/mpd/setup_pm

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

configure: checking for any hwloc installation...

checking for hwloc_topology_set_pid in -lhwloc... no

checking whether the compiler defines __func__... yes

checking whether the compiler defines __FUNC__... no

checking whether the compiler sets __FUNCTION__... yes

checking for type of weak symbol alias support... pragma weak

checking whether __attribute__ ((weak)) allowed... yes

checking whether __attribute ((weak_import)) allowed... yes

checking for multiple weak symbol support... yes

checking whether we are using the GNU Fortran 77 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes

checking how to get verbose linking output from
/opt/pgi/linux86-64/10.5/bin/pgf77... -v

checking for Fortran 77 libraries of
/opt/pgi/linux86-64/10.5/bin/pgf77...  -L/opt/pgi/linux86-64/10.5/lib
-L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lpgftnrtl -lnspgc
-lpgc -lrt -lpthread -lm

checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts the FLIBS
found by autoconf... yes

checking whether C can link with  -L/opt/pgi/linux86-64/10.5/lib
-L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lpgftnrtl -lnspgc
-lpgc -lrt -lpthread -lm... yes

checking for linker for Fortran main programs... Use Fortran to link
programs

checking whether Fortran 77 and C objects are compatible... yes

checking for Fortran 77 name mangling... lower underscore

checking what libraries are needed to link Fortran programs with C
routines that use stdio... none

checking whether Fortran init will work with C... no

checking that f works as the extension for Fortran 90 program... yes

checking whether we are using the GNU Fortran 90 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... yes

checking for extension for Fortran 90 programs... f90

checking whether the Fortran 90 compiler
(/opt/pgi/linux86-64/10.5/bin/pgf90  -g ) works... yes

checking whether the Fortran 90 compiler
(/opt/pgi/linux86-64/10.5/bin/pgf90  -g ) is a cross-compiler... no

checking whether Fortran 90 works with Fortran 77... yes

checking whether Fortran accepts ! for comments... yes

checking for include directory flag for Fortran... -I

checking for Fortran 77 flag for library directories... -L

checking for which Fortran libraries are needed to link C with
Fortran... -L/opt/pgi/linux86-64/10.5/lib -L/usr/lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2  -lnspgc

checking whether Fortran compiler processes .F files with C
preprocessor... yes

checking that f works as the extension for Fortran 90 program... yes

checking whether we are using the GNU Fortran 90 compiler... (cached) no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g...
(cached) yes

checking for extension for Fortran 90 programs... f90

checking whether the Fortran 90 compiler
(/opt/pgi/linux86-64/10.5/bin/pgf90  -g ) works... yes

checking whether the Fortran 90 compiler
(/opt/pgi/linux86-64/10.5/bin/pgf90  -g ) is a cross-compiler... no

checking for Fortran 90 module extension... mod

checking for Fortran 90 module include flag... -I

checking whether Fortran 90 accepts f90 suffix... yes

checking whether Fortran 90 compiler processes .F90 files with C
preprocessor... yes

checking what libraries are needed to link Fortran90 programs with C
routines that use stdio... none

checking for f90 compiler vendor... pgi

checking for perl... /usr/bin/perl

checking for ar... ar

checking for ranlib... ranlib

checking for killall... killall

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install works... yes

checking whether install breaks libraries... no

checking whether mkdir -p works... yes

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for bash... /bin/bash

checking whether /bin/bash supports arrays... yes

checking for doctext... false

checking for location of doctext style files... unavailable

checking for an ANSI C-conforming const... yes

checking for working volatile... yes

checking for C/C++ restrict keyword... __restrict

checking for inline... inline

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking whether byte ordering is bigendian... no

checking whether C compiler allows unaligned doubles... yes

checking whether gcc supports __func__... yes

Using gcc to determine dependencies

checking whether long double is supported... yes

checking whether long long is supported... yes

checking for max C struct integer alignment... eight

checking for max C struct floating point alignment... sixteen

checking for max C struct alignment of structs with doubles... eight

checking for max C struct floating point alignment with long doubles...
sixteen

configure: WARNING: Structures containing long doubles may be aligned
differently from structures with floats or longs.  MVAPICH2 does not
handle this case automatically and you should avoid assumed extents for
structures containing float types.

checking if alignment of structs with doubles is based on position... no

checking if alignment of structs with long long ints is based on
position... no

checking if double alignment breaks rules, find actual alignment... no

checking for alignment restrictions on pointers... int or better

checking size of char... 1

checking size of unsigned char... 1

checking size of short... 2

checking size of unsigned short... 2

checking size of int... 4

checking size of unsigned int... 4

checking size of long... 8

checking size of unsigned long... 8

checking size of long long... 8

checking size of unsigned long long... 8

checking size of float... 4

checking size of double... 8

checking size of long double... 16

checking size of void *... 8

checking for ANSI C header files... (cached) yes

checking stddef.h usability... yes

checking stddef.h presence... yes

checking for stddef.h... yes

checking size of wchar_t... 4

checking size of float_int... 8

checking size of double_int... 16

checking size of long_int... 16

checking size of short_int... 8

checking size of two_int... 8

checking size of long_double_int... 32

checking sys/bitypes.h usability... yes

checking sys/bitypes.h presence... yes

checking for sys/bitypes.h... yes

checking for inttypes.h... (cached) yes

checking for stdint.h... (cached) yes

checking for int8_t... yes

checking for int16_t... yes

checking for int32_t... yes

checking for int64_t... yes

checking for uint8_t... yes

checking for uint16_t... yes

checking for uint32_t... yes

checking for uint64_t... yes

checking size of _Bool... 1

checking size of float _Complex... 8

checking size of double _Complex... 16

checking size of long double _Complex... 32

checking for _Bool... yes

checking for float _Complex... yes

checking for double _Complex... yes

checking for long double _Complex... yes

checking for size of Fortran type integer... 4

checking for size of Fortran type real... 4

checking for size of Fortran type double precision... 8

checking whether integer*1 is supported... yes

checking whether integer*2 is supported... yes

checking whether integer*4 is supported... yes

checking whether integer*8 is supported... yes

checking whether integer*16 is supported... yes

checking whether real*4 is supported... yes

checking whether real*8 is supported... yes

checking whether real*16 is supported... yes

checking for C type matching Fortran integer... int

checking for size of MPI_Status... 20

checking for values of Fortran logicals... True is -1 and False is 0

checking for Fortran 90 integer kind for 8-byte integers... 8

checking whether real*8 is supported in Fortran 90... yes

checking if char * pointers use byte addresses... yes

checking for alignment restrictions on ... no

checking for alignment restrictions on int32_t... no

checking size of MPIR_Bsend_data_t... 88

checking for gcc __asm__ and pentium cmpxchgl instruction... no

checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes

checking for gcc __asm__ and IA64 xchg4 instruction... no

checking for ANSI C header files... (cached) yes

checking for stdlib.h... (cached) yes

checking stdarg.h usability... yes

checking stdarg.h presence... yes

checking for stdarg.h... yes

checking for sys/types.h... (cached) yes

checking for string.h... (cached) yes

checking for inttypes.h... (cached) yes

checking limits.h usability... yes

checking limits.h presence... yes

checking for limits.h... yes

checking for stddef.h... (cached) yes

checking errno.h usability... yes

checking errno.h presence... yes

checking for errno.h... yes

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking endian.h usability... yes

checking endian.h presence... yes

checking for endian.h... yes

checking assert.h usability... yes

checking assert.h presence... yes

checking for assert.h... yes

checking sys/param.h usability... yes

checking sys/param.h presence... yes

checking for sys/param.h... yes

checking for sys/uio.h... yes

checking for size_t... yes

checking for setitimer... yes

checking for alarm... yes

checking for vsnprintf... yes

checking for vsprintf... yes

checking whether vsnprintf needs a declaration... no

checking for strerror... yes

checking for strncasecmp... yes

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for va_copy... yes

checking for variable argument list macro functionality... yes

checking valgrind.h usability... no

checking valgrind.h presence... no

checking for valgrind.h... no

checking memcheck.h usability... no

checking memcheck.h presence... no

checking for memcheck.h... no

checking valgrind/valgrind.h usability... no

checking valgrind/valgrind.h presence... no

checking for valgrind/valgrind.h... no

checking valgrind/memcheck.h usability... no

checking valgrind/memcheck.h presence... no

checking for valgrind/memcheck.h... no

checking for working alloca.h... yes

checking for alloca... yes

checking for strdup... yes

checking whether strdup needs a declaration... no

checking for mkstemp... yes

checking whether mkstemp needs a declaration... no

checking for fdopen... yes

checking whether fdopen needs a declaration... yes

checking for putenv... yes

checking whether putenv needs a declaration... no

checking for clock_gettime... no

checking for clock_getres... no

checking for gethrtime... no

checking for gettimeofday... yes

sourcing /root/download/mvapich2-1.6rc2/src/mpid/ch3/setup_device

RUNNING SETUP_DEVICE FOR THE CH3 DEVICE

sourcing
/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/setup_channel

RUNNING SETUP_CHANNEL FOR THE MRAIL CHANNEL

checking pthread.h usability... yes

checking pthread.h presence... yes

checking for pthread.h... yes

checking for fgrep... /bin/grep -F

checking for pthread_key_create in -lpthread... yes

checking for pthread_yield... yes

checking for pthread_key_create... yes

checking for pthread_cleanup_push... no

checking whether pthread_cleanup_push is available (may be a macro in
pthread.h)... no

checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes

checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... no

checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes

checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... no

checking for sched_yield... yes

checking for yield... no

checking for usleep... yes

checking for sleep... yes

checking for select... yes

checking for getpid... yes

checking for sched_setaffinity... yes

checking for sched_getaffinity... yes

checking for bindprocessor... no

checking for thread_policy_set... no

checking whether cpu_set_t available... yes

checking whether the CPU_SET and CPU_ZERO macros are defined... no

configure: configuring subsystem in src/openpa

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for style of include used by make... GNU

checking dependency style of gcc... gcc3

checking for ranlib... ranlib

checking whether to enable assertions... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking pthread.h usability... yes

checking pthread.h presence... yes

checking for pthread.h... yes

checking atomic.h usability... no

checking atomic.h presence... no

checking for atomic.h... no

checking intrin.h usability... no

checking intrin.h presence... no

checking for intrin.h... no

checking for inttypes.h... (cached) yes

checking for stdint.h... (cached) yes

checking for C/C++ restrict keyword... __restrict

checking for inline... inline

checking for an ANSI C-conforming const... yes

checking for pthread_create in -lpthread... yes

checking for pthread_yield... yes

checking if 100 threads can be run at once... yes

checking size of void *... 8

checking size of int... 4

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking if compiler rejects bogus asm statements... yes

checking for support for gcc x86/x86_64 bit primitives... yes

checking for support for gcc x86 bit primitives for pre-Pentium 4... yes

checking for support for gcc ia64 primitives... no

checking for support for gcc PowerPC atomics... no

checking for support for gcc SiCortex atomics... no

checking for support for gcc atomic intrinsics... yes

checking for support for Windows NT atomic intrinsics... no

checking for support for Sun atomic operations library... no

checking whether to enable strict fairness checks... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating test/Makefile

config.status: creating openpa.pc

config.status: creating src/config.h

config.status: executing src/opa_config.h commands

config.status: creating src/opa_config.h - prefix OPA for src/config.h
defines

config.status: executing depfiles commands

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx

configure: configuring subsystem in src/mpid/ch3

RUNNING CONFIGURE FOR CH3 DEVICE

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

16

checking assert.h usability... yes

checking assert.h presence... yes

checking for assert.h... yes

checking limits.h usability... yes

checking limits.h presence... yes

checking for limits.h... yes

checking for string.h... (cached) yes

checking for sys/types.h... (cached) yes

checking sys/uio.h usability... yes

checking sys/uio.h presence... yes

checking for sys/uio.h... yes

checking uuid/uuid.h usability... yes

checking uuid/uuid.h presence... yes

checking for uuid/uuid.h... yes

checking time.h usability... yes

checking time.h presence... yes

checking for time.h... yes

checking ctype.h usability... yes

checking ctype.h presence... yes

checking for ctype.h... yes

checking for unistd.h... (cached) yes

checking arpa/inet.h usability... yes

checking arpa/inet.h presence... yes

checking for arpa/inet.h... yes

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking for net/if.h... yes

checking for pid_t... yes

checking for inet_pton... yes

checking for gethostname... yes

checking whether gethostname needs a declaration... no

checking for CFUUIDCreate... no

checking for uuid_generate... no

checking for time... yes

checking whether CPP accepts variable length argument lists... yes

checking whether byte ordering is bigendian... no

checking whether we can use struct ifconf... yes

checking size of int... 4

checking size of long... 8

checking size of long long... 8

checking size of void *... 8

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating util/Makefile

config.status: creating util/shm/Makefile

config.status: creating util/shmbase/Makefile

config.status: creating channels/Makefile

config.status: creating util/ftb/Makefile

config.status: creating localdefs

config.status: creating include/mpid_thread.h

config.status: creating include/mpidi_ch3_conf.h

config.status: executing default-1 commands

copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c

=== configuring in channels/mrail
(/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation' 'LIBS= -lpthread'
'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src' --cache-file=/dev/null
--srcdir=.

RUNNING CONFIGURE FOR THE MRAIL CHANNEL

checking build system type... x86_64-unknown-linux-gnu

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking errno.h usability... yes

checking errno.h presence... yes

checking for errno.h... yes

checking for stdlib.h... (cached) yes

checking for unistd.h... (cached) yes

checking pthread.h usability... yes

checking pthread.h presence... yes

checking for pthread.h... yes

configure: checking for any hwloc installation...

checking for hwloc_topology_set_pid in -lhwloc... no

configure: No suitable hwloc installed, using internal version

checking for the InfiniBand includes path... /usr/local/include

checking for the InfiniBand library path... /usr/lib64

checking for library containing dlopen... -ldl

checking for library containing umad_init... -libumad

checking for library containing ibv_open_device... -libverbs

checking infiniband/umad.h usability... yes

checking infiniband/umad.h presence... yes

checking for infiniband/umad.h... yes

checking infiniband/verbs.h usability... yes

checking infiniband/verbs.h presence... yes

checking for infiniband/verbs.h... yes

checking whether to enable support for BLCR... no

checking whether to enable support for FTB-CR... no

checking whether to enable support for XRC... no

configure: checking for RDMA CM support...

checking for library containing rdma_create_event_channel... -lrdmacm

checking rdma/rdma_cma.h usability... yes

checking rdma/rdma_cma.h presence... yes

checking for rdma/rdma_cma.h... yes

configure: RDMA CM support enabled

checking whether to enable header caching... yes

checking whether to enable registration caching... yes

checking for snprintf... yes

checking whether snprintf needs a declaration... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating src/rdma/Makefile

config.status: creating src/gen2/Makefile

config.status: creating localdefs

config.status: creating include/mpidi_ch3i_rdma_conf.h

config.status: executing default-1 commands

Updating dependency directories .deps

=== configuring in src/hwloc
(/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/src/hwloc)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation' 'LIBS= -lpthread'
'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src' --cache-file=/dev/null
--srcdir=.

 

###

### Configuring hwloc distribution tarball

### Startup tests

###

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking target system type... x86_64-unknown-linux-gnu

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking how to create a ustar tar archive... gnutar

checking for hwloc version... 1.0.1rc3-1

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for style of include used by make... GNU

checking dependency style of gcc... gcc3

checking whether gcc and cc understand -c and -o together... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for pkg-config... /usr/bin/pkg-config

checking pkg-config is at least version 0.9.0... yes

 

###

### Configuring hwloc core

###

checking hwloc building mode... standalone

configure: hwloc builddir:
/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/src/hwloc

configure: hwloc srcdir:
/root/download/mvapich2-1.6rc2/src/mpid/ch3/channels/mrail/src/hwloc

checking if want hwloc maintainer support... checking for hwloc
directory prefix... (none)

checking for hwloc symbol prefix... hwloc_

checking for gcc option to accept ISO C99... -std=gnu99

checking minix/config.h usability... no

checking minix/config.h presence... no

checking for minix/config.h... no

checking whether it is safe to define __EXTENSIONS__... yes

checking size of void *... 8

checking which OS support to include... Linux

checking which CPU support to include... x86_64

checking whether diff accepts -u... -u

checking size of unsigned long... 8

checking size of unsigned int... 4

checking for __attribute__... yes

checking for __attribute__(aligned)... yes

checking for __attribute__(always_inline)... yes

checking for __attribute__(cold)... no

checking for __attribute__(const)... yes

checking for __attribute__(deprecated)... yes

checking for __attribute__(format)... no

checking for __attribute__(hot)... no

checking for __attribute__(malloc)... yes

checking for __attribute__(may_alias)... yes

checking for __attribute__(no_instrument_function)... yes

checking for __attribute__(nonnull)... no

checking for __attribute__(noreturn)... yes

checking for __attribute__(packed)... yes

checking for __attribute__(pure)... yes

checking for __attribute__(sentinel)... no

checking for __attribute__(unused)... yes

checking for __attribute__(warn_unused_result)... yes

checking for __attribute__(weak_alias)... yes

checking if gcc supports -fvisibility... yes

checking enable symbol visibility... yes

configure: WARNING: " -fvisibility=hidden" has been added to hwloc's
CFLAGS

checking for inline compatibility keyword... __inline__

checking for strncasecmp... yes

checking whether function strncasecmp is declared... yes

checking for stdint.h... (cached) yes

checking for wchar_t... yes

checking for putwc... yes

checking locale.h usability... yes

checking locale.h presence... yes

checking for locale.h... yes

checking for setlocale... yes

checking langinfo.h usability... yes

checking langinfo.h presence... yes

checking for langinfo.h... yes

checking for nl_langinfo... yes

checking curses.h usability... yes

checking curses.h presence... yes

checking for curses.h... yes

checking for term.h... yes

checking for library containing tparm... -lncursesw

checking for KAFFINITY... no

checking for PROCESSOR_CACHE_TYPE... no

checking for CACHE_DESCRIPTOR... no

checking for LOGICAL_PROCESSOR_RELATIONSHIP... no

checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no

checking for GROUP_AFFINITY... no

checking for PROCESSOR_RELATIONSHIP... no

checking for NUMA_NODE_RELATIONSHIP... no

checking for CACHE_RELATIONSHIP... no

checking for PROCESSOR_GROUP_INFO... no

checking for GROUP_RELATIONSHIP... no

checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no

checking for main in -lgdi32... no

checking windows.h usability... no

checking windows.h presence... no

checking for windows.h... no

checking sys/lgrp_user.h usability... no

checking sys/lgrp_user.h presence... no

checking for sys/lgrp_user.h... no

checking kstat.h usability... no

checking kstat.h presence... no

checking for kstat.h... no

checking infiniband/verbs.h usability... yes

checking infiniband/verbs.h presence... yes

checking for infiniband/verbs.h... yes

checking for main in -libverbs... yes

checking whether _SC_NPROCESSORS_ONLN is declared... yes

checking whether _SC_NPROCESSORS_CONF is declared... yes

checking whether _SC_NPROC_ONLN is declared... no

checking whether _SC_NPROC_CONF is declared... no

checking whether _SC_LARGE_PAGESIZE is declared... no

checking mach/mach_host.h usability... no

checking mach/mach_host.h presence... no

checking for mach/mach_host.h... no

checking mach/mach_init.h usability... no

checking mach/mach_init.h presence... no

checking for mach/mach_init.h... no

checking sys/param.h usability... yes

checking sys/param.h presence... yes

checking for sys/param.h... yes

checking for sys/sysctl.h... yes

checking whether CTL_HW is declared... no

checking whether HW_NCPU is declared... no

checking for sysctl... yes

checking for sysctlbyname... no

checking for pthread_t... yes

checking whether function sched_setaffinity is declared... yes

checking for old prototype of sched_setaffinity... no

checking for working CPU_SET... yes

checking for working CPU_SET_S... no

checking for KERRIGHED... no

checking for lib... no

checking for bash... /bin/sh

checking for ffs... yes

checking whether function ffs is declared... yes

checking for ffsl... yes

checking whether function ffsl is declared... yes

checking for fls... no

checking for flsl... no

checking for clz... no

checking for clzl... no

checking for openat... yes

checking whether numa_bitmask_alloc is declared... no

checking pthread_np.h usability... no

checking pthread_np.h presence... no

checking for pthread_np.h... no

checking whether pthread_setaffinity_np is declared... yes

checking whether pthread_getaffinity_np is declared... yes

checking for sched_setaffinity... yes

checking for sys/cpuset.h... no

checking for cpuid... yes

checking for X... libraries , headers 

 

###

### Configuring hwloc documentation

###

checking if this is a developer build... no (doxygen generation is
optional)

checking for doxygen... no

checking for pdflatex... /usr/bin/pdflatex

checking for makeindex... /usr/bin/makeindex

checking for fig2dev... no

checking if can build doxygen docs... no

checking for w3m... no

checking for lynx... no

checking if can build top-level README... no

checking if will build doxygen docs... no

checking if will install doxygen docs... no

checking whether to enable "picky" compiler mode... no (default)

 

###

### Configuring hwloc command line utilities

###

checking for CAIRO... yes

checking for cairo_fill... yes

checking for final CAIRO support... yes

checking for gethostbyname... yes

checking for connect... yes

checking for remove... yes

checking for shmat... yes

checking for IceConnectionNumber in -lICE... yes

checking for X11/Xlib.h... yes

checking X11/Xutil.h usability... yes

checking X11/Xutil.h presence... yes

checking for X11/Xutil.h... yes

checking for XOpenDisplay in -lX11... yes

checking X11/keysym.h usability... yes

checking X11/keysym.h presence... yes

checking for X11/keysym.h... yes

checking for XOpenDisplay in -lX11... (cached) yes

 

###

### Configuring hwloc tests

###

checking for a sed that does not truncate output... /bin/sed

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 98304

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking for /usr/bin/ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for ar... ar

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... yes

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes

checking whether -lc should be explicitly linked in... no

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating include/Makefile

config.status: creating src/Makefile

config.status: creating doc/Makefile

config.status: creating doc/doxygen-config.cfg

config.status: creating utils/Makefile

config.status: creating hwloc.pc

config.status: creating tests/Makefile

config.status: creating tests/linux/Makefile

config.status: creating tests/xml/Makefile

config.status: creating tests/ports/Makefile

config.status: creating tests/linux/gather-topology.sh

config.status: creating tests/linux/test-topology.sh

config.status: creating tests/xml/test-topology.sh

config.status: creating utils/test-hwloc-distrib.sh

config.status: creating include/private/config.h

config.status: creating include/hwloc/config.h

config.status: linking src/topology.c to tests/ports/topology.c

config.status: linking src/traversal.c to tests/ports/traversal.c

config.status: linking src/topology-synthetic.c to
tests/ports/topology-synthetic.c

config.status: linking src/topology-solaris.c to
tests/ports/topology-solaris.c

config.status: linking src/topology-aix.c to tests/ports/topology-aix.c

config.status: linking src/topology-osf.c to tests/ports/topology-osf.c

config.status: linking src/topology-windows.c to
tests/ports/topology-windows.c

config.status: linking src/topology-darwin.c to
tests/ports/topology-darwin.c

config.status: linking src/topology-freebsd.c to
tests/ports/topology-freebsd.c

config.status: linking src/topology-hpux.c to
tests/ports/topology-hpux.c

config.status: executing depfiles commands

config.status: executing chmoding-scripts commands

config.status: executing libtool commands

configure: configuring subsystem in src/mpid/common/locks

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

RUNNING CONFIGURE FOR LOCKS

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for ar... ar

checking for ranlib... ranlib

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for yield... no

checking for sched_yield... yes

checking for usleep... yes

checking for sleep... yes

checking for select... yes

checking for mutex_init... no

checking for compare_and_swap... no

checking for pthread_mutexattr_init... yes

checking for pthread_mutexattr_setpshared... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking pthread.h usability... yes

checking pthread.h presence... yes

checking for pthread.h... yes

checking sched.h usability... yes

checking sched.h presence... yes

checking for sched.h... yes

checking for inline... inline

checking for working volatile... yes

checking for an ANSI C-conforming const... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating mpid_locksconf.h

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: configuring subsystem in src/mpi/romio

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

Configuring with args --prefix=/share/apps/mvapich216
--with-ib-include=/usr/local/include --with-ib-libpath=/usr/lib64
--enable-g=dbg --enable-fast=none --disable-cxx CC=gcc
CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG
F90=/opt/pgi/linux86-64/10.5/bin/pgf90 CXX=cpp
--with-atomic-primitives=auto_allow_emulation

checking for architecture... LINUX

ROMIO home directory is /root/download/mvapich2-1.6rc2/src/mpi/romio

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether we are using the GNU Fortran 77 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes

checking how to run the C preprocessor... gcc -E

checking for memalign... yes

checking Fortran external names

Fortran externals have a trailing underscore and are lowercase

checking for inline... inline

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for unistd.h... (cached) yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking malloc.h usability... yes

checking malloc.h presence... yes

checking for malloc.h... yes

checking stddef.h usability... yes

checking stddef.h presence... yes

checking for stddef.h... yes

checking for sys/types.h... (cached) yes

checking for u_char... yes

checking for u_short... yes

checking for u_int... yes

checking for u_long... yes

checking sys/attr.h usability... no

checking sys/attr.h presence... no

checking for sys/attr.h... no

checking size of int... 4

checking size of void *... 8

checking for int large enough for pointers... no

checking size of long long... 8

checking for extension for Fortran 90 programs... f90

checking for Fortran 90 KIND parameter for 8-byte integers...
8

checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT...
yes

Overriding Array test for MPICH2

checking for weak symbol support... pragma weak

checking that weak symbols are visible to other files... yes

checking that the compiler correctly implements weak symbols... yes

checking whether struct flock compatible with MPI_Offset... yes

checking for pvfs2-config... notfound

checking configured file systems... testfs ufs nfs

configure: WARNING: File locks may not work with NFS.  See the
Installation and

users manual for instructions on testing and if necessary fixing this

checking for library containing aio_write... -lrt

checking signal.h usability... yes

checking signal.h presence... yes

checking for signal.h... yes

checking if aio.h exists and can be compiled... yes

checking if sys/aio.h exists and can be compiled... no

checking whether aio routines can be used... yes

checking for obsolete two-argument aio_write... no

checking for obsolete two-argument aio_suspend... no

checking for aio_fildes member of aiocb structure... yes

checking for aio_whence member of aiocb structure... no

checking for aio_handle member of aiocb structure... no

checking for aio_reqprio member of aiocb structure... yes

checking for aio_sigevent member of aiocb structure... yes

checking sys/vfs.h usability... yes

checking sys/vfs.h presence... yes

checking for sys/vfs.h... yes

checking sys/param.h usability... yes

checking sys/param.h presence... yes

checking for sys/param.h... yes

checking sys/mount.h usability... yes

checking sys/mount.h presence... yes

checking for sys/mount.h... yes

checking sys/statvfs.h usability... yes

checking sys/statvfs.h presence... yes

checking for sys/statvfs.h... yes

checking whether struct statfs properly defined... yes

checking for f_fstypename member of statfs structure... no

checking for sys/stat.h... (cached) yes

checking for sys/types.h... (cached) yes

checking for unistd.h... (cached) yes

checking for stat... yes

checking for st_fstype member of stat structure... no

checking for sys/types.h... (cached) yes

checking for sys/statvfs.h... (cached) yes

checking for sys/vfs.h... (cached) yes

checking for statvfs... yes

checking for f_basetype member of statvfs structure... no

checking for unistd.h... (cached) yes

checking for large file defines... yes

checking whether off64_t is an scalar type... yes

checking for strerror... yes

checking for doctext... false

checking for strdup... yes

checking whether strdup needs a declaration... no

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for lstat... yes

checking whether lstat needs a declaration... yes

checking for readlink... yes

checking whether readlink needs a declaration... no

checking for fsync... yes

checking whether fsync needs a declaration... no

checking for ftruncate... yes

checking whether ftruncate needs a declaration... no

checking for lseek64... yes

checking whether lseek64 needs a declaration... no

checking for unistd.h... (cached) yes

checking for large file defines... yes

setting SYSDEP_INC to 

checking for C/C++ restrict keyword... __restrict

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

setting CC to gcc

setting F77 to /opt/pgi/linux86-64/10.5/bin/pgf77

setting TEST_CC to /root/download/mvapich2-1.6rc2/bin/mpicc

setting TEST_F77 to /root/download/mvapich2-1.6rc2/bin/mpif77

setting CFLAGS to -DSPAWN_DEBUG -DMPISPAWN_DEBUG -g  -DFORTRANUNDERSCORE
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64

setting USER_CFLAGS to 

setting USER_FFLAGS to 

configure: creating ./config.status

config.status: creating Makefile

config.status: creating localdefs

config.status: creating mpi-io/Makefile

config.status: creating mpi2-other/info/Makefile

config.status: creating mpi2-other/array/Makefile

config.status: creating adio/common/Makefile

config.status: creating test/Makefile

config.status: creating test/misc.c

config.status: creating test/large_file.c

config.status: creating test/runtests

config.status: creating test-internal/Makefile

config.status: creating util/romioinstall

config.status: creating include/mpio.h

config.status: creating include/mpiof.h

config.status: creating adio/ad_nfs/Makefile

config.status: creating adio/ad_ufs/Makefile

config.status: creating adio/ad_bgl/Makefile

config.status: creating adio/ad_bglockless/Makefile

config.status: creating adio/ad_panfs/Makefile

config.status: creating adio/ad_xfs/Makefile

config.status: creating adio/ad_sfs/Makefile

config.status: creating adio/ad_pfs/Makefile

config.status: creating adio/ad_testfs/Makefile

config.status: creating adio/ad_pvfs/Makefile

config.status: creating adio/ad_pvfs2/Makefile

config.status: creating adio/ad_gridftp/Makefile

config.status: creating adio/ad_lustre/Makefile

config.status: creating adio/ad_zoidfs/Makefile

config.status: creating mpi-io/fortran/Makefile

config.status: creating mpi2-other/info/fortran/Makefile

config.status: creating mpi2-other/array/fortran/Makefile

config.status: creating test/fmisc.f

config.status: creating test/fcoll_test.f

config.status: creating test/pfcoll_test.f

config.status: creating test/fperf.f

config.status: creating mpi-io/glue/mpich2/Makefile

config.status: creating mpi-io/glue/mpich1/Makefile

config.status: creating mpi-io/glue/default/Makefile

config.status: creating common/dataloop/Makefile

config.status: creating adio/include/romioconf.h

config.status: executing default-1 commands

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: configuring subsystem in src/pmi/simple

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

RUNNING CONFIGURE FOR THE SIMPLE PMI

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for unistd.h... (cached) yes

checking for string.h... (cached) yes

checking for stdlib.h... (cached) yes

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking for strings.h... (cached) yes

checking assert.h usability... yes

checking assert.h presence... yes

checking for assert.h... yes

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for strncasecmp... yes

checking for sys/types.h... (cached) yes

checking sys/param.h usability... yes

checking sys/param.h presence... yes

checking for sys/param.h... yes

checking for sys/socket.h... (cached) yes

checking netinet/in.h usability... yes

checking netinet/in.h presence... yes

checking for netinet/in.h... yes

checking netinet/tcp.h usability... yes

checking netinet/tcp.h presence... yes

checking for netinet/tcp.h... yes

checking sys/un.h usability... yes

checking sys/un.h presence... yes

checking for sys/un.h... yes

checking netdb.h usability... yes

checking netdb.h presence... yes

checking for netdb.h... yes

checking for library containing socket... none required

checking for library containing gethostbyname... none required

checking for socket... yes

checking for setsockopt... yes

checking for gethostbyname... yes

checking whether socklen_t is defined (in sys/socket.h if present)...
yes

checking whether struct hostent contains h_addr_list... yes

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating localdefs

config.status: creating pmiconf.h

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: configuring subsystem in src/pm/mpd

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

Configuring with args --prefix=/share/apps/mvapich216
--with-ib-include=/usr/local/include --with-ib-libpath=/usr/lib64
--enable-g=dbg --enable-fast=none --disable-cxx CC=gcc
CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG
F90=/opt/pgi/linux86-64/10.5/bin/pgf90 CXX=cpp
--with-atomic-primitives=auto_allow_emulation

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether make sets $(MAKE)... yes

checking whether ln -s works... yes

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install /usr/bin/install -c works... yes

Using INSTALL=/usr/bin/install -c

checking for totalview... no

checking for python2.6... no

checking for python2.5... no

checking for python2.4... python2.4

checking for python2.3... no

checking for python2.2... no

checking for python2... python2

checking for python... python

checking that python2.4 is a valid python version... yes

checking that the cPickle module is available for python2.4... yes

checking for library containing socket... none required

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/wait.h that is POSIX.1 compatible... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking for strings.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking for stdlib.h... (cached) yes

checking sys/param.h usability... yes

checking sys/param.h presence... yes

checking for sys/param.h... yes

checking for putenv... yes

checking for socket... yes

checking for snprintf... yes

checking whether snprintf needs a declaration... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating mpdconf.h

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: configuring subsystem in src/pm/hydra

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-fast, --disable-cxx,
--with-atomic-primitives

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking for style of include used by make... GNU

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking dependency style of gcc... gcc3

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking size of unsigned long... 8

checking for gcc... (cached) gcc

checking whether we are using the GNU C compiler... (cached) yes

checking whether gcc accepts -g... (cached) yes

checking for gcc option to accept ISO C89... (cached) none needed

checking dependency style of gcc... (cached) gcc3

checking for size_t... yes

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for a sed that does not truncate output... /bin/sed

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 98304

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking for /usr/bin/ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for ar... ar

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... yes

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes

checking whether -lc should be explicitly linked in... no

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking for a BSD-compatible install... /usr/bin/install -c

checking for variable argument list macro functionality... yes

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking whether the compiler defines __func__... yes

checking whether the compiler defines __FUNC__... no

checking whether the compiler sets __FUNCTION__... yes

configure: ===== configuring mpl =====

configure: executing:
/root/download/mvapich2-1.6rc2/src/pm/hydra/mpl/configure
'--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
'--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
'--disable-cxx' 'CC=gcc' CFLAGS='-DSPAWN_DEBUG -DMPISPAWN_DEBUG '
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation' LDFLAGS='' LIBS=''
CPPFLAGS='-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for style of include used by make... GNU

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking dependency style of gcc... gcc3

checking for a sed that does not truncate output... /bin/sed

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 98304

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking for /usr/bin/ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for ar... ar

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking how to run the C preprocessor... gcc -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... yes

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... no

checking whether to build static libraries... yes

checking for gcc... (cached) gcc

checking whether we are using the GNU C compiler... (cached) yes

checking whether gcc accepts -g... (cached) yes

checking for gcc option to accept ISO C89... (cached) none needed

checking dependency style of gcc... (cached) gcc3

checking for an ANSI C-conforming const... yes

checking for C/C++ restrict keyword... __restrict

checking for variable argument list macro functionality... yes

checking stdio.h usability... yes

checking stdio.h presence... yes

checking for stdio.h... yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking stdarg.h usability... yes

checking stdarg.h presence... yes

checking for stdarg.h... yes

checking ctype.h usability... yes

checking ctype.h presence... yes

checking for ctype.h... yes

checking for inttypes.h... (cached) yes

checking for stdint.h... (cached) yes

checking valgrind.h usability... no

checking valgrind.h presence... no

checking for valgrind.h... no

checking memcheck.h usability... no

checking memcheck.h presence... no

checking for memcheck.h... no

checking valgrind/valgrind.h usability... no

checking valgrind/valgrind.h presence... no

checking for valgrind/valgrind.h... no

checking valgrind/memcheck.h usability... no

checking valgrind/memcheck.h presence... no

checking for valgrind/memcheck.h... no

checking helgrind.h usability... no

checking helgrind.h presence... no

checking for helgrind.h... no

checking valgrind/helgrind.h usability... no

checking valgrind/helgrind.h presence... no

checking for valgrind/helgrind.h... no

checking drd.h usability... no

checking drd.h presence... no

checking for drd.h... no

checking valgrind/drd.h usability... no

checking valgrind/drd.h presence... no

checking for valgrind/drd.h... no

checking whether the valgrind headers are broken or too old... yes

checking for strdup... yes

checking whether strdup needs a declaration... no

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for strncmp... yes

checking whether strncmp needs a declaration... no

checking for putenv... yes

checking whether putenv needs a declaration... no

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating localdefs

config.status: creating include/config.h

config.status: executing depfiles commands

config.status: executing libtool commands

config.status: executing include/mplconfig.h commands

config.status: creating include/mplconfig.h - prefix MPL for
include/config.h defines

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: ===== done with mpl configure =====

checking for doxygen... no

checking for unistd.h... (cached) yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking for strings.h... (cached) yes

checking stdarg.h usability... yes

checking stdarg.h presence... yes

checking for stdarg.h... yes

checking for sys/types.h... (cached) yes

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking sched.h usability... yes

checking sched.h presence... yes

checking for sched.h... yes

checking for sys/stat.h... (cached) yes

checking sys/param.h usability... yes

checking sys/param.h presence... yes

checking for sys/param.h... yes

checking netinet/in.h usability... yes

checking netinet/in.h presence... yes

checking for netinet/in.h... yes

checking netinet/tcp.h usability... yes

checking netinet/tcp.h presence... yes

checking for netinet/tcp.h... yes

checking sys/un.h usability... yes

checking sys/un.h presence... yes

checking for sys/un.h... yes

checking netdb.h usability... yes

checking netdb.h presence... yes

checking for netdb.h... yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking time.h usability... yes

checking time.h presence... yes

checking for time.h... yes

checking ifaddrs.h usability... yes

checking ifaddrs.h presence... yes

checking for ifaddrs.h... yes

checking arpa/inet.h usability... yes

checking arpa/inet.h presence... yes

checking for arpa/inet.h... yes

checking errno.h usability... yes

checking errno.h presence... yes

checking for errno.h... yes

checking poll.h usability... yes

checking poll.h presence... yes

checking for poll.h... yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking for netdb.h... (cached) yes

checking winsock2.h usability... no

checking winsock2.h presence... no

checking for winsock2.h... no

checking windows.h usability... no

checking windows.h presence... no

checking for windows.h... no

checking for socket in -lsocket... no

checking for gethostbyname in -lnsl... yes

checking for gettimeofday... yes

checking for time... yes

checking for strdup... yes

checking for sigaction... yes

checking for signal... yes

checking for usleep... yes

checking for alloca... no

checking for unsetenv... yes

checking for strerror... yes

checking for strsignal... yes

checking for stat... yes

checking for getifaddrs... yes

checking for fcntl... yes

checking for alarm... yes

checking for environ in unistd.h... no

checking for manually declared extern environ... yes

checking boot-strap server... ssh,rsh,fork,slurm,ll,lsf,sge,persist

checking resource management kernel... none,pbs

checking process manager... pmiserv

checking user interface... mpich

checking process binding library... hwloc,plpa

configure: ===== configuring tools/bind/hwloc/hwloc =====

configure: executing:
/root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/hwloc/hwloc/confi
gure  '--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
CFLAGS='-DSPAWN_DEBUG -DMPISPAWN_DEBUG '
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation' LDFLAGS=' -lnsl' LIBS=''
CPPFLAGS='-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

 

###

### Configuring hwloc distribution tarball

### Startup tests

###

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking target system type... x86_64-unknown-linux-gnu

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking how to create a ustar tar archive... gnutar

checking for hwloc version... 1.0.2rc3-1

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for style of include used by make... GNU

checking dependency style of gcc... gcc3

checking whether gcc and cc understand -c and -o together... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for pkg-config... /usr/bin/pkg-config

checking pkg-config is at least version 0.9.0... yes

 

###

### Configuring hwloc core

###

checking hwloc building mode... standalone

configure: hwloc builddir:
/root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/hwloc/hwloc

configure: hwloc srcdir:
/root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/hwloc/hwloc

checking if want hwloc maintainer support... disabled

checking for hwloc directory prefix... (none)

checking for hwloc symbol prefix... hwloc_

checking for gcc option to accept ISO C99... -std=gnu99

checking minix/config.h usability... no

checking minix/config.h presence... no

checking for minix/config.h... no

checking whether it is safe to define __EXTENSIONS__... yes

checking size of void *... 8

checking which OS support to include... Linux

checking which CPU support to include... x86_64

checking whether diff accepts -u... -u

checking size of unsigned long... 8

checking size of unsigned int... 4

checking for __attribute__... yes

checking for __attribute__(aligned)... yes

checking for __attribute__(always_inline)... yes

checking for __attribute__(cold)... no

checking for __attribute__(const)... yes

checking for __attribute__(deprecated)... yes

checking for __attribute__(format)... no

checking for __attribute__(hot)... no

checking for __attribute__(malloc)... yes

checking for __attribute__(may_alias)... yes

checking for __attribute__(no_instrument_function)... yes

checking for __attribute__(nonnull)... no

checking for __attribute__(noreturn)... yes

checking for __attribute__(packed)... yes

checking for __attribute__(pure)... yes

checking for __attribute__(sentinel)... no

checking for __attribute__(unused)... yes

checking for __attribute__(warn_unused_result)... yes

checking for __attribute__(weak_alias)... yes

checking if gcc supports -fvisibility... yes

checking enable symbol visibility... yes

configure: WARNING: " -fvisibility=hidden" has been added to hwloc's
CFLAGS

checking for inline compatibility keyword... __inline__

checking for strncasecmp... yes

checking whether function strncasecmp is declared... yes

checking for stdint.h... (cached) yes

checking for wchar_t... yes

checking for putwc... yes

checking locale.h usability... yes

checking locale.h presence... yes

checking for locale.h... yes

checking for setlocale... yes

checking langinfo.h usability... yes

checking langinfo.h presence... yes

checking for langinfo.h... yes

checking for nl_langinfo... yes

checking curses.h usability... yes

checking curses.h presence... yes

checking for curses.h... yes

checking for term.h... yes

checking for library containing tparm... -lncursesw

checking for KAFFINITY... no

checking for PROCESSOR_CACHE_TYPE... no

checking for CACHE_DESCRIPTOR... no

checking for LOGICAL_PROCESSOR_RELATIONSHIP... no

checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no

checking for GROUP_AFFINITY... no

checking for PROCESSOR_RELATIONSHIP... no

checking for NUMA_NODE_RELATIONSHIP... no

checking for CACHE_RELATIONSHIP... no

checking for PROCESSOR_GROUP_INFO... no

checking for GROUP_RELATIONSHIP... no

checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no

checking for main in -lgdi32... no

checking windows.h usability... no

checking windows.h presence... no

checking for windows.h... no

checking sys/lgrp_user.h usability... no

checking sys/lgrp_user.h presence... no

checking for sys/lgrp_user.h... no

checking kstat.h usability... no

checking kstat.h presence... no

checking for kstat.h... no

checking infiniband/verbs.h usability... yes

checking infiniband/verbs.h presence... yes

checking for infiniband/verbs.h... yes

checking for ibv_open_device in -libverbs... yes

checking whether _SC_NPROCESSORS_ONLN is declared... yes

checking whether _SC_NPROCESSORS_CONF is declared... yes

checking whether _SC_NPROC_ONLN is declared... no

checking whether _SC_NPROC_CONF is declared... no

checking whether _SC_LARGE_PAGESIZE is declared... no

checking mach/mach_host.h usability... no

checking mach/mach_host.h presence... no

checking for mach/mach_host.h... no

checking mach/mach_init.h usability... no

checking mach/mach_init.h presence... no

checking for mach/mach_init.h... no

checking sys/param.h usability... yes

checking sys/param.h presence... yes

checking for sys/param.h... yes

checking for sys/sysctl.h... yes

checking whether CTL_HW is declared... no

checking whether HW_NCPU is declared... no

checking for sysctl... yes

checking for sysctlbyname... no

checking for pthread_t... yes

checking whether function sched_setaffinity is declared... yes

checking for old prototype of sched_setaffinity... no

checking for working CPU_SET... yes

checking for working CPU_SET_S... no

checking for KERRIGHED... no

checking for lib... no

checking for bash... /bin/sh

checking for ffs... yes

checking whether function ffs is declared... yes

checking for ffsl... yes

checking whether function ffsl is declared... yes

checking for fls... no

checking for flsl... no

checking for clz... no

checking for clzl... no

checking for openat... yes

checking whether numa_bitmask_alloc is declared... no

checking pthread_np.h usability... no

checking pthread_np.h presence... no

checking for pthread_np.h... no

checking whether pthread_setaffinity_np is declared... yes

checking whether pthread_getaffinity_np is declared... yes

checking for sched_setaffinity... yes

checking for sys/cpuset.h... no

checking for library containing pthread_getthrds_np... no

checking for cpuid... yes

checking for X... libraries , headers 

 

###

### Configuring hwloc documentation

###

checking if this is a developer build... no (doxygen generation is
optional)

checking for doxygen... no

checking for pdflatex... /usr/bin/pdflatex

checking for makeindex... /usr/bin/makeindex

checking for fig2dev... no

checking if can build doxygen docs... no

checking for w3m... no

checking for lynx... no

checking if can build top-level README... no

checking if will build doxygen docs... no

checking if will install doxygen docs... no

checking whether to enable "picky" compiler mode... no (default)

 

###

### Configuring hwloc command line utilities

###

checking for CAIRO... yes

checking for cairo_fill... yes

checking for final CAIRO support... yes

checking for gethostbyname... yes

checking for connect... yes

checking for remove... yes

checking for shmat... yes

checking for IceConnectionNumber in -lICE... yes

checking for X11/Xlib.h... yes

checking X11/Xutil.h usability... yes

checking X11/Xutil.h presence... yes

checking for X11/Xutil.h... yes

checking for XOpenDisplay in -lX11... yes

checking X11/keysym.h usability... yes

checking X11/keysym.h presence... yes

checking for X11/keysym.h... yes

checking for XOpenDisplay in -lX11... (cached) yes

checking for XML... yes

checking for xmlNewDoc... yes

checking for final XML support... yes

checking for xmllint... xmllint

 

###

### Configuring hwloc tests

###

checking for a sed that does not truncate output... /bin/sed

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 98304

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking for /usr/bin/ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for ar... ar

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... no

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... no

checking whether to build static libraries... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating include/Makefile

config.status: creating src/Makefile

config.status: creating doc/Makefile

config.status: creating doc/doxygen-config.cfg

config.status: creating utils/Makefile

config.status: creating hwloc.pc

config.status: creating tests/Makefile

config.status: creating tests/linux/Makefile

config.status: creating tests/xml/Makefile

config.status: creating tests/ports/Makefile

config.status: creating tests/linux/gather-topology.sh

config.status: creating tests/linux/test-topology.sh

config.status: creating tests/xml/test-topology.sh

config.status: creating utils/test-hwloc-distrib.sh

config.status: creating include/private/config.h

config.status: creating include/hwloc/config.h

config.status: linking src/topology.c to tests/ports/topology.c

config.status: linking src/traversal.c to tests/ports/traversal.c

config.status: linking src/topology-synthetic.c to
tests/ports/topology-synthetic.c

config.status: linking src/topology-solaris.c to
tests/ports/topology-solaris.c

config.status: linking src/topology-aix.c to tests/ports/topology-aix.c

config.status: linking src/topology-osf.c to tests/ports/topology-osf.c

config.status: linking src/topology-windows.c to
tests/ports/topology-windows.c

config.status: linking src/topology-darwin.c to
tests/ports/topology-darwin.c

config.status: linking src/topology-freebsd.c to
tests/ports/topology-freebsd.c

config.status: linking src/topology-hpux.c to
tests/ports/topology-hpux.c

config.status: executing depfiles commands

config.status: executing chmoding-scripts commands

config.status: executing libtool commands

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: ===== done with tools/bind/hwloc/hwloc configure =====

configure: ===== configuring tools/bind/plpa/plpa =====

configure: executing:
/root/download/mvapich2-1.6rc2/src/pm/hydra/tools/bind/plpa/plpa/configu
re  '--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
CFLAGS='-DSPAWN_DEBUG -DMPISPAWN_DEBUG '
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation' LDFLAGS=' -lnsl' LIBS=''
CPPFLAGS='-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking for PLPA version... 1.3.2

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for style of include used by make... GNU

checking dependency style of gcc... gcc3

checking whether gcc and cc understand -c and -o together... yes

checking whether to enable "picky" compiler mode... no (default)

checking for flex... flex

checking lex output file root... lex.yy

checking lex library... -lfl

checking whether yytext is a pointer... yes

checking for bison... bison -y

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for syscall... yes

checking sys/syscall.h usability... yes

checking sys/syscall.h presence... yes

checking for sys/syscall.h... yes

checking for unistd.h... (cached) yes

checking for __NR_sched_setaffinity... yes

checking for __NR_sched_getaffinity... yes

checking for PLPA building mode... standalone

checking if want PLPA maintainer support... disabled

checking for PLPA config prefix... .

checking for PLPA symbol prefix... plpa_

checking valgrind/valgrind.h usability... no

checking valgrind/valgrind.h presence... no

checking for valgrind/valgrind.h... no

configure: WARNING: valgrind.h not found

checking whether to build PLPA executables... yes

checking for inline... inline

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for a sed that does not truncate output... /bin/sed

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 98304

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking for /usr/bin/ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for ar... ar

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... yes

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... no

checking whether to build static libraries... yes

configure: creating ./config.status

config.status: creating ./Makefile

config.status: creating ./config/Makefile

config.status: creating ./src/Makefile

config.status: creating ./src/libplpa/Makefile

config.status: creating ./src/plpa-info/Makefile

config.status: creating ./src/plpa-taskset/Makefile

config.status: creating ./src/libplpa/plpa_config.h

config.status: creating ./src/libplpa/plpa.h

config.status: executing depfiles commands

config.status: executing libtool commands

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: ===== done with tools/bind/plpa/plpa configure =====

checking if plpa works correctly... yes

checking checkpointing library... none

checking demux engine... poll,select,port

checking for poll... yes

checking for select... yes

checking debugging support... dbg

checking error checking... yes

checking warnings... no

checking profiling... yes

checking for strsignal... (cached) yes

checking whether strsignal needs a declaration... yes

checking for sigaction... (cached) yes

checking for signal... (cached) yes

checking for sigset... yes

checking for struct sigaction and sa_handler... yes

checking for gethostname... yes

checking whether gethostname needs a declaration... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating tools/bootstrap/src/bsci_init.c

config.status: creating tools/bootstrap/include/bsci.h

config.status: creating tools/rmk/src/rmki_init.c

config.status: creating tools/rmk/include/rmki.h

config.status: creating hydra-doxygen.cfg

config.status: creating include/hydra_config.h

config.status: executing depfiles commands

config.status: executing libtool commands

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-fast, --disable-cxx,
--with-atomic-primitives

configure: configuring subsystem in src/pm/gforker

RUNNING CONFIGURE FOR THE GFORKER PM

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install works... yes

checking whether mkdir -p works... yes

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for an ANSI C-conforming const... yes

checking for working volatile... yes

checking for C/C++ restrict keyword... __restrict

checking for inline... inline

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for strdup... yes

checking whether strdup needs a declaration... no

checking for setsid... yes

checking for isatty... yes

checking for getsid... yes

checking for library containing socketpair... none required

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for sys/types.h... (cached) yes

checking signal.h usability... yes

checking signal.h presence... yes

checking for signal.h... yes

checking sys/ptrace.h usability... yes

checking sys/ptrace.h presence... yes

checking for sys/ptrace.h... yes

checking for strsignal... yes

checking for sigaction... yes

checking for signal... yes

checking for sigset... yes

checking for struct sigaction... yes

checking for string.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking for stdlib.h... (cached) yes

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking wait.h usability... yes

checking wait.h presence... yes

checking for wait.h... yes

checking errno.h usability... yes

checking errno.h presence... yes

checking for errno.h... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating forkerconf.h

=== configuring in ../util
(/root/download/mvapich2-1.6rc2/src/pm/gforker/../util)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation' 'LDFLAGS= -L/usr/lib64 '
'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt   '
'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src' --cache-file=/dev/null
--srcdir=.

RUNNING CONFIGURE FOR THE PM UTILITIES

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for ar... ar

checking for ranlib... ranlib

checking for an ANSI C-conforming const... yes

checking for working volatile... yes

checking for C/C++ restrict keyword... __restrict

checking for inline... inline

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking for strtol... yes

checking for time... yes

checking for gettimeofday... yes

checking whether struct hostent contains h_addr_list... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for pid_t... yes

checking for setsid... yes

checking for isatty... yes

checking for getsid... yes

checking whether getsid is prototyped in unistd.h... no

checking for unsetenv... yes

checking for cygwin1.dll in /bin... yes

checking for environ in unistd.h... no

checking for extern environ in runtime... yes

checking for library containing socketpair... none required

checking for ANSI C header files... (cached) yes

checking for sys/types.h... (cached) yes

checking signal.h usability... yes

checking signal.h presence... yes

checking for signal.h... yes

checking sys/ptrace.h usability... yes

checking sys/ptrace.h presence... yes

checking for sys/ptrace.h... yes

checking sys/uio.h usability... yes

checking sys/uio.h presence... yes

checking for sys/uio.h... yes

checking for unistd.h... (cached) yes

checking whether struct iovec is defined in sys/uio.h... yes

checking for strsignal... yes

checking whether strsignal needs a declaration... yes

checking for snprintf... yes

checking for strdup... yes

checking for sigaction... yes

checking for signal... yes

checking for sigset... yes

checking for struct sigaction and sa_handler... yes

checking whether snprintf needs a declaration... no

checking whether strdup needs a declaration... no

checking for putenv... yes

checking whether putenv needs a declaration... no

checking for gethostname... yes

checking whether gethostname needs a declaration... no

checking for select... yes

checking sys/select.h usability... yes

checking sys/select.h presence... yes

checking for sys/select.h... yes

checking whether FD_ZERO works... yes

checking for sched_setaffinity... yes

checking for sched_getaffinity... yes

checking for bindprocessor... no

checking for thread_policy_set... no

checking whether cpu_set_t available... yes

checking whether the CPU_SET and CPU_ZERO macros are defined... no

checking for string.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking time.h usability... yes

checking time.h presence... yes

checking for time.h... yes

checking for stdlib.h... (cached) yes

checking sys/socket.h usability... yes

checking sys/socket.h presence... yes

checking for sys/socket.h... yes

checking wait.h usability... yes

checking wait.h presence... yes

checking for wait.h... yes

checking errno.h usability... yes

checking errno.h presence... yes

checking for errno.h... yes

checking whether socklen_t is defined (in sys/socket.h if present)...
yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating test/Makefile

config.status: creating pmutilconf.h

configure: configuring subsystem in src/mpe2

Configuring MPE Profiling System with  '--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

This MPE build is part of the MPICH2 build

checking for leftover Makefiles in subpackages ... none 

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether MPI_CC has been set ...
/root/download/mvapich2-1.6rc2/bin/mpicc 

checking whether we are using the GNU Fortran 77 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes

checking whether MPI_F77 has been set ...
/root/download/mvapich2-1.6rc2/bin/mpif77 

checking how to get verbose linking output from
/opt/pgi/linux86-64/10.5/bin/pgf77... -v

checking for Fortran 77 libraries of
/opt/pgi/linux86-64/10.5/bin/pgf77...  -L/usr/lib64
-L/opt/pgi/linux86-64/10.5/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
-lpthread -lrdmacm -libverbs -libumad -ldl -lrt -lpgftnrtl -lnspgc -lpgc
-lm

checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts the FLIBS
found by autoconf... yes

checking whether C can link with  -L/usr/lib64
-L/opt/pgi/linux86-64/10.5/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
-lpthread -lrdmacm -libverbs -libumad -ldl -lrt -lpgftnrtl -lnspgc -lpgc
-lm... yes

checking for linker for Fortran main programs... Use Fortran to link
programs

checking whether Fortran 77 and C objects are compatible... yes

checking for Fortran 77 name mangling... lower underscore

checking what libraries are needed to link Fortran programs with C
routines that use stdio... none

checking for Fortran 77 flag for library directories... -L

checking for include directory flag for Fortran... -I

checking how to run the C preprocessor... gcc -E

checking whether ln -s works... yes

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install works... yes

checking for ranlib... ranlib

checking whether install breaks libraries... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating sbin/mpetestlink

config.status: creating sbin/mpetestexec

config.status: creating sbin/mpetestexeclog

config.status: creating sbin/mpeinstall

config.status: creating sbin/mpecheckinstall

config.status: WARNING:  'sbin/mpecheckinstall.in' seems to ignore the
--datarootdir setting

config.status: creating sbin/mpecheckbuild

config.status: creating etc/mpe_help.conf

config.status: creating etc/mpe_f77env.conf

config.status: creating mpe_conf.h

config.status: executing default-1 commands

=== configuring in src/misc
(/root/download/mvapich2-1.6rc2/src/mpe2/src/misc)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

Configuring MPE Miscellaneous Library with  '--disable-option-checking'
'--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
'--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
'--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/misc

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for ar... ar

checking for ranlib... ranlib

checking whether gcc and cc understand -c and -o together... yes

checking how to run the C preprocessor... gcc -E

checking for dbx... no

checking for gdb... no

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for an ANSI C-conforming const... yes

checking for sysinfo... yes

checking for uname... yes

checking for gethostbyname... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for unistd.h... (cached) yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking netdb.h usability... yes

checking netdb.h presence... yes

checking for netdb.h... yes

checking sys/systeminfo.h usability... no

checking sys/systeminfo.h presence... no

checking for sys/systeminfo.h... no

checking for sys/types.h... (cached) yes

checking for sighandler_t... no

checking for kill... yes

checking whether kill needs a declaration... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating src/dbxerr.c

config.status: creating mpe_misc_conf.h

=== configuring in src/callstack
(/root/download/mvapich2-1.6rc2/src/mpe2/src/callstack)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

Configuring MPE CallStack Library with  '--disable-option-checking'
'--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
'--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
'--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/callstack

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for ar... ar

checking for ranlib... ranlib

checking whether gcc and cc understand -c and -o together... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for an ANSI C-conforming const... yes

checking for inline... inline

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking stdio.h usability... yes

checking stdio.h presence... yes

checking for stdio.h... yes

checking for string.h... (cached) yes

checking for unistd.h... (cached) yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking execinfo.h usability... yes

checking execinfo.h presence... yes

checking for execinfo.h... yes

checking whether <execinfo.h> defines backtrace_symbols_fd() ... yes

checking if <execinfo.h> links with -Wl,--export-dynamic ... yes

checking for fdopen... yes

checking whether fdopen needs a declaration... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating include/mpe_callstack.h

config.status: creating etc/mpe_callstack_ldflags.conf

config.status: creating mpe_callstack_conf.h

=== configuring in src/logging
(/root/download/mvapich2-1.6rc2/src/mpe2/src/logging)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

Configuring MPE Logging Library and Tools with
'--disable-option-checking' '--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/logging

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for ar... ar

checking for ranlib... ranlib

checking whether gcc and cc understand -c and -o together... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for an ANSI C-conforming const... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking whether byte ordering is bigendian... no

checking stdio.h usability... yes

checking stdio.h presence... yes

checking for stdio.h... yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking for unistd.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for sys/types.h... (cached) yes

checking sys/bitypes.h usability... yes

checking sys/bitypes.h presence... yes

checking for sys/bitypes.h... yes

checking for sys/stat.h... (cached) yes

checking fcntl.h usability... yes

checking fcntl.h presence... yes

checking for fcntl.h... yes

checking for header that defines C99 integer types, intXX_t ...
<stdint.h> 

checking for inttypes.h... (cached) yes

checking whether <inttypes.h> defines the PRIdXX macros ... yes

checking if <stdint.h> can be behind system headers ... yes

checking size of void *... 8

checking for address-sized integer ... CLOG_int64_t

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for gethostname... yes

checking whether gethostname needs a declaration... no

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for mkstemp... yes

checking whether mkstemp needs a declaration... no

checking for srand48... yes

checking whether srand48 needs a declaration... no

checking for lrand48... yes

checking whether lrand48 needs a declaration... no

checking for special C compiler options needed for large files... no

checking for _FILE_OFFSET_BITS value needed for large files... no

checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE 

checking for O_BINARY for open() ... no

checking pthread.h usability... yes

checking pthread.h presence... yes

checking for pthread.h... yes

checking for pthread_mutex_lock in -lpthread... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating include/clog_inttypes.h

config.status: creating include/mpi_null.h

config.status: creating include/mpe_log_thread.h

config.status: creating etc/mpe_log.conf

config.status: creating etc/mpe_nolog.conf

config.status: creating etc/mpe_log_postlib.conf

config.status: creating mpe_logging_conf.h

=== configuring in src/wrappers
(/root/download/mvapich2-1.6rc2/src/mpe2/src/wrappers)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

Configuring MPE Wrapper Libraries For MPI with
'--disable-option-checking' '--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/wrappers

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for ar... ar

checking for ranlib... ranlib

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for an ANSI C-conforming const... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking stdio.h usability... yes

checking stdio.h presence... yes

checking for stdio.h... yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking stdarg.h usability... yes

checking stdarg.h presence... yes

checking for stdarg.h... yes

checking for working alloca.h... yes

checking for alloca... yes

checking for stdarg is correct... yes

checking if compiler accepts prototypes ... yes

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for safe PMPI invocations ... no

checking for the value of MPI_STATUS_SIZE ... 5

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating test/Makefile

config.status: creating etc/mpe_f77env.conf

config.status: creating etc/mpe_mpilog.conf

config.status: creating etc/mpe_mpitrace.conf

config.status: creating mpe_wrappers_conf.h

=== configuring in src/graphics
(/root/download/mvapich2-1.6rc2/src/mpe2/src/graphics)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

Configuring MPE X Graphics Library with  '--disable-option-checking'
'--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
'--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
'--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/graphics

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for ar... ar

checking for ranlib... ranlib

checking whether gcc and cc understand -c and -o together... yes

checking how to run the C preprocessor... gcc -E

checking for X... libraries , headers 

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for an ANSI C-conforming const... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking size of void *... 8

checking for long pointer... yes

checking for system... yes

checking for unistd.h... (cached) yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating contrib/life/Makefile

config.status: creating contrib/mandel/Makefile

config.status: creating contrib/mastermind/Makefile

config.status: creating contrib/test/Makefile

config.status: creating etc/mpe_mpianim.conf

config.status: creating etc/mpe_graphics.conf

config.status: creating mpe_graphics_conf.h

=== configuring in src/collchk
(/root/download/mvapich2-1.6rc2/src/mpe2/src/collchk)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

Configuring MPE Collective and Datatype Checking Library with
'--disable-option-checking' '--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/collchk

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for ar... ar

checking for ranlib... ranlib

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for an ANSI C-conforming const... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking stdio.h usability... yes

checking stdio.h presence... yes

checking for stdio.h... yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking for unistd.h... (cached) yes

checking for working alloca.h... yes

checking for alloca... yes

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating test/Makefile

config.status: creating etc/mpe_mpicheck.conf

config.status: creating mpe_collchk_conf.h

=== configuring in src/slog2sdk
(/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk

Configuring SLOG2SDK with  '--disable-option-checking'
'--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
'--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
'--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install works... yes

checking if CLASSPATH is set... no, good to go

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for java in user's PATH... found /usr/java/latest/bin/java

checking if /usr/java/latest/bin/java runs simple java class... yes

checking if /usr/java/latest/bin/java runs simple jar file... yes

checking if /usr/java/latest/bin/java runs non-GUI tool... yes

checking if /usr/java/latest/bin/java runs simple Swing class... yes

checking if /usr/java/latest/bin/java runs simple Swing jar file... yes

checking for Java version... java full version "1.6.0_16-b01", i.e. Java
2 SDK

checking for cygpath... no

creating /root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/share

creating
/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/share/logfiles

creating sample logfiles from source

checking for leftover Makefiles in subpackages ... none 

configure: creating ./config.status

config.status: creating Makefile

config.status: creating sbin/install-package

config.status: creating bin/slog2print

config.status: creating bin/slog2navigator

config.status: creating bin/slog2filter

config.status: creating bin/slog2updater

config.status: creating bin/logconvertor

config.status: creating bin/jumpshot

config.status: creating bin/clogprint

config.status: creating bin/clogTOslog2

config.status: creating bin/clog2print

config.status: creating bin/clog2TOslog2

=== configuring in trace_rlog
(/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
--cache-file=/dev/null --srcdir=.

checking for current directory name...
/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog

Configuring TRACE_RLOG implementation with  '--disable-option-checking'
'--prefix=/share/apps/mvapich216' '--with-ib-include=/usr/local/include'
'--with-ib-libpath=/usr/lib64' '--enable-g=dbg' '--enable-fast=none'
'--disable-cxx' 'CC=gcc' 'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
'--with-atomic-primitives=auto_allow_emulation'
'MPI_CC=/root/download/mvapich2-1.6rc2/bin/mpicc'
'MPI_F77=/root/download/mvapich2-1.6rc2/bin/mpif77' 'LDFLAGS=
-L/usr/lib64 ' 'LIBS= -lpthread -lrdmacm -libverbs -libumad -ldl    -lrt
' 'CPPFLAGS=-I/usr/local/include
-I/root/download/mvapich2-1.6rc2/src/openpa/src
-I/root/download/mvapich2-1.6rc2/src/openpa/src'
'F77=/opt/pgi/linux86-64/10.5/bin/pgf77' 'FFLAGS= -g -L/usr/lib64 '
'--cache-file=/dev/null' '--srcdir=.'

checking gnumake... yes using --no-print-directory

checking BSD 4.4 make... no - whew

checking OSF V3 make... no

checking for virtual path format... VPATH

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for stdlib.h... (cached) yes

checking stdio.h usability... yes

checking stdio.h presence... yes

checking for stdio.h... yes

checking for string.h... (cached) yes

checking ctype.h usability... yes

checking ctype.h presence... yes

checking for ctype.h... yes

checking errno.h usability... yes

checking errno.h presence... yes

checking for errno.h... yes

checking for an ANSI C-conforming const... yes

checking size of void *... 8

checking size of int... 4

checking size of long... 8

checking size of long long... 8

checking size of __int64... 0

checking whether byte ordering is bigendian... no

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking for sed... sed

checking for a sed that does not truncate output... sed

checking for fgrep... /bin/grep -F

checking for ld used by gcc... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... yes

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B

checking the name lister (/usr/bin/nm -B) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 98304

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking for /usr/bin/ld option to reload object files... -r

checking how to recognize dependent libraries... pass_all

checking for ar... ar

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm -B output from gcc object... ok

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... no

checking for gcc option to produce PIC... -fPIC -DPIC

checking if gcc PIC flag -fPIC -DPIC works... yes

checking if gcc static flag -static works... no

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes

checking whether -lc should be explicitly linked in... no

checking dynamic linker characteristics... GNU/Linux ld.so

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... no

checking for malloc in -lefence... no

checking for strstr... yes

checking target system type... x86_64-unknown-linux-gnu

checking for javah in user's PATH... found /usr/java/latest/bin/javah

checking if /usr/java/latest exists... yes

checking for <jni.h> include flag... found -I/usr/java/latest/include
-I/usr/java/latest/include/linux

checking for <jni.h> usability... yes

checking for cygpath... no

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install works... yes

checking for ranlib... (cached) ranlib

checking whether install breaks libraries... no

creating directory
/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog/lib

creating
/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog/share

creating
/root/download/mvapich2-1.6rc2/src/mpe2/src/slog2sdk/trace_rlog/share/lo
gfiles

creating sample logfiles from source

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating sbin/install-package

config.status: creating bin/traceprint

config.status: creating bin/traceTOslog2

config.status: creating trace_impl.h

config.status: executing libtool commands

SLOG2SDK:  "trace_rlog" have been configured

MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers"
"src/graphics" "src/collchk" "src/slog2sdk" have been configured

checking size of OPA_ptr_t... 8

checking the sizeof MPI_Offset... 8

checking whether the Fortran Offset type works with Fortran77... yes

checking whether the Fortran Offset type works with Fortran90... yes

Running Configure for F90 Type routines

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx

checking for cc... gcc

checking whether the C compiler sets its return status correctly... yes

checking for an ANSI C-conforming const... no

checking that f works as the extension for Fortran 90 program... yes

checking for Fortran 90 compiler default output file name... a.out

checking whether the Fortran 90 compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU Fortran 90 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... yes

checking whether Fortran 90 accepts f90 suffix... yes

checking for precision and range of reals...  6 , 37

checking for precision and range of double precision...  15 , 307

checking for range of integers...  9

checking whether we are using the GNU Fortran 77 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes

checking for linker for Fortran main programs... Use Fortran to link
programs

checking for Fortran 77 name mangling... lower underscore

checking for available integer kinds and ranges...  2 , 1, 4 , 2, 9 , 4,
18 , 8,

 {  2 , 1 , 1 }, {  4 , 2 , 2 }, {  9 , 4 , 4 }, {  18 , 8 , 8 },

configure: creating ./config.status

config.status: creating mpif90model.h

configure: WARNING: unrecognized options: --with-ib-include,
--with-ib-libpath, --enable-g, --enable-fast, --disable-cxx

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating src/include/Makefile

config.status: creating src/include/mpich2info.h

config.status: creating mvapich2-doxygen

config.status: creating src/include/mpichtimer.h

config.status: creating src/binding/Makefile

config.status: creating src/binding/cxx/Makefile

config.status: creating src/binding/cxx/mpicxx.h

config.status: creating src/binding/f77/Makefile

config.status: creating src/binding/f77/mpif.h

config.status: creating src/binding/f77/setbotf.f

config.status: creating src/binding/f90/Makefile

config.status: creating src/binding/f90/mpi_sizeofs.f90

config.status: creating src/packaging/Makefile

config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc

config.status: creating src/packaging/pkgconfig/Makefile

config.status: creating src/packaging/envmods/mpich2.module

config.status: WARNING:  'src/packaging/envmods/mpich2.module.in' seems
to ignore the --datarootdir setting

config.status: creating src/packaging/envmods/Makefile

config.status: creating src/env/mpixxx_opts.conf

config.status: creating src/env/mpicc

config.status: creating src/env/mpicc.conf

config.status: creating src/env/mpicc.bash

config.status: creating src/env/mpicxx

config.status: creating src/env/mpicxx.conf

config.status: creating src/env/mpicxx.bash

config.status: creating src/env/mpif77

config.status: creating src/env/mpif77.conf

config.status: creating src/env/mpif77.bash

config.status: creating src/env/mpif90

config.status: creating src/env/mpif90.conf

config.status: creating src/env/mpif90.bash

config.status: creating src/env/parkill

config.status: creating src/env/Makefile

config.status: creating src/env/mpiname/Makefile

config.status: creating src/util/createshlib

config.status: creating src/mpi/Makefile

config.status: creating src/mpi/attr/Makefile

config.status: creating src/mpi/coll/Makefile

config.status: creating src/mpi/comm/Makefile

config.status: creating src/mpi/datatype/Makefile

config.status: creating src/mpi/debugger/Makefile

config.status: creating src/mpi/errhan/Makefile

config.status: creating src/mpi/group/Makefile

config.status: creating src/mpi/init/Makefile

config.status: creating src/mpi/misc/Makefile

config.status: creating src/mpi/pt2pt/Makefile

config.status: creating src/mpi/rma/Makefile

config.status: creating src/mpi/spawn/Makefile

config.status: creating src/mpi/timer/Makefile

config.status: creating src/mpi/topo/Makefile

config.status: creating src/mpid/Makefile

config.status: creating src/mpid/common/Makefile

config.status: creating src/mpid/common/datatype/Makefile

config.status: creating src/mpid/common/datatype/dataloop/Makefile

config.status: creating src/pm/Makefile

config.status: creating src/pmi/Makefile

config.status: creating src/pmi/simple/Makefile

config.status: creating src/nameserv/Makefile

config.status: creating src/nameserv/file/Makefile

config.status: creating src/nameserv/mpd/Makefile

config.status: creating src/nameserv/pmi/Makefile

config.status: creating src/nameserv/test/Makefile

config.status: creating src/util/Makefile

config.status: creating src/util/info/Makefile

config.status: creating src/util/instrm/Makefile

config.status: creating src/util/thread/Makefile

config.status: creating src/util/mem/Makefile

config.status: creating src/util/msgs/Makefile

config.status: creating src/util/param/Makefile

config.status: creating src/util/dbg/Makefile

config.status: creating src/util/dbg/getfuncstack

config.status: creating src/util/osserv/Makefile

config.status: creating src/util/procmap/Makefile

config.status: creating src/util/other/Makefile

config.status: creating src/include/mpi.h

config.status: creating test/Makefile

config.status: creating test/util/Makefile

config.status: creating test/basic/Makefile

config.status: creating test/commands/Makefile

config.status: creating test/commands/cmdtests

config.status: creating test/mpid/Makefile

config.status: creating test/mpid/ch3/Makefile

config.status: creating test/util/timer/Makefile

config.status: creating examples/Makefile

config.status: creating examples/f77/Makefile

config.status: creating examples/f90/Makefile

config.status: creating examples/cxx/Makefile

config.status: creating src/util/logging/Makefile

config.status: creating src/util/logging/common/Makefile

config.status: creating doc/Makefile

config.status: creating doc/mansrc/Makefile

config.status: creating doc/mansrc/createhtmlindex

config.status: creating src/include/mpichconf.h

config.status: executing default-1 commands

config.status: executing default-2 commands

config.status: executing default-3 commands

config.status: executing default-4 commands

config.status: executing default-5 commands

config.status: executing default-6 commands

config.status: executing default-7 commands

config.status: executing default-8 commands

Updating dependency directories .deps

config.status: executing default-9 commands

config.status: executing default-10 commands

config.status: executing default-11 commands

config.status: executing default-12 commands

config.status: executing default-13 commands

=== configuring in test/mpi (/root/download/mvapich2-1.6rc2/test/mpi)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
--cache-file=/dev/null --srcdir=.

RUNNING CONFIGURE FOR MPI TESTS

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether we are using the GNU Fortran 77 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf77 accepts -g... yes

checking that f works as the extension for Fortran 90 program... yes

checking whether we are using the GNU Fortran 90 compiler... no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g... yes

checking whether long double is supported... yes

checking whether long long is supported... yes

checking for an ANSI C-conforming const... yes

checking for C/C++ restrict keyword... __restrict

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for unistd.h... (cached) yes

checking stdarg.h usability... yes

checking stdarg.h presence... yes

checking for stdarg.h... yes

checking for string.h... (cached) yes

checking for stdlib.h... (cached) yes

checking for memory.h... (cached) yes

checking pthread.h usability... yes

checking pthread.h presence... yes

checking for pthread.h... yes

checking for library containing pthread_create... -lpthread

checking for library containing pthread_barrier_init... none required

checking for pthread_create... yes

checking for pthread_yield... yes

checking for pthread_barrier_init... yes

checking for pthread_barrier_wait... yes

Configuring tests for MVAPICH2

checking whether struct hostent contains h_addr_list... no

checking whether integer*4 is supported... yes

checking whether integer*8 is supported... yes

checking whether integer*16 is supported... yes

checking for Fortran 77 name mangling... lower underscore

checking for Fortran libraries needed for getarg... none needed

checking whether Fortran has pointer declaration... yes

checking that f works as the extension for Fortran 90 program... yes

checking whether we are using the GNU Fortran 90 compiler... (cached) no

checking whether /opt/pgi/linux86-64/10.5/bin/pgf90 accepts -g...
(cached) yes

checking for extension for Fortran 90 programs... f90

checking whether the Fortran 90 compiler
(/opt/pgi/linux86-64/10.5/bin/pgf90   -L/usr/lib64 ) works... yes

checking whether the Fortran 90 compiler
(/opt/pgi/linux86-64/10.5/bin/pgf90   -L/usr/lib64 ) is a
cross-compiler... no

checking whether Fortran 90 has Cray-style pointer declaration... yes

checking whether MPI_2DOUBLE_COMPLEX is available... no

checking size of void *... 8

checking size of int... 4

checking size of long... 8

checking size of long long... 8

checking size of short... 2

checking for C integer type of address size... long

checking for perl... /usr/bin/perl

configure: creating ./config.status

config.status: creating maint/testmerge

config.status: creating runtests

config.status: creating Makefile

config.status: creating basic/Makefile

config.status: creating attr/Makefile

config.status: creating util/Makefile

config.status: creating coll/Makefile

config.status: creating comm/Makefile

config.status: creating datatype/Makefile

config.status: creating errhan/Makefile

config.status: creating group/Makefile

config.status: creating info/Makefile

config.status: creating init/Makefile

config.status: creating pt2pt/Makefile

config.status: creating rma/Makefile

config.status: creating spawn/Makefile

config.status: creating topo/Makefile

config.status: creating io/Makefile

config.status: creating f77/Makefile

config.status: creating f77/attr/Makefile

config.status: creating f77/attr/attraints.h

config.status: creating f77/pt2pt/attr1aints.h

config.status: creating f77/ext/add1size.h

config.status: creating f77/datatype/Makefile

config.status: creating f77/datatype/typeaints.h

config.status: creating f77/util/Makefile

config.status: creating f77/coll/Makefile

config.status: creating f77/comm/Makefile

config.status: creating f77/topo/Makefile

config.status: creating f77/init/Makefile

config.status: creating f77/rma/addsize.h

config.status: creating f77/pt2pt/Makefile

config.status: creating f77/info/Makefile

config.status: creating f77/spawn/Makefile

config.status: creating f77/spawn/type1aint.h

config.status: creating f77/rma/Makefile

config.status: creating f77/ext/Makefile

config.status: creating f77/ext/testlist

config.status: creating f77/io/Makefile

config.status: creating f77/io/iooffset.h

config.status: creating f77/io/iodisp.h

config.status: creating f77/io/ioaint.h

config.status: creating f90/Makefile

config.status: creating f90/attr/Makefile

config.status: creating f90/datatype/Makefile

config.status: creating f90/f90types/Makefile

config.status: creating f90/util/Makefile

config.status: creating f90/coll/Makefile

config.status: creating f90/comm/Makefile

config.status: creating f90/topo/Makefile

config.status: creating f90/init/Makefile

config.status: creating f90/pt2pt/Makefile

config.status: creating f90/rma/Makefile

config.status: creating f90/info/Makefile

config.status: creating f90/spawn/Makefile

config.status: creating f90/timer/Makefile

config.status: creating f90/ext/Makefile

config.status: creating f90/ext/testlist

config.status: creating f90/io/Makefile

config.status: creating f90/misc/Makefile

config.status: creating cxx/Makefile

config.status: creating cxx/util/Makefile

config.status: creating cxx/attr/Makefile

config.status: creating cxx/pt2pt/Makefile

config.status: creating cxx/comm/Makefile

config.status: creating cxx/coll/Makefile

config.status: creating cxx/info/Makefile

config.status: creating cxx/datatype/Makefile

config.status: creating cxx/io/Makefile

config.status: creating cxx/init/Makefile

config.status: creating cxx/rma/Makefile

config.status: creating cxx/spawn/Makefile

config.status: creating threads/Makefile

config.status: creating threads/pt2pt/Makefile

config.status: creating threads/util/Makefile

config.status: creating threads/comm/Makefile

config.status: creating threads/init/Makefile

config.status: creating threads/spawn/Makefile

config.status: creating errors/Makefile

config.status: creating errors/attr/Makefile

config.status: creating errors/basic/Makefile

config.status: creating errors/coll/Makefile

config.status: creating errors/comm/Makefile

config.status: creating errors/faults/Makefile

config.status: creating errors/group/Makefile

config.status: creating errors/pt2pt/Makefile

config.status: creating errors/rma/Makefile

config.status: creating errors/spawn/Makefile

config.status: creating errors/topo/Makefile

config.status: creating errors/io/Makefile

config.status: creating errors/cxx/Makefile

config.status: creating errors/cxx/errhan/Makefile

config.status: creating errors/cxx/io/Makefile

config.status: creating errors/f77/Makefile

config.status: creating errors/f90/Makefile

config.status: creating manual/Makefile

config.status: creating manual/manyconnect

config.status: creating perf/Makefile

config.status: creating testlist

config.status: creating cxx/testlist

config.status: creating f77/testlist

config.status: creating f90/testlist

config.status: creating threads/testlist

config.status: creating errors/testlist

config.status: creating errors/cxx/testlist

config.status: creating include/mpitestconf.h

config.status: executing default-1 commands

config.status: executing default-2 commands

config.status: executing default-3 commands

=== configuring in src/pm/mpirun
(/root/download/mvapich2-1.6rc2/src/pm/mpirun)

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/share/apps/mvapich216'
'--with-ib-include=/usr/local/include' '--with-ib-libpath=/usr/lib64'
'--enable-g=dbg' '--enable-fast=none' '--disable-cxx' 'CC=gcc'
'CFLAGS=-DSPAWN_DEBUG -DMPISPAWN_DEBUG'
'F90=/opt/pgi/linux86-64/10.5/bin/pgf90' 'CXX=cpp'
--cache-file=/dev/null --srcdir=.

RUNNING CONFIGURE FOR THE MPIRUN PM

checking build system type... x86_64-unknown-linux-gnu

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install works... yes

checking whether mkdir -p works... yes

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... yes

checking how to run the C preprocessor... gcc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for library containing ceil... -lm

checking for strndup... yes

checking for get_current_dir_name... yes

checking whether to enable support for BLCR... no

configure: creating ./config.status

config.status: creating Makefile

config.status: creating include/mpirunconf.h

Configuration completed.

Bright Yang

Vaisala, Boulder

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