[mvapich-discuss] Error running test program after
MVAPICH2-1.4.1 installation
senthil.natesan at ndsu.edu
senthil.natesan at ndsu.edu
Sat May 15 16:24:30 EDT 2010
> Jonathan Perkins wrote:
> Just to check, did you install mvapich2 on all of the machines in the
> hostfile?
>
I installed mvapich2 on all compute nodes, but still I am getting the
following error.
mpirun_rsh -np 4 -hostfile hostlist pmemd -O -i min1.in -o min1.out -inf
min1info -p C0101sol.prmtop -c C0101sol.inpcrd -r C0101sol min1.rst
-ref C0101sol.inpcrd
****************************************
/usr/bin/xauth: error in locking authority file /home/senthil/.Xauthority
/usr/bin/xauth: error in locking authority file /home/senthil/.Xauthority
/usr/bin/xauth: error in locking authority file /home/senthil/.Xauthority
execv: No such file or directory
pmemd -O -i min1.in -o min1.out -inf min1info -p C0101sol.prmtop -c
C0101sol.inpcrd -r C0101solmin1.rst -ref C0101sol.inpcrd
execv: No such file or directory
pmemd execv: No such file or directory
pmemd -O -i min1.in -o min1.out -inf min1info -p C0101sol.prmtop -c
C0101sol.inpcrd -r C0101solmin1.rst -ref C0101sol.inpcrd
execv: No such file or directory
pmemd -O -i min1.in -o min1.out -inf min1info -p C0101sol.prmtop -c
C0101sol.inpcrd -r C0101solmin1.rst -ref C0101sol.inpcrd
MPI process (rank: 1) terminated unexpectedly on compute-0-1.local
-O -i min1.in -o min1.out -inf min1info MPI process (rank: 2) terminated
unexpectedly on compute-0-2.local
-p Exit code -5 signaled from compute-0-1
C0101sol.prmtop MPI process (rank: 3) terminated unexpectedly on
compute-0-3.local
-c C0101sol.inpcrd -r C0101solmin1.rst -ref C0101sol.inpcrd
MPI process (rank: 0) terminated unexpectedly on compute-0-0.local
*******************************************************
The same program runs fine with mpiexec (from mvapich2). The submitting
script as follows.
mpdboot -v -n 5 --ifhn=craycx1 -f mpd.hosts
mpiexec -machinefile hostlist -np 4 pmemd -O -i min1.in -o min1.out -inf
min1info -p C0101sol.prmtop -c C0101sol .inpcrd -r C0101solmin1.rst
-ref C0101sol.inpcrd
mpdallexit
Thanks in advance for your suggestions.
Senthil Natesan
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