[mvapich-discuss] Problem Compiling MVAPICH2 using PGICompilers

[Karl W. Schulz]

Have you tried adding "-D_GNU_SOURCE" to your CFLAGS?  Not sure if  
that's the issue here, but we did have to do this to get a PGI build  
setup locally.

Karl

On Jun 30, 2009, at 10:56 AM, Saurabh Barve wrote:

> On Mon, Jun 29, 2009 at 10:16:01PM -0700, Saurabh Barve wrote:
>> Hi,
>>
>> I'm trying to build MVAPICH2 (mvapich2-1.4rc1) on a CentOS Linux
>> machine, and am running into errors.
>>
>> Here is how I run the configure script:
>>
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> CC=pgcc CXX=pgCC F77=pgf77 F90=pgf90 CFLAGS="-D_X86_64_ -D_SMP_ -
>> DCH_PSM" LIBS="-lpthread -lpsm_infinipath" ./configure --enable-f77  
>> --
>> enable-f90 --enable-cxx --with-device=ch3:psm --with-arch=LINUX -- 
>> with-
>> romio --without-mpe --prefix=/opt/mvapich2/pgi
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
> Don't set CFLAGS or LIBS, this is taken care of by the supplied
> configure options.  There is also shouldn't be a need to specify the
> arch.
>
> Do you get the same error with the following command?
>
> ./configure --with-device=ch3:psm --with-romio --without-mpe -- 
> prefix=/opt/mvapich2/pgi
> CC=pgcc CXX=pgCC F77=pgf77 F90=pgf90
>
>>
>>
>> This is the error I get when I run 'make':
>>
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> ...
>> ...
>> make[4]: Leaving directory `/usr/src/redhat/SOURCES/mvapich2/pgi/
>> mvapich2-1.4rc1/src/pm/mpirun'
>> make[3]: Leaving directory `/usr/src/redhat/SOURCES/mvapich2/pgi/
>> mvapich2-1.4rc1/src/pm'
>> make[2]: Leaving directory `/usr/src/redhat/SOURCES/mvapich2/pgi/
>> mvapich2-1.4rc1/src/pm'
>> make[1]: Leaving directory `/usr/src/redhat/SOURCES/mvapich2/pgi/
>> mvapich2-1.4rc1/src'
>> make[1]: Entering directory `/usr/src/redhat/SOURCES/mvapich2/pgi/
>> mvapich2-1.4rc1/examples'
>> ../bin/mpicc   -o cpi cpi.o  -lm
>> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/lib/
>> libmpich.a(mpid_irecv.o): In function `MPID_Irecv':
>> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
>> src/
>> mpid_irecv.c:84: undefined reference to `MPIDI_CH3_iRecv'
>> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
>> src/
>> mpid_irecv.c:90: undefined reference to `MPIDI_CH3_iRecv'
>> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/lib/
>> libmpich.a(mpid_recv.o): In function `MPID_Recv':
>> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
>> src/
>> mpid_recv.c:62: undefined reference to `MPIDI_CH3_Recv'
>> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
>> src/
>> mpid_recv.c:72: undefined reference to `MPIDI_CH3_Recv'
>> make[1]: *** [cpi] Error 2
>> make[1]: Leaving directory `/usr/src/redhat/SOURCES/mvapich2/pgi/
>> mvapich2-1.4rc1/examples'
>> make: *** [all-redirect] Error 2
>>
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>>
>>
>> More details about the system I'm using:
>>
>> 1) Operating System - CentOS Linux 5.0
>>
>> 2) Kernel version - 2.6.18-8.1.14.el5
>>
>> 3) PGI Compiler Suite - Version 8.0-2
>>
>> 4) MVAPICH2 version 1.4rc1
>>
>> MVAPICH2 builds fine for me when I use the Intel compilers (icc,  
>> icpc,
>> ifort) and use the same configure options as above.
>>
>> What am I doing wrong?
>>
>> Thanks,
>> Saurabh
>> --
>
>
> Jonathan,
>
> I get the same error when I try to use your configure command and  
> then run
> 'make':
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> ../bin/mpicc -I../src/include -I../src/include -c cpi.c
> ../bin/mpicc   -o cpi cpi.o  -lm
> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/lib/ 
> libmpich.a(mpid_irecv.o):
> In function `MPID_Irecv':
> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
> src/mpid_irecv.c:84:
> undefined reference to `MPIDI_CH3_iRecv'
> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
> src/mpid_irecv.c:90:
> undefined reference to `MPIDI_CH3_iRecv'
> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/lib/ 
> libmpich.a(mpid_recv.o):
> In function `MPID_Recv':
> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
> src/mpid_recv.c:62:
> undefined reference to `MPIDI_CH3_Recv'
> /usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/src/mpid/ch3/ 
> src/mpid_recv.c:72:
> undefined reference to `MPIDI_CH3_Recv'
> make[1]: *** [cpi] Error 2
> make[1]: Leaving directory
> `/usr/src/redhat/SOURCES/mvapich2/pgi/mvapich2-1.4rc1/examples'
> make: *** [all-redirect] Error 2
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
> -Saurabh
> --------------------------------------------------
> From: "Jonathan Perkins" <perkinjo at cse.ohio-state.edu>
> Sent: Tuesday, June 30, 2009 5:00 AM
> To: "Saurabh Barve" <saurabh.barve at gmail.com>
> Cc: <mvapich-discuss at cse.ohio-state.edu>
> Subject: Re: [mvapich-discuss] Problem Compiling MVAPICH2 using  
> PGICompilers
>
>
>
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