[mvapich-discuss] Build error with mvapich2-1.4-RC1-3378

Thu Jun 4 15:49:24 EDT 2009

On Thu, Jun 04, 2009 at 02:12:46PM -0400, Jonathan Perkins wrote:
> On Thu, Jun 04, 2009 at 11:36:48AM -0600, Jonathan G. Atencio wrote:
> > I am running RHEl4 with Infiniband. I see similar errors as well.
> 
> This may be a rhel4 specific issue.  Can Nathan and Le provide details
> of their OS as well as cpu architecture?

We've reproduced the error on rhel4 machine and found a couple 
resolutions.  Let me suggest that users on rhel4 add '-D_GNU_SOURCE' to
their CFLAGS until we provide a new version that takes care of this 
internally.

The following should work...
% ./configure CFLAGS='-D_GNU_SOURCE'
% make

> 
> > 
> > If I pass "-D_XOPEN_SOURCE=600" to my CFLAGS, then run configure, I am
> > able to get past the original error, however, I encounter another
> > error:
> > 
> > % export CFLAGS="-D_XOPEN_SOURCE=600"
> > % ./configure
> > ...
> > % make
> > ...
> > gcc -DHAVE_CONFIG_H -I. -I.
> > -I/home/atencio/mvapich2-1.4rc1/src/pm/mpirun/include
> > -D_XOPEN_SOURCE=600 -DNDEBUG -O2
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
> > -I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks -c
> > mpispawn_tree.c
> > mpispawn_tree.c: In function `mpispawn_tree_init':
> > mpispawn_tree.c:176: error: `fd_set' undeclared (first use in this function)
> > mpispawn_tree.c:176: error: (Each undeclared identifier is reported only once
> > mpispawn_tree.c:176: error: for each function it appears in.)
> > mpispawn_tree.c:176: error: syntax error before "set"
> > mpispawn_tree.c:177: error: storage size of 'tv' isn't known
> > mpispawn_tree.c:191: error: `set' undeclared (first use in this function)
> > make[3]: *** [mpispawn_tree.o] Error 1
> > make[3]: Leaving directory `/mscf/home/atencio/mvapich2-1.4rc1/src/pm/mpirun'
> > make[2]: *** [all-redirect] Error 2
> > make[2]: Leaving directory `/mscf/home/atencio/mvapich2-1.4rc1/src/pm'
> > make[1]: *** [all-redirect] Error 2
> > make[1]: Leaving directory `/mscf/home/atencio/mvapich2-1.4rc1/src'
> > make: *** [all-redirect] Error 2
> > 
> > 
> > Regards,
> > 
> > Jonathan
> > 
> > On Thu, Jun 4, 2009 at 10:34 AM, Le Yan <lyan1 at cct.lsu.edu> wrote:
> > > Hi there,
> > >
> > > I have exactly the same error with GNU and Intel compilers, at the very
> > > beginning though. The building options are the same, except the "slurm"
> > > part.
> > >
> > > Cheers,
> > > Le
> > >
> > > On Wed, 2009-06-03 at 13:43 -0600, Nathan Baca wrote:
> > >> Hello,
> > >>
> > >> I am trying to build the new release candidate and am getting a
> > >> consistent build error. It seems to happen at the very end of the
> > >> build and has failed with: gcc3.4, gcc4.1, intel10.1.015, and
> > >> pathscale3.2. The same build process successfully builds
> > >> mvapich2-1.2p1. Anybody else seen this?
> > >>
> > >> My configure line and error is as follows:
> > >>
> > >> ./configure --prefix=1.4rc1-pathscale-3.2 --with-slurm=/opt/hptc/slurm
> > >> --enable-romio --with-file-system=lustre CC=pathcc CXX=pathCC
> > >> F77=pathf90 FC=pathf90
> > >>
> > >> make[5]: Entering directory
> > >> `/ram/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks'
> > >> pathcc -DHAVE_CONFIG_H -I. -I. -I. -I../../../include
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/include -DNDEBUG -O2
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/datatype
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/datatype
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks
> > >> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2 -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2 -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks -c mpidu_process_locks.c
> > >> In file included
> > >> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/ibv_param.h:18,
> > >>
> > >> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/vbuf.h:32,
> > >>
> > >> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/mpidi_ch3_rdma_pre.h:23,
> > >>
> > >> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include/mpidi_ch3_pre.h:23,
> > >>
> > >> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include/mpidpre.h:43,
> > >>                  from ../../../include/mpiimpl.h:115,
> > >>
> > >> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include/mpidimpl.h:36,
> > >>                  from mpidu_process_locks.h:32,
> > >>                  from mpidu_process_locks.c:6:
> > >> /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/../rdma/coll_shmem.h:100: error: syntax error before "pthread_spinlock_t"
> > >>
> > >>
> > >> --
> > >> Nathan Baca
> > >> nathan.baca at gmail.com
> > >> _______________________________________________
> > >> mvapich-discuss mailing list
> > >> mvapich-discuss at cse.ohio-state.edu
> > >> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
> > >
> > > _______________________________________________
> > > mvapich-discuss mailing list
> > > mvapich-discuss at cse.ohio-state.edu
> > > http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
> > >
> > 
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> 
> -- 
> Jonathan Perkins
> http://www.cse.ohio-state.edu/~perkinjo

-- 
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo
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