[mvapich-discuss] Build error with mvapich2-1.4-RC1-3378

Thu Jun 4 13:36:48 EDT 2009

I am running RHEl4 with Infiniband. I see similar errors as well.

If I pass "-D_XOPEN_SOURCE=600" to my CFLAGS, then run configure, I am
able to get past the original error, however, I encounter another
error:

% export CFLAGS="-D_XOPEN_SOURCE=600"
% ./configure
...
% make
...
gcc -DHAVE_CONFIG_H -I. -I.
-I/home/atencio/mvapich2-1.4rc1/src/pm/mpirun/include
-D_XOPEN_SOURCE=600 -DNDEBUG -O2
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/datatype
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
-I/home/atencio/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks
-I/home/atencio/mvapich2-1.4rc1/src/mpid/common/locks -c
mpispawn_tree.c
mpispawn_tree.c: In function `mpispawn_tree_init':
mpispawn_tree.c:176: error: `fd_set' undeclared (first use in this function)
mpispawn_tree.c:176: error: (Each undeclared identifier is reported only once
mpispawn_tree.c:176: error: for each function it appears in.)
mpispawn_tree.c:176: error: syntax error before "set"
mpispawn_tree.c:177: error: storage size of 'tv' isn't known
mpispawn_tree.c:191: error: `set' undeclared (first use in this function)
make[3]: *** [mpispawn_tree.o] Error 1
make[3]: Leaving directory `/mscf/home/atencio/mvapich2-1.4rc1/src/pm/mpirun'
make[2]: *** [all-redirect] Error 2
make[2]: Leaving directory `/mscf/home/atencio/mvapich2-1.4rc1/src/pm'
make[1]: *** [all-redirect] Error 2
make[1]: Leaving directory `/mscf/home/atencio/mvapich2-1.4rc1/src'
make: *** [all-redirect] Error 2

Regards,

Jonathan

On Thu, Jun 4, 2009 at 10:34 AM, Le Yan <lyan1 at cct.lsu.edu> wrote:
> Hi there,
>
> I have exactly the same error with GNU and Intel compilers, at the very
> beginning though. The building options are the same, except the "slurm"
> part.
>
> Cheers,
> Le
>
> On Wed, 2009-06-03 at 13:43 -0600, Nathan Baca wrote:
>> Hello,
>>
>> I am trying to build the new release candidate and am getting a
>> consistent build error. It seems to happen at the very end of the
>> build and has failed with: gcc3.4, gcc4.1, intel10.1.015, and
>> pathscale3.2. The same build process successfully builds
>> mvapich2-1.2p1. Anybody else seen this?
>>
>> My configure line and error is as follows:
>>
>> ./configure --prefix=1.4rc1-pathscale-3.2 --with-slurm=/opt/hptc/slurm
>> --enable-romio --with-file-system=lustre CC=pathcc CXX=pathCC
>> F77=pathf90 FC=pathf90
>>
>> make[5]: Entering directory
>> `/ram/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks'
>> pathcc -DHAVE_CONFIG_H -I. -I. -I. -I../../../include
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/include -DNDEBUG -O2
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/datatype
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/datatype
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks
>> -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2 -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2 -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks -I/tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/common/locks -c mpidu_process_locks.c
>> In file included
>> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/ibv_param.h:18,
>>
>> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/vbuf.h:32,
>>
>> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/mpidi_ch3_rdma_pre.h:23,
>>
>> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/include/mpidi_ch3_pre.h:23,
>>
>> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include/mpidpre.h:43,
>>                  from ../../../include/mpiimpl.h:115,
>>
>> from /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/include/mpidimpl.h:36,
>>                  from mpidu_process_locks.h:32,
>>                  from mpidu_process_locks.c:6:
>> /tmp/mvapich2-build/mvapich2-1.4rc1/src/mpid/ch3/channels/mrail/src/gen2/../rdma/coll_shmem.h:100: error: syntax error before "pthread_spinlock_t"
>>
>>
>> --
>> Nathan Baca
>> nathan.baca at gmail.com
>> _______________________________________________
>> mvapich-discuss mailing list
>> mvapich-discuss at cse.ohio-state.edu
>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>
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