[mvapich-discuss] Problem compiling gromacs-4.0.5 against mvapich2-1.4rc1

[Jonathan Perkins]

On Tue, Jul 14, 2009 at 12:23:11PM -0400, Jerry Leahy wrote:
> /usr/local/lib/libmpich.a(ibv_channel_manager.o):(.bss+0x10): multiple
> definition of `debug'
> <..snip..>/gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.a(gmx_fatal.o):(.bss+0x0):
> first defined here
> collect2: ld returned 1 exit status
> make[3]: *** [grompp] Error 1
> 
> It looks like 'debug' is conflicting in both MVAPICH2 and in Gromacs.
> 
> Any suggestions?

We've committed a change to our source this morning that changes this
definition of debug to static so that this shouldn't cause any conflicts
in the shared namespace.  Can you try building the latest from trunk and
confirm that this resolves your problem?

-- 
Jonathan Perkins
http://www.cse.ohio-state.edu/~perkinjo
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