[mvapich-discuss] Can't charm++ with mpicxx

[Bjoern Olausson]

Hi all,

it's my first post here and it starts with a curiouse problem.
I can successfully compile v1.2, v1.4rc1 and v1.4_trunk, but the resulting 
mpicc bin fails to compile charm++.

Version 1.1 fails to compile itself.

Chao Mei told met that those might be related to "multiple definitions" during 
the linking stage. Google comes up with the following: 
http://software.intel.com/en-us/forums/intel-c-compiler/topic/46414/

Please find attached the build logs:


mvapich-1.1.log
http://daten-transport.de/download.php?id=baknrBs6wNkv&dateinummer=4305
--------------------------------------------------------------------------------
viainit.c(1417): warning #167: argument of type "void *" is incompatible with 
parameter of type "void *(*)(void *)"
              (void *) async_thread, (void *) viadev.context);
              ^

compilation aborted for viainit.c (code 2)
make[3]: *** [viainit.o] Error 2
Exit status from make was 2
make[2]: *** [mpilib] Error 1
make[1]: *** [mpi-modules] Error 2
make: *** [mpi] Error 2
--------------------------------------------------------------------------------



mvapich2-1.2p1.log
http://daten-transport.de/download.php?id=baknrBs6wNkv&dateinummer=4304
--------------------------------------------------------------------------------
Compiles correctly, but I cant compile charm++ with it.
See the following charm++ log

charm++2.6.3_mpi-linux-x86_64-mvapich2-1.2p1.log
http://daten-transport.de/download.php?id=baknrBs6wNkv&dateinummer=4300
--------------------------------------------------------------------------------
xi-symbol.h(1281): warning #592: variable "rtn" is used before its value is 
set
        if (next) { rtn += next->genAccels_spe_c_funcBodies(str); }
                    ^

../bin/charmc -host  -language c++ -cp ../bin/ -o charmxi xi-main.o xi-
symbol.o xi-grammar.tab.o xi-scan.o xi-util.o sdag-globals.o CSdagConstruct.o 
CEntry.o
/cvos/shared/apps/mvapich2/intel/64/1.2_custom/lib/libmpich.a(parser.o):
(.bss+0x18): multiple definition of `yyin'
xi-scan.o:(.bss+0x38): first defined here
/cvos/shared/apps/mvapich2/intel/64/1.2_custom/lib/libmpich.a(parser.o):
(.bss+0x20): multiple definition of `yyout'
xi-scan.o:(.bss+0x40): first defined here
ld: Warning: alignment 8 of symbol `yylval' in xi-grammar.tab.o is smaller 
than 32 in 
/cvos/shared/apps/mvapich2/intel/64/1.2_custom/lib/libmpich.a(tokens.o)
Fatal Error by charmc in directory /root/NAMD_2.7b1_Source/charm-6.1.2/mpi-
linux-x86_64-mpicxx/tmp
   Command mpicxx -o charmxi xi-main.o xi-symbol.o xi-grammar.tab.o xi-scan.o 
xi-util.o sdag-globals.o CSdagConstruct.o CEntry.o -L../bin/../lib returned 
error code 1
charmc exiting...
gmake[1]: *** [../bin/charmxi] Error 1
gmake[1]: Leaving directory `/root/NAMD_2.7b1_Source/charm-6.1.2/mpi-linux-
x86_64-mpicxx/tmp'
gmake: *** [headers] Error 2
--------------------------------------------------------------------------------



mvapich2-1.4_trunk-20090812.log
http://daten-transport.de/download.php?id=baknrBs6wNkv&dateinummer=4303
--------------------------------------------------------------------------------
Compiles correctly, but I cant compile charm++ with it.
See the following charm++ log
--------------------------------------------------------------------------------

charm++2.6.3_mpi-linux-x86_64-mvapich2-1.4_trunk-20090812.log
http://daten-transport.de/download.php?id=baknrBs6wNkv&dateinummer=4302
--------------------------------------------------------------------------------
xi-symbol.h(1281): warning #592: variable "rtn" is used before its value is 
set
        if (next) { rtn += next->genAccels_spe_c_funcBodies(str); }
                    ^

../bin/charmc -host  -language c++ -cp ../bin/ -o charmxi xi-main.o xi-
symbol.o xi-grammar.tab.o xi-scan.o xi-util.o sdag-globals.o CSdagConstruct.o 
CEntry.o
/cvos/shared/apps/mvapich2/intel/64/1.4/20090812/lib/libmpich.a(parser.o):
(.bss+0x18): multiple definition of `yyin'
xi-scan.o:(.bss+0x38): first defined here
/cvos/shared/apps/mvapich2/intel/64/1.4/20090812/lib/libmpich.a(parser.o):
(.bss+0x20): multiple definition of `yyout'
xi-scan.o:(.bss+0x40): first defined here
ld: Warning: alignment 8 of symbol `yylval' in xi-grammar.tab.o is smaller 
than 32 in 
/cvos/shared/apps/mvapich2/intel/64/1.4/20090812/lib/libmpich.a(tokens.o)
Fatal Error by charmc in directory /root/NAMD_2.7b1_Source/charm-6.1.2/mpi-
linux-x86_64-mpicxx/tmp
   Command mpicxx -o charmxi xi-main.o xi-symbol.o xi-grammar.tab.o xi-scan.o 
xi-util.o sdag-globals.o CSdagConstruct.o CEntry.o -L../bin/../lib returned 
error code 1
charmc exiting...
gmake[1]: *** [../bin/charmxi] Error 1
gmake[1]: Leaving directory `/root/NAMD_2.7b1_Source/charm-6.1.2/mpi-linux-
x86_64-mpicxx/tmp'
gmake: *** [headers] Error 2
--------------------------------------------------------------------------------

Kind regards
Bjoern

-- 
Bjoern Olausson
Martin-Luther-Universität Halle-Wittenberg 
Fachbereich Biochemie/Biotechnologie
Kurt-Mothes-Str. 3
06120 Halle/Saale

Phone: +49-345-55-24942
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